| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998155
Identifier: 121998155
GI number: 121998155
Start: 1480602
End: 1481054
Strand: Reverse
Name: 121998155
Synonym: Hhal_1373
Alternate gene names: NA
Gene position: 1481054-1480602 (Counterclockwise)
Preceding gene: 121998158
Following gene: 121998144
Centisome position: 55.3
GC content: 69.09
Gene sequence:
>453_bases ATGGCCGAAACCCGGCAGGGCCCGCCCGGCGGGAAGAAGCAGCGGCCGAAGAATCTGCCGCGCTGGGCCAGTTGGCTACT GGCGGTGGGGGTGCTCTTCGGAGCGGCGGGCCTGATCTGGCAGAGCCTGCCCGGCGGGGGCTTCAGTACCGATCTGAGCC GCATCGGGCAAGGGGAGCCGGTCGGGGTACTGACCCACGAGACCGCCAATCCGACGAGCATGGGGATCATGGATCAGCTG GACGGACTCGGTGAGGTGGAGCGCGCCGGGGTGTCGTTCATTGTCGCCGATCTGGGCACGCCGGAAGGGCAGGCGTTCGC CGATCAGTACGGGGTGAGCACCGCCGGCGTGCTGATGTTCTTCGATGCCCAGGGCGAGTTCCAGGATGCCCTGGCGCCCC CGCGGGATGCGGCGGAGATTCGTGATATGGCAGCGGAGGTCGGCGGCGGCTGA
Upstream 100 bases:
>100_bases ACGGCCGTCCAATACAGAACCTTGCATGTCCGCGTGCCCGGCGGCAGCCTTGAACGTTGGTGCAGACCGATCATCCATCG CAGAGCAGGGGAGGAGAGAC
Downstream 100 bases:
>100_bases CCGCCGGCGCAGGGTGCGGGGTTGTTGACCCCGCACCCTGCCGATGGAGGGCGTCAGCCCTCGCCTTCGGGGAGCTGTCG CAGGTTCGACTGGATGGCCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 150; Mature: 149
Protein sequence:
>150_residues MAETRQGPPGGKKQRPKNLPRWASWLLAVGVLFGAAGLIWQSLPGGGFSTDLSRIGQGEPVGVLTHETANPTSMGIMDQL DGLGEVERAGVSFIVADLGTPEGQAFADQYGVSTAGVLMFFDAQGEFQDALAPPRDAAEIRDMAAEVGGG
Sequences:
>Translated_150_residues MAETRQGPPGGKKQRPKNLPRWASWLLAVGVLFGAAGLIWQSLPGGGFSTDLSRIGQGEPVGVLTHETANPTSMGIMDQL DGLGEVERAGVSFIVADLGTPEGQAFADQYGVSTAGVLMFFDAQGEFQDALAPPRDAAEIRDMAAEVGGG >Mature_149_residues AETRQGPPGGKKQRPKNLPRWASWLLAVGVLFGAAGLIWQSLPGGGFSTDLSRIGQGEPVGVLTHETANPTSMGIMDQLD GLGEVERAGVSFIVADLGTPEGQAFADQYGVSTAGVLMFFDAQGEFQDALAPPRDAAEIRDMAAEVGGG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15586; Mature: 15455
Theoretical pI: Translated: 4.22; Mature: 4.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAETRQGPPGGKKQRPKNLPRWASWLLAVGVLFGAAGLIWQSLPGGGFSTDLSRIGQGEP CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCC VGVLTHETANPTSMGIMDQLDGLGEVERAGVSFIVADLGTPEGQAFADQYGVSTAGVLMF CEEEEECCCCCCHHHHHHHHCCCCHHHHHCCEEEEECCCCCCCCHHHHHHCCCCCCEEEE FDAQGEFQDALAPPRDAAEIRDMAAEVGGG ECCCCCHHHHCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure AETRQGPPGGKKQRPKNLPRWASWLLAVGVLFGAAGLIWQSLPGGGFSTDLSRIGQGEP CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCC VGVLTHETANPTSMGIMDQLDGLGEVERAGVSFIVADLGTPEGQAFADQYGVSTAGVLMF CEEEEECCCCCCHHHHHHHHCCCCHHHHHCCEEEEECCCCCCCCHHHHHHCCCCCCEEEE FDAQGEFQDALAPPRDAAEIRDMAAEVGGG ECCCCCHHHHCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA