Click here to switch to the map view.

The map label for this gene is rbn [C]

Identifier: 121997501

GI number: 121997501

Start: 788121

End: 789476

Strand: Reverse

Name: rbn [C]

Synonym: Hhal_0704

Alternate gene names: 121997501

Gene position: 789476-788121 (Counterclockwise)

Preceding gene: 121997504

Following gene: 121997500

Centisome position: 29.48

GC content: 70.43

Gene sequence:

>1356_bases
ATGCACTATCAACTACGGAGGCGCGGAACCAAGATGACGGAACTGCGCGGCCGCCTGCGTGCCGCCGGCGACAGGCTTCG
GGCGCTGCCCACCCACCCGGGGGTCGGCGAGGCGCGGGGCTTCGGTGAGTATCTGATCCAGCGCATCCAGCAGGACCAGT
GCGCCAAGAGCGCCGGCATGCTCGCCTACGTCACCCTGCTGGCGATCGTCCCGCTGATGACCATCGGCTTCTCGGTACTC
GCCGCCTTCCCGGTCTTCGAGGGCGTCACCGATCGCCTGCGCGAGGCCATGGTCGACTACCTGGTCCCGGCGGCCAGCGA
CGCCATCGACGAGCACCTGGAGAACTTCATGGGCCGCGCCGCTGAGCTCACCGCGGTGGGCATCGCCGGTCTGACGGTCA
CCGCACTGCTGCTGCTCAACACCATCGAGCGGGTGCTCAACGAGATCTGGCGGGTGGAGCGGCCGCGGCCGACCCTGCAG
CGGTTCATGGTGTACTGGACGGTGCTGACCATGGGGCCGCTGCTGCTCGGCGTGAGCGTGGCCTCCACCTCGTACATGGG
CACGGTGAATCTGGGCCCGCTGGAGCCGCCGTCGGACCTGATCGCGCAGCTGCTCAATCTGGCGCCCTTCGTGGTGCAGG
CGATTGTCTTCTCGCTGATCTACAGTCTTGTCCCGCACCGCAGTGTGCCGGTGCTCCACGCCGTCATCGGCGGAGTGGTG
GCCTCGGGGCTGTTCGAGCTGGCCAAGGGTGGTTTTGCCGCGTTCATCGCCCGCGCCCCCACCTACGAGGTCGTCTACGG
GGCCCTGGCGGCGCTGCCGATCTTCCTGGTCTGGCTGTACATCTCCTGGCTGGTGATCCTCATCGGCGCCGAGGTCACCC
AGGCCCTGCGCGGCTACCGCTGGCGCACCGGCGGCGATCTGGCCCGCAACCGCTGGGCACTGGTGCTGGCGGTGCATATC
CTGGGGCACCTCTACCAGGCGCAGCGCCGCGGCGCCGGGGTGACCTTCGCCGAGCTGCTCGAGCAGGAGCCGGACGCCGG
AGAGCCCGCCCTGGCCGAGGCCCTGGAGACCCTGCGCCGGCACCACGTCATCGAGCGCAGCGCGGACGGGGCGTGGCTGC
TGGCGCGGGATACCTCGACCTTCACCCTGGCCGAGCTGCACCGCATGCTCGCCTACCCGCTGCCGCCGGCGGCGGGGCTG
GAGACCGGGGCACCCTGGGACCGTCGGCTGGCCGAGCGGCTGCGCCGGGTGGAGGAGCGTTGGGAGCAGAGCTTCGATCT
GTCGCTGAGCGACCTGCTCGAGCCGACCGCCGAGGAGGCTGGAGCAGGGCGTTCGGCCCGTGCGGAGGTGGCATGA

Upstream 100 bases:

>100_bases
GGCCACCGTAGCACCTCCCTCGATTGCGGTACTCGGCATTCTAACGCCTGCACGGAGAGGCTCCACCGTCAACGTACCCC
GCCCTGAAGGGTGGCTACAC

Downstream 100 bases:

>100_bases
CGACGACGCAAGAGAAGACACGCTGTACGATCAGTGGCCGGGTGCAGGGGGTCTGCTTCCGGGCTGCCACCCAGGAGCAG
GCGGTGCGCCTGGGGGTCAC

Product: putative ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MHYQLRRRGTKMTELRGRLRAAGDRLRALPTHPGVGEARGFGEYLIQRIQQDQCAKSAGMLAYVTLLAIVPLMTIGFSVL
AAFPVFEGVTDRLREAMVDYLVPAASDAIDEHLENFMGRAAELTAVGIAGLTVTALLLLNTIERVLNEIWRVERPRPTLQ
RFMVYWTVLTMGPLLLGVSVASTSYMGTVNLGPLEPPSDLIAQLLNLAPFVVQAIVFSLIYSLVPHRSVPVLHAVIGGVV
ASGLFELAKGGFAAFIARAPTYEVVYGALAALPIFLVWLYISWLVILIGAEVTQALRGYRWRTGGDLARNRWALVLAVHI
LGHLYQAQRRGAGVTFAELLEQEPDAGEPALAEALETLRRHHVIERSADGAWLLARDTSTFTLAELHRMLAYPLPPAAGL
ETGAPWDRRLAERLRRVEERWEQSFDLSLSDLLEPTAEEAGAGRSARAEVA

Sequences:

>Translated_451_residues
MHYQLRRRGTKMTELRGRLRAAGDRLRALPTHPGVGEARGFGEYLIQRIQQDQCAKSAGMLAYVTLLAIVPLMTIGFSVL
AAFPVFEGVTDRLREAMVDYLVPAASDAIDEHLENFMGRAAELTAVGIAGLTVTALLLLNTIERVLNEIWRVERPRPTLQ
RFMVYWTVLTMGPLLLGVSVASTSYMGTVNLGPLEPPSDLIAQLLNLAPFVVQAIVFSLIYSLVPHRSVPVLHAVIGGVV
ASGLFELAKGGFAAFIARAPTYEVVYGALAALPIFLVWLYISWLVILIGAEVTQALRGYRWRTGGDLARNRWALVLAVHI
LGHLYQAQRRGAGVTFAELLEQEPDAGEPALAEALETLRRHHVIERSADGAWLLARDTSTFTLAELHRMLAYPLPPAAGL
ETGAPWDRRLAERLRRVEERWEQSFDLSLSDLLEPTAEEAGAGRSARAEVA
>Mature_451_residues
MHYQLRRRGTKMTELRGRLRAAGDRLRALPTHPGVGEARGFGEYLIQRIQQDQCAKSAGMLAYVTLLAIVPLMTIGFSVL
AAFPVFEGVTDRLREAMVDYLVPAASDAIDEHLENFMGRAAELTAVGIAGLTVTALLLLNTIERVLNEIWRVERPRPTLQ
RFMVYWTVLTMGPLLLGVSVASTSYMGTVNLGPLEPPSDLIAQLLNLAPFVVQAIVFSLIYSLVPHRSVPVLHAVIGGVV
ASGLFELAKGGFAAFIARAPTYEVVYGALAALPIFLVWLYISWLVILIGAEVTQALRGYRWRTGGDLARNRWALVLAVHI
LGHLYQAQRRGAGVTFAELLEQEPDAGEPALAEALETLRRHHVIERSADGAWLLARDTSTFTLAELHRMLAYPLPPAAGL
ETGAPWDRRLAERLRRVEERWEQSFDLSLSDLLEPTAEEAGAGRSARAEVA

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family

Homologues:

Organism=Escherichia coli, GI1790319, Length=259, Percent_Identity=44.4015444015444, Blast_Score=221, Evalue=1e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y704_HALHL (A1WUX4)

Other databases:

- EMBL:   CP000544
- RefSeq:   YP_001002288.1
- STRING:   A1WUX4
- GeneID:   4710821
- GenomeReviews:   CP000544_GR
- KEGG:   hha:Hhal_0704
- HOGENOM:   HBG451793
- OMA:   FLLYWAI
- PhylomeDB:   A1WUX4
- ProtClustDB:   CLSK727150
- BioCyc:   HHAL349124:HHAL_0704-MONOMER
- HAMAP:   MF_00672
- InterPro:   IPR017039
- InterPro:   IPR004664
- TIGRFAMs:   TIGR00765

Pfam domain/function: PF03631 Ribonuclease_BN

EC number: 3.1.-.- [C]

Molecular weight: Translated: 49582; Mature: 49582

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x17e59844)-; HASH(0x19b3f834)-; HASH(0x18fe0a84)-; HASH(0x19bb7f88)-; HASH(0x19a1d51c)-; HASH(0x1734a860)-;

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHCCCCHHHHHCHHHHHHCCCCCCCCCCH
>Mature Secondary Structure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HHHHCCCCHHHHHCHHHHHHCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA