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The map label for this gene is tdcF [C]

Identifier: 121997759

GI number: 121997759

Start: 1040275

End: 1040667

Strand: Reverse

Name: tdcF [C]

Synonym: Hhal_0968

Alternate gene names: 121997759

Gene position: 1040667-1040275 (Counterclockwise)

Preceding gene: 121997760

Following gene: 121997758

Centisome position: 38.85

GC content: 69.97

Gene sequence:

>393_bases
ATGTCCCGAGAAATCATCCACACCGACGCCGCCCCGGCCGCCATTGGTCCCTACAGCCAGGCGGTGCGCGCCGGCGACTT
CGTCTACATCTCCGGGCAGATCCCGCTGGACCCGCAGACCGGCGAGCTGGTGGGTGCCGACATGAACAGCCAGGTGGCCC
GGGTCTTCGACAACCTCGGTGCCGTGGCCGAGGCCGCCGGCGGCAGCCTGGCCGACGCCGTGCGCATCGCCATCTACCTC
ACCGACCTGAGCCACTTCGCGCTGGTCAACGAGGTCATGACGCAGTACCTCTCCGAGCCCTACCCCTCGCGGGCAGCCAT
CGGCGTCGCCGCGTTGCCCAAGGGGGCCGCGGTGGAGATGGACGCCGTCCTCTATCTGCCCCGGGAGGGCTGA

Upstream 100 bases:

>100_bases
TGACCGCCGCCACCTGGCGGCCGTGGTGCGCCATCTGCGGGCGATGCCCCCGGTGCAGCGCATCGTGCGCAAGAAAGACG
GCTAAGGAGAGAGATCGCGC

Downstream 100 bases:

>100_bases
AGCCCGGCCGTGGACGGGGCACAGCGGCGGCTGACCAGCCTGCCGGGCGTCGGGCCGCGCCTGGCCGAACGCCTGGCACG
GCTGGGCCTGCACACGGTGG

Product: putative endoribonuclease L-PSP

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 130; Mature: 129

Protein sequence:

>130_residues
MSREIIHTDAAPAAIGPYSQAVRAGDFVYISGQIPLDPQTGELVGADMNSQVARVFDNLGAVAEAAGGSLADAVRIAIYL
TDLSHFALVNEVMTQYLSEPYPSRAAIGVAALPKGAAVEMDAVLYLPREG

Sequences:

>Translated_130_residues
MSREIIHTDAAPAAIGPYSQAVRAGDFVYISGQIPLDPQTGELVGADMNSQVARVFDNLGAVAEAAGGSLADAVRIAIYL
TDLSHFALVNEVMTQYLSEPYPSRAAIGVAALPKGAAVEMDAVLYLPREG
>Mature_129_residues
SREIIHTDAAPAAIGPYSQAVRAGDFVYISGQIPLDPQTGELVGADMNSQVARVFDNLGAVAEAAGGSLADAVRIAIYLT
DLSHFALVNEVMTQYLSEPYPSRAAIGVAALPKGAAVEMDAVLYLPREG

Specific function: Anaerobic degradation of L-threonine to propionate. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=121, Percent_Identity=43.801652892562, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI87082213, Length=124, Percent_Identity=43.5483870967742, Blast_Score=110, Evalue=3e-26,
Organism=Escherichia coli, GI87082396, Length=126, Percent_Identity=42.0634920634921, Blast_Score=101, Evalue=1e-23,
Organism=Escherichia coli, GI1787245, Length=128, Percent_Identity=25.78125, Blast_Score=64, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI25148896, Length=123, Percent_Identity=49.5934959349593, Blast_Score=119, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI71982075, Length=123, Percent_Identity=49.5934959349593, Blast_Score=119, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI71982068, Length=123, Percent_Identity=49.5934959349593, Blast_Score=119, Evalue=4e-28,
Organism=Saccharomyces cerevisiae, GI6322138, Length=118, Percent_Identity=33.8983050847458, Blast_Score=87, Evalue=8e-19,
Organism=Saccharomyces cerevisiae, GI6320899, Length=102, Percent_Identity=35.2941176470588, Blast_Score=79, Evalue=2e-16,
Organism=Drosophila melanogaster, GI19921376, Length=121, Percent_Identity=35.5371900826446, Blast_Score=82, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13591; Mature: 13459

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSREIIHTDAAPAAIGPYSQAVRAGDFVYISGQIPLDPQTGELVGADMNSQVARVFDNLG
CCCCEECCCCCCCCCCCHHHHHCCCCEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHHH
AVAEAAGGSLADAVRIAIYLTDLSHFALVNEVMTQYLSEPYPSRAAIGVAALPKGAAVEM
HHHHHCCCCHHHHHEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEE
DAVLYLPREG
EEEEEEECCC
>Mature Secondary Structure 
SREIIHTDAAPAAIGPYSQAVRAGDFVYISGQIPLDPQTGELVGADMNSQVARVFDNLG
CCCEECCCCCCCCCCCHHHHHCCCCEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHHH
AVAEAAGGSLADAVRIAIYLTDLSHFALVNEVMTQYLSEPYPSRAAIGVAALPKGAAVEM
HHHHHCCCCHHHHHEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEE
DAVLYLPREG
EEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2722750 [H]