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The map label for this gene is nusB

Identifier: 121997687

GI number: 121997687

Start: 972824

End: 973291

Strand: Reverse

Name: nusB

Synonym: Hhal_0896

Alternate gene names: 121997687

Gene position: 973291-972824 (Counterclockwise)

Preceding gene: 121997688

Following gene: 121997686

Centisome position: 36.34

GC content: 69.44

Gene sequence:

>468_bases
ATGGCGGCTTCAGGGGAAGGCAAGCGCCGCTCGCGGGCCCGATCCAAGCTCGTCCAGGCGCTCTATCAGTACGCGGTCAC
CGGCGCGTCGGCGGAGGATATCGAGCGGCAGTTCCTCGCTGCCGGCCTCGGTGACATCGACGTGGCCTACTTCCGCGAGC
TGATCTACGGGGTCACGGATCGGGCGGCCGAGCTCGATGAACAGCTCTCGGCGCTGCTCGATCGTCCCCTGGTGCAGCTC
GATCCGGTGGAGCGCTCGATCCTGCGCCTGGGCGCCTTCGAGCTGTCCGAGCGCCTGGAGGTGCCCTACCGCGTCGTCAT
CGACGAATCGGTGGAGTTGGCGCGGCGCTTCGGCGCTGACCAGTCGCACCGCTACATCAACGGCGTGCTCGACCGCTTCG
GTGCCACCGTGGCGCTGCGCGCCGCCGAGCGCGGCGAGCGAAAGTCCAGGCGGGGGGATCGGCAGTGA

Upstream 100 bases:

>100_bases
AGGCCATCGAGCGTGCCGGGACCAAGGCCGGCAACAAGGGCGCCGAGGCGGCGCTCTCGGCCCTGGAGATGGTCGATCTG
ATGCGGCAGCTCGAGGCGTA

Downstream 100 bases:

>100_bases
TCGGCGGAGGCGAAGCGGCGCTCATCCAGCGCTATTTCCACGGTCTGACCGCGCAGCGCGACGGGGTCGAGCTGGGGGTC
GGGGACGACGCGGCACTGCT

Product: NusB antitermination factor

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MAASGEGKRRSRARSKLVQALYQYAVTGASAEDIERQFLAAGLGDIDVAYFRELIYGVTDRAAELDEQLSALLDRPLVQL
DPVERSILRLGAFELSERLEVPYRVVIDESVELARRFGADQSHRYINGVLDRFGATVALRAAERGERKSRRGDRQ

Sequences:

>Translated_155_residues
MAASGEGKRRSRARSKLVQALYQYAVTGASAEDIERQFLAAGLGDIDVAYFRELIYGVTDRAAELDEQLSALLDRPLVQL
DPVERSILRLGAFELSERLEVPYRVVIDESVELARRFGADQSHRYINGVLDRFGATVALRAAERGERKSRRGDRQ
>Mature_154_residues
AASGEGKRRSRARSKLVQALYQYAVTGASAEDIERQFLAAGLGDIDVAYFRELIYGVTDRAAELDEQLSALLDRPLVQLD
PVERSILRLGAFELSERLEVPYRVVIDESVELARRFGADQSHRYINGVLDRFGATVALRAAERGERKSRRGDRQ

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=121, Percent_Identity=45.4545454545455, Blast_Score=113, Evalue=7e-27,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_HALHL (A1WVG0)

Other databases:

- EMBL:   CP000544
- RefSeq:   YP_001002474.1
- ProteinModelPortal:   A1WVG0
- SMR:   A1WVG0
- STRING:   A1WVG0
- GeneID:   4709946
- GenomeReviews:   CP000544_GR
- KEGG:   hha:Hhal_0896
- eggNOG:   COG0781
- HOGENOM:   HBG734409
- OMA:   VERSILR
- PhylomeDB:   A1WVG0
- BioCyc:   HHAL349124:HHAL_0896-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 17384; Mature: 17253

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAASGEGKRRSRARSKLVQALYQYAVTGASAEDIERQFLAAGLGDIDVAYFRELIYGVTD
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
RAAELDEQLSALLDRPLVQLDPVERSILRLGAFELSERLEVPYRVVIDESVELARRFGAD
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHEEECHHHHHHHHHCCC
QSHRYINGVLDRFGATVALRAAERGERKSRRGDRQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AASGEGKRRSRARSKLVQALYQYAVTGASAEDIERQFLAAGLGDIDVAYFRELIYGVTD
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
RAAELDEQLSALLDRPLVQLDPVERSILRLGAFELSERLEVPYRVVIDESVELARRFGAD
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHEEECHHHHHHHHHCCC
QSHRYINGVLDRFGATVALRAAERGERKSRRGDRQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA