| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121997961
Identifier: 121997961
GI number: 121997961
Start: 1278368
End: 1279237
Strand: Reverse
Name: 121997961
Synonym: Hhal_1171
Alternate gene names: NA
Gene position: 1279237-1278368 (Counterclockwise)
Preceding gene: 121997962
Following gene: 121997958
Centisome position: 47.76
GC content: 66.9
Gene sequence:
>870_bases ATGAACGAGGAAGAGGTCAACACGCCCGCGGAAGAGACTTGGACGAGCCGGCTGGGGCGCTGGGTCAACATCGCCCTGGC CATCGGTGCCCTGGTCTCCCTGATCGGGACGTTCATCGTCTGGGGCGAGGGCGCGTTCGGCTTCCTGCTGGCGTTTGTCG TCCTCTTCCCGGCCGCCCTGGTCTCGGCGTTGATGCGGTGGTGGCCGCGGCATTCGGCCCAGGGGGTGCGGGATGGCCTC GGGTGGCGGCGCCGCCTCTACATCACCGCGGCCGGTATCGCCTTCGCATCGCTCACCTGCCTGCTGATCGGTGTGGGCTG GTTCGGCACCGCGCCCGGGACCATGCTGCTGGTGGCCGGCACCATGCTGCTACCGCCGGCGGTCATCCTGGGGCTGCTGG CGTTCTCCTTGCGCGACCGCGAGCGCCTGGCGGAGTCTGCGCTCGGTCCCGACGAACCGATCGTCTACCAGGCCGAGGTG CACTGGGGCGTATTCATCCCCAGCATTCTGGTCATCACCGCGACGCTGGTGCTGTTCATAGCGCCACTGGGTACGGTGGG GCACGTCCTGGCTACCATCCTCTACCTCATCGTGCTGCCAGCCACAGCGGCCCACGCGCTGACTGTCTTCCTCAACACCG AACTGGAGCTGACCCCGAACAAGCTGGTTGCTAGCACCGGGCTGATCGTGCGTACGTCGCGGGTCTTCGATCGGGAGCAC ATCCAGGCAGTGGGGGTCAACTACGGTTGGCTGGGCCGCATACTCGGCTACGGTCGGGTGGGCGTCATCTGCAAGGATGG CACCAGCTTCAAGGTGCCCGGCGTCGTCGATCCCGACGGTCTGCGCCACATCGTCACTCGCGGGCTGTAA
Upstream 100 bases:
>100_bases TTCGTCGCCCTGGCGTTCATGCTGGTCGGCTCCGGCCGGATCGGTATGGACCACCTGGTGCGGGAGCGTTTCGCGCGGCT GATACCCTGAGGGAGGAGTC
Downstream 100 bases:
>100_bases CCACCCCTGGGGACTAGCCGGGGGCGGTGGTTCCCGGCGCTGCGGCGCCGGGGGCGGCCGTCAGGTAGGGGTCGATCAGT CCTTGTAGATCGACACGCGC
Product: membrane-flanked domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 289; Mature: 289
Protein sequence:
>289_residues MNEEEVNTPAEETWTSRLGRWVNIALAIGALVSLIGTFIVWGEGAFGFLLAFVVLFPAALVSALMRWWPRHSAQGVRDGL GWRRRLYITAAGIAFASLTCLLIGVGWFGTAPGTMLLVAGTMLLPPAVILGLLAFSLRDRERLAESALGPDEPIVYQAEV HWGVFIPSILVITATLVLFIAPLGTVGHVLATILYLIVLPATAAHALTVFLNTELELTPNKLVASTGLIVRTSRVFDREH IQAVGVNYGWLGRILGYGRVGVICKDGTSFKVPGVVDPDGLRHIVTRGL
Sequences:
>Translated_289_residues MNEEEVNTPAEETWTSRLGRWVNIALAIGALVSLIGTFIVWGEGAFGFLLAFVVLFPAALVSALMRWWPRHSAQGVRDGL GWRRRLYITAAGIAFASLTCLLIGVGWFGTAPGTMLLVAGTMLLPPAVILGLLAFSLRDRERLAESALGPDEPIVYQAEV HWGVFIPSILVITATLVLFIAPLGTVGHVLATILYLIVLPATAAHALTVFLNTELELTPNKLVASTGLIVRTSRVFDREH IQAVGVNYGWLGRILGYGRVGVICKDGTSFKVPGVVDPDGLRHIVTRGL >Mature_289_residues MNEEEVNTPAEETWTSRLGRWVNIALAIGALVSLIGTFIVWGEGAFGFLLAFVVLFPAALVSALMRWWPRHSAQGVRDGL GWRRRLYITAAGIAFASLTCLLIGVGWFGTAPGTMLLVAGTMLLPPAVILGLLAFSLRDRERLAESALGPDEPIVYQAEV HWGVFIPSILVITATLVLFIAPLGTVGHVLATILYLIVLPATAAHALTVFLNTELELTPNKLVASTGLIVRTSRVFDREH IQAVGVNYGWLGRILGYGRVGVICKDGTSFKVPGVVDPDGLRHIVTRGL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31157; Mature: 31157
Theoretical pI: Translated: 8.25; Mature: 8.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNEEEVNTPAEETWTSRLGRWVNIALAIGALVSLIGTFIVWGEGAFGFLLAFVVLFPAAL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH VSALMRWWPRHSAQGVRDGLGWRRRLYITAAGIAFASLTCLLIGVGWFGTAPGTMLLVAG HHHHHHHCCCCCCCHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH TMLLPPAVILGLLAFSLRDRERLAESALGPDEPIVYQAEVHWGVFIPSILVITATLVLFI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHH APLGTVGHVLATILYLIVLPATAAHALTVFLNTELELTPNKLVASTGLIVRTSRVFDREH HHHHHHHHHHHHHHHHHHHHCHHHHHEEEEEECCEEECCCHHHHHCCCEEEHHHHHHHHH IQAVGVNYGWLGRILGYGRVGVICKDGTSFKVPGVVDPDGLRHIVTRGL HHHCCCCHHHHHHHHCCCCEEEEEECCCCEECCCCCCCHHHHHHHHCCC >Mature Secondary Structure MNEEEVNTPAEETWTSRLGRWVNIALAIGALVSLIGTFIVWGEGAFGFLLAFVVLFPAAL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH VSALMRWWPRHSAQGVRDGLGWRRRLYITAAGIAFASLTCLLIGVGWFGTAPGTMLLVAG HHHHHHHCCCCCCCHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH TMLLPPAVILGLLAFSLRDRERLAESALGPDEPIVYQAEVHWGVFIPSILVITATLVLFI HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHH APLGTVGHVLATILYLIVLPATAAHALTVFLNTELELTPNKLVASTGLIVRTSRVFDREH HHHHHHHHHHHHHHHHHHHHCHHHHHEEEEEECCEEECCCHHHHHCCCEEEHHHHHHHHH IQAVGVNYGWLGRILGYGRVGVICKDGTSFKVPGVVDPDGLRHIVTRGL HHHCCCCHHHHHHHHCCCCEEEEEECCCCEECCCCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA