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The map label for this gene is ubiC [H]

Identifier: 121997757

GI number: 121997757

Start: 1037582

End: 1038178

Strand: Reverse

Name: ubiC [H]

Synonym: Hhal_0966

Alternate gene names: 121997757

Gene position: 1038178-1037582 (Counterclockwise)

Preceding gene: 121997758

Following gene: 121997756

Centisome position: 38.76

GC content: 75.04

Gene sequence:

>597_bases
ATGACGGGTGATGGATTCGCAGTGGCAAACGGGGTGAGGGAACACGCCGCCTGGCAGCCCCAGGCAGCAGCCTGGCGGCC
CGGGGTGGCCGTGGTCCCGGGCCGGCCCGCGCCGGCGGTGCAGCGGTTGCTCACCGAGCGCGGCTCGTTGACGGCGCGTC
TCGAGCGTCTGGGGCCGGTCCGCGTCCACGTGCTGCGCGAGGCCTGGCAGCGACCGGCCCCGGATGAGGGGGTCGCCCTC
GAGCTCCCGGTGGGGCGACACGCCTGGTTGCGGGAGGTCGTGCTCGACTGCGAGGGTGGTCCGACCATCTACGCCCGCAG
CATCGTGCCGGATCGTCTGCTCGGGCCGCTGGCGCGGCTGCCGCGGCTGGGCGAGCGCCCCCTGGGCCGACTGCTCTTCT
CGGCGGCCGATGTGCAGCGTGGCCCGCTTGCGGTGGCGCGGCTCAGGGGCCGCGAGCCGCTGGTCCGCTGGCTGCGTGGC
CACGGCCTGCCATCGCCGGCCGGGGGCTGGGCGCGGCGCTCGACGCTGTCCGTGGCCGGACGGCGGCTGCTGGTAACCGA
AGTCTTTTTCCCGGAGGGTGTTGAGGGTGAGCGGTGA

Upstream 100 bases:

>100_bases
GGGCCGAACTCCTCGAGCAGGCCCCGGGGACCGCCGAGCAGCTGATCCGTCGGTGGGTCGGCGAGGCCGAGCGCTATGGG
CAGGTGTGACCGGTTCCGCA

Downstream 100 bases:

>100_bases
GGTGCATAGCGGGGAGCCATCCGGCCCGGGTCGGGTTGGCGAGCGCTTGCGGACTTATGCACAGCTGGCGCGGCTCGACC
GGCCCATCGGCAACTTCCTG

Product: chorismate lyase

Products: NA

Alternate protein names: CL; CPL [H]

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MTGDGFAVANGVREHAAWQPQAAAWRPGVAVVPGRPAPAVQRLLTERGSLTARLERLGPVRVHVLREAWQRPAPDEGVAL
ELPVGRHAWLREVVLDCEGGPTIYARSIVPDRLLGPLARLPRLGERPLGRLLFSAADVQRGPLAVARLRGREPLVRWLRG
HGLPSPAGGWARRSTLSVAGRRLLVTEVFFPEGVEGER

Sequences:

>Translated_198_residues
MTGDGFAVANGVREHAAWQPQAAAWRPGVAVVPGRPAPAVQRLLTERGSLTARLERLGPVRVHVLREAWQRPAPDEGVAL
ELPVGRHAWLREVVLDCEGGPTIYARSIVPDRLLGPLARLPRLGERPLGRLLFSAADVQRGPLAVARLRGREPLVRWLRG
HGLPSPAGGWARRSTLSVAGRRLLVTEVFFPEGVEGER
>Mature_197_residues
TGDGFAVANGVREHAAWQPQAAAWRPGVAVVPGRPAPAVQRLLTERGSLTARLERLGPVRVHVLREAWQRPAPDEGVALE
LPVGRHAWLREVVLDCEGGPTIYARSIVPDRLLGPLARLPRLGERPLGRLLFSAADVQRGPLAVARLRGREPLVRWLRGH
GLPSPAGGWARRSTLSVAGRRLLVTEVFFPEGVEGER

Specific function: Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4- hydroxybenzoate (4HB) for the ubiquinone pathway [H]

COG id: COG3161

COG function: function code H; 4-hydroxybenzoate synthetase (chorismate lyase)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiC family [H]

Homologues:

Organism=Escherichia coli, GI87082361, Length=158, Percent_Identity=34.1772151898734, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007440 [H]

Pfam domain/function: PF04345 Chor_lyase [H]

EC number: =4.1.3.40 [H]

Molecular weight: Translated: 21580; Mature: 21449

Theoretical pI: Translated: 12.00; Mature: 12.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGDGFAVANGVREHAAWQPQAAAWRPGVAVVPGRPAPAVQRLLTERGSLTARLERLGPV
CCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCHHHHHHHCCHH
RVHVLREAWQRPAPDEGVALELPVGRHAWLREVVLDCEGGPTIYARSIVPDRLLGPLARL
HHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHC
PRLGERPLGRLLFSAADVQRGPLAVARLRGREPLVRWLRGHGLPSPAGGWARRSTLSVAG
CCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
RRLLVTEVFFPEGVEGER
CEEEEEEEECCCCCCCCC
>Mature Secondary Structure 
TGDGFAVANGVREHAAWQPQAAAWRPGVAVVPGRPAPAVQRLLTERGSLTARLERLGPV
CCCCHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCHHHHHHHCCHH
RVHVLREAWQRPAPDEGVALELPVGRHAWLREVVLDCEGGPTIYARSIVPDRLLGPLARL
HHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHC
PRLGERPLGRLLFSAADVQRGPLAVARLRGREPLVRWLRGHGLPSPAGGWARRSTLSVAG
CCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
RRLLVTEVFFPEGVEGER
CEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA