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The map label for this gene is rpoZ

Identifier: 121997761

GI number: 121997761

Start: 1042893

End: 1043264

Strand: Reverse

Name: rpoZ

Synonym: Hhal_0970

Alternate gene names: 121997761

Gene position: 1043264-1042893 (Counterclockwise)

Preceding gene: 121997762

Following gene: 121997760

Centisome position: 38.95

GC content: 69.35

Gene sequence:

>372_bases
ATGGCTCGCGTCACCGTAGAAGATTGCCTGGACAACGTAGACAACCGCTTCGAGCTCGTGCTCGCCGGCGCCAAGCGCGC
GCGTCAGCTGGCCAAGGGCATCGAGCCGCTGGTCGATTGGGAGAACGACAAGCCGACCGTGGTGGCGCTGCGCGAGATCG
CCGCTGGCCACGTCACCTCGGAGATCCTGACCAGCACCGAAGAGAGCGCGGCGGATAGCCTGAGTCTGGGCGGCTTCAGC
ACCGCCGACGTCGAGGCCGAAGTGGGTGGCGGCCCGGTGCAGCCGGATCCCGGCGCCAGCCAGGAGCGCGCCTTCGACGA
GGCGGCCGACGGCACCGCCCAGGGGTCTGGCGATCCCGATCCGACAACCTGA

Upstream 100 bases:

>100_bases
CCCGCCGGATCCGGGTTCCGGGGGCAGTGCACCTTCCTCGCACGGCGGCAACGCGCTAAAATAACATGTCAAACTGCTGA
ATTGTGTCTGGAGGAGCGCG

Downstream 100 bases:

>100_bases
GAGACCGGTCCGGGAAATGTATGGCGCGCGCCGCGAGTGTCATCAACGCCGGTGAATCGGCGTCGGCTTCCGACCCGGAG
CGGCGCGTTCAGGAGGTTTG

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 123; Mature: 122

Protein sequence:

>123_residues
MARVTVEDCLDNVDNRFELVLAGAKRARQLAKGIEPLVDWENDKPTVVALREIAAGHVTSEILTSTEESAADSLSLGGFS
TADVEAEVGGGPVQPDPGASQERAFDEAADGTAQGSGDPDPTT

Sequences:

>Translated_123_residues
MARVTVEDCLDNVDNRFELVLAGAKRARQLAKGIEPLVDWENDKPTVVALREIAAGHVTSEILTSTEESAADSLSLGGFS
TADVEAEVGGGPVQPDPGASQERAFDEAADGTAQGSGDPDPTT
>Mature_122_residues
ARVTVEDCLDNVDNRFELVLAGAKRARQLAKGIEPLVDWENDKPTVVALREIAAGHVTSEILTSTEESAADSLSLGGFST
ADVEAEVGGGPVQPDPGASQERAFDEAADGTAQGSGDPDPTT

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

Organism=Escherichia coli, GI1790081, Length=64, Percent_Identity=56.25, Blast_Score=71, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_HALHL (A1WVN4)

Other databases:

- EMBL:   CP000544
- RefSeq:   YP_001002548.1
- STRING:   A1WVN4
- GeneID:   4709489
- GenomeReviews:   CP000544_GR
- KEGG:   hha:Hhal_0970
- eggNOG:   COG1758
- HOGENOM:   HBG742204
- PhylomeDB:   A1WVN4
- ProtClustDB:   PRK00392
- BioCyc:   HHAL349124:HHAL_0970-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 12752; Mature: 12621

Theoretical pI: Translated: 3.88; Mature: 3.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCLDNVDNRFELVLAGAKRARQLAKGIEPLVDWENDKPTVVALREIAAGHVTS
CCCCCHHHHHCCCCCCEEHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHH
EILTSTEESAADSLSLGGFSTADVEAEVGGGPVQPDPGASQERAFDEAADGTAQGSGDPD
HHHHHCHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC
PTT
CCC
>Mature Secondary Structure 
ARVTVEDCLDNVDNRFELVLAGAKRARQLAKGIEPLVDWENDKPTVVALREIAAGHVTS
CCCCHHHHHCCCCCCEEHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHH
EILTSTEESAADSLSLGGFSTADVEAEVGGGPVQPDPGASQERAFDEAADGTAQGSGDPD
HHHHHCHHHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC
PTT
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA