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The map label for this gene is yhbU [H]

Identifier: 121997825

GI number: 121997825

Start: 1113567

End: 1114562

Strand: Reverse

Name: yhbU [H]

Synonym: Hhal_1034

Alternate gene names: 121997825

Gene position: 1114562-1113567 (Counterclockwise)

Preceding gene: 121997826

Following gene: 121997824

Centisome position: 41.61

GC content: 69.58

Gene sequence:

>996_bases
ATGGAACTGCTCTGCCCGGCCGGTAACCTGACCGCCCTGCGCGCCGCCGTGGACAACGGGGCCGATACGGTCTACATCGG
CTTCCGGGACGCCACCAATGCCCGCCACTTCCCCGGCCTCAACTTCACCCCGGAGCAGGCCGCGCGCGGGGTCGAATACG
CCCACCAGCGGGGCGTACGGGTCCTTGTGGCCGTCAACTCCTACGTCCAGGCTGGCGGCTGGTCGCAGTGGCAGCGTTCC
ATCGACGAGGCGGCGCGTATCGGCGCCGACGCCGTCATTGTTGCCGACCTGGGCCTACTGGAATATACCGCCGAGCAGTG
GCCGGATCTCGGCCTGCACCTCTCCGTCCAGGCCTCCGCCACCACCCCCGAGGCCCTCGACTTCTACAAACGGTGCTACG
GGGTCAGCCGTGCCGTACTGCCCCGCGTGCTCTCCATCCAGCAGGTCGAGGCGCTGGCGGGCGACACCGACGTCGAACTT
GAAGTCTTCGGCTTCGGCTCCCTGTGTGTCATGGCCGAAGGGCGCTGCCTGCTCTCCTCCTACGCCACCGGCGAGTCGCC
CAACACCGTGGGTGCCTGCTCGCCGGCCTGGGCCGTGCAGTGGCAGGAGACCCCCGAGGGCCGCGAGGCGCGGCTGGGCG
GGTTGTTGATCGATCGCTTTGCGCCGGACGAGCCGGCGGGCTACCCGACCATCTGCAAAGGGCGTTACGAGGTCGAGGGG
GCCTTGGAGCACGCCTTCGAGTCGCCCACCAGCCTCGAGACCGCCGAGTTGCTGCCCCGGCTCAAGCGGGCCGGTATCCA
CGCGGTGAAGATCGAAGGGCGGCAGCGCAGCCCGGCCTACGTCGGCAAGGTGACGCGCATCTGGCGGCAGCTGATCGACC
GTATCCCGGAGGCCGAGGGCGACTACACCCCGGATCCGGCGCAGGTGGCGGCCCTGCGAGAGTTCTCCGAGGGGGCGACC
ACCACCCTCGGTCCCTACGAGCGCAATTGGCAGTGA

Upstream 100 bases:

>100_bases
TGCTGAGGGCAGGCAGCCTGGTAGCCGCGGTCAGCAGGCTTCGCTCAGGCCGGCGATCGGTTAGAATGCATCGGTTAGTC
GGTGAGCGACGGAGGAACCC

Downstream 100 bases:

>100_bases
CCGGCGAGAGGGCAAGCCGATGAAGATCGCGATCGGGCCGATTCTCTACCACTGGCCGGCCGCCGAGATCCGGCAGTTCT
ACGACGGGCTGCGCGGCCAG

Product: peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MELLCPAGNLTALRAAVDNGADTVYIGFRDATNARHFPGLNFTPEQAARGVEYAHQRGVRVLVAVNSYVQAGGWSQWQRS
IDEAARIGADAVIVADLGLLEYTAEQWPDLGLHLSVQASATTPEALDFYKRCYGVSRAVLPRVLSIQQVEALAGDTDVEL
EVFGFGSLCVMAEGRCLLSSYATGESPNTVGACSPAWAVQWQETPEGREARLGGLLIDRFAPDEPAGYPTICKGRYEVEG
ALEHAFESPTSLETAELLPRLKRAGIHAVKIEGRQRSPAYVGKVTRIWRQLIDRIPEAEGDYTPDPAQVAALREFSEGAT
TTLGPYERNWQ

Sequences:

>Translated_331_residues
MELLCPAGNLTALRAAVDNGADTVYIGFRDATNARHFPGLNFTPEQAARGVEYAHQRGVRVLVAVNSYVQAGGWSQWQRS
IDEAARIGADAVIVADLGLLEYTAEQWPDLGLHLSVQASATTPEALDFYKRCYGVSRAVLPRVLSIQQVEALAGDTDVEL
EVFGFGSLCVMAEGRCLLSSYATGESPNTVGACSPAWAVQWQETPEGREARLGGLLIDRFAPDEPAGYPTICKGRYEVEG
ALEHAFESPTSLETAELLPRLKRAGIHAVKIEGRQRSPAYVGKVTRIWRQLIDRIPEAEGDYTPDPAQVAALREFSEGAT
TTLGPYERNWQ
>Mature_331_residues
MELLCPAGNLTALRAAVDNGADTVYIGFRDATNARHFPGLNFTPEQAARGVEYAHQRGVRVLVAVNSYVQAGGWSQWQRS
IDEAARIGADAVIVADLGLLEYTAEQWPDLGLHLSVQASATTPEALDFYKRCYGVSRAVLPRVLSIQQVEALAGDTDVEL
EVFGFGSLCVMAEGRCLLSSYATGESPNTVGACSPAWAVQWQETPEGREARLGGLLIDRFAPDEPAGYPTICKGRYEVEG
ALEHAFESPTSLETAELLPRLKRAGIHAVKIEGRQRSPAYVGKVTRIWRQLIDRIPEAEGDYTPDPAQVAALREFSEGAT
TTLGPYERNWQ

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1789548, Length=331, Percent_Identity=58.9123867069486, Blast_Score=411, Evalue=1e-116,
Organism=Escherichia coli, GI1788397, Length=313, Percent_Identity=31.3099041533546, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI87081910, Length=301, Percent_Identity=31.2292358803987, Blast_Score=122, Evalue=5e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 36051; Mature: 36051

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLCPAGNLTALRAAVDNGADTVYIGFRDATNARHFPGLNFTPEQAARGVEYAHQRGVR
CCEECCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE
VLVAVNSYVQAGGWSQWQRSIDEAARIGADAVIVADLGLLEYTAEQWPDLGLHLSVQASA
EEEEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCEEEEEEECC
TTPEALDFYKRCYGVSRAVLPRVLSIQQVEALAGDTDVELEVFGFGSLCVMAEGRCLLSS
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEECCCEEEHH
YATGESPNTVGACSPAWAVQWQETPEGREARLGGLLIDRFAPDEPAGYPTICKGRYEVEG
CCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHCCEEEECCCCCCCCCCCCEECCCCHHHH
ALEHAFESPTSLETAELLPRLKRAGIHAVKIEGRQRSPAYVGKVTRIWRQLIDRIPEAEG
HHHHHHCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCC
DYTPDPAQVAALREFSEGATTTLGPYERNWQ
CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MELLCPAGNLTALRAAVDNGADTVYIGFRDATNARHFPGLNFTPEQAARGVEYAHQRGVR
CCEECCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCE
VLVAVNSYVQAGGWSQWQRSIDEAARIGADAVIVADLGLLEYTAEQWPDLGLHLSVQASA
EEEEECHHHHCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCEEEEEEECC
TTPEALDFYKRCYGVSRAVLPRVLSIQQVEALAGDTDVELEVFGFGSLCVMAEGRCLLSS
CCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEECCCEEEHH
YATGESPNTVGACSPAWAVQWQETPEGREARLGGLLIDRFAPDEPAGYPTICKGRYEVEG
CCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHCCEEEECCCCCCCCCCCCEECCCCHHHH
ALEHAFESPTSLETAELLPRLKRAGIHAVKIEGRQRSPAYVGKVTRIWRQLIDRIPEAEG
HHHHHHCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCC
DYTPDPAQVAALREFSEGATTTLGPYERNWQ
CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]