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The map label for this gene is yceD [H]

Identifier: 121998028

GI number: 121998028

Start: 1343589

End: 1344101

Strand: Reverse

Name: yceD [H]

Synonym: Hhal_1238

Alternate gene names: 121998028

Gene position: 1344101-1343589 (Counterclockwise)

Preceding gene: 121998030

Following gene: 121998027

Centisome position: 50.18

GC content: 68.42

Gene sequence:

>513_bases
ATGCAGGCCCTTATGTTGCCGGATGCGCTGGCTCCAGACGATTTTGGCGCGCCGTCGCGTGCCCACGAAGGCACCCTGGC
GCTGCCGACGATGCCACGCCTGTCGCCATTGCTGGCGACGCAGGAGGGGCAGGTCTGGGCACGCCTGGAAGGGGGCCTGG
ATGAGGCTGGCCGGCGGGTCCTGGAAGGCCGCATCGAGGCGAGCGTGCCGCTGACCTGTCAACGCTGTCTCGGGGTCTAC
CACCACCAGGTGGCCGGGGCCTTCCGGGTAGTCATTGTGGCGACCGAGGAGGAAGGCGAGGCATTGCCGGACGAGCTCGA
ACCCTACGTCAGTGGCGCGGCGGTCCGGCCCCTTCAGGTCATTGAGGAAGAGATCCTGCTGGCTCTGCCGGTGGTGGCCA
GACACTCGGGAAACGACTGCGGGGCCCCCGAACACGGCGCCGGGGTGGAGCGAGAGGCGCTTAGCCCGTTCGCGAGCCTG
CAGGGCAGAGTTCGGCGTCAAGCGGACGATTAG

Upstream 100 bases:

>100_bases
ATCTGACATGGCGAGAACCCGTTGGTTTGCAAAGCCGTGCACCCTAGCGCCGTAAACAGCGCAATGCCAGCACTTTACAC
TACCCGGTGGCAGGGCTAGT

Downstream 100 bases:

>100_bases
TCCGAAGCGCGCCGGCCGAGAATTTTAGAACCGATCGGAGTAAGAACAGCATGGCCGTACAACAGAACCGCAAGACGCCC
TCCAAGCGTGGCATGCGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: G30K [H]

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MQALMLPDALAPDDFGAPSRAHEGTLALPTMPRLSPLLATQEGQVWARLEGGLDEAGRRVLEGRIEASVPLTCQRCLGVY
HHQVAGAFRVVIVATEEEGEALPDELEPYVSGAAVRPLQVIEEEILLALPVVARHSGNDCGAPEHGAGVEREALSPFASL
QGRVRRQADD

Sequences:

>Translated_170_residues
MQALMLPDALAPDDFGAPSRAHEGTLALPTMPRLSPLLATQEGQVWARLEGGLDEAGRRVLEGRIEASVPLTCQRCLGVY
HHQVAGAFRVVIVATEEEGEALPDELEPYVSGAAVRPLQVIEEEILLALPVVARHSGNDCGAPEHGAGVEREALSPFASL
QGRVRRQADD
>Mature_170_residues
MQALMLPDALAPDDFGAPSRAHEGTLALPTMPRLSPLLATQEGQVWARLEGGLDEAGRRVLEGRIEASVPLTCQRCLGVY
HHQVAGAFRVVIVATEEEGEALPDELEPYVSGAAVRPLQVIEEEILLALPVVARHSGNDCGAPEHGAGVEREALSPFASL
QGRVRRQADD

Specific function: Unknown

COG id: COG1399

COG function: function code R; Predicted metal-binding, possibly nucleic acid-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0159 [H]

Homologues:

Organism=Escherichia coli, GI1787329, Length=173, Percent_Identity=28.3236994219653, Blast_Score=67, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003772 [H]

Pfam domain/function: PF02620 DUF177 [H]

EC number: NA

Molecular weight: Translated: 18173; Mature: 18173

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQALMLPDALAPDDFGAPSRAHEGTLALPTMPRLSPLLATQEGQVWARLEGGLDEAGRRV
CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCCCCEEEEECCCCCHHHHHH
LEGRIEASVPLTCQRCLGVYHHQVAGAFRVVIVATEEEGEALPDELEPYVSGAAVRPLQV
HHHHCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCHHHHHHHCCCCCCHHHH
IEEEILLALPVVARHSGNDCGAPEHGAGVEREALSPFASLQGRVRRQADD
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQALMLPDALAPDDFGAPSRAHEGTLALPTMPRLSPLLATQEGQVWARLEGGLDEAGRRV
CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCCCCEEEEECCCCCHHHHHH
LEGRIEASVPLTCQRCLGVYHHQVAGAFRVVIVATEEEGEALPDELEPYVSGAAVRPLQV
HHHHCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCHHHHHHHCCCCCCHHHH
IEEEILLALPVVARHSGNDCGAPEHGAGVEREALSPFASLQGRVRRQADD
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]