| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
Click here to switch to the map view.
The map label for this gene is 121997436
Identifier: 121997436
GI number: 121997436
Start: 715691
End: 716392
Strand: Reverse
Name: 121997436
Synonym: Hhal_0637
Alternate gene names: NA
Gene position: 716392-715691 (Counterclockwise)
Preceding gene: 121997437
Following gene: 121997434
Centisome position: 26.75
GC content: 64.53
Gene sequence:
>702_bases ATGCGGTACCTGAAGATCTTGGCCCTAACCGTGTTGGTGCCCCTTGGCTGCTCCAAGGGGGTCGAGGGCTTTCCGCAAGT ATCGGTCCTCATTGACGGAGATCCCGTCGAGGTCCGGCTCGCGGCCACCCCCGAGACCCGGGCCAGGGGGTTTCAGCACG CCAGCCCGGGGCAGATCCGGTCGGAGCGGATCCTGTTTACATGGCCGGAGGAGAGCGAGCCCGTCTTCCACATGGACAAT TTGGCGGCTCCGCTGAAGATAGCCTGGATCGCCGACGGTGAGGTTATCGCCCTCGAGCGCATGACGCCCGGGCGCGGTCA GTATCGGCCGCCCGAGCCGGTGGATGCCGCATTGGAGCTGGCGCCTGAGGAAGCAGAGCAGCTCGGTATCGAGTCGGGAT CCATGGTCCGCGTTCGGAGGGTGGGGTGTGTTCCGCAAGATTGCCGCTACCGCTGTCCTGTCGCCCTCTGTGCCAATCTG CTGCCAAGCCTGCAGCAGGGGAGCAAAGGAGTGGGGACGCTCTATATCGACCGGCGTGGGACGAGGTTGGAAGTCGCGAA TAAAGCGCTTTTCAGCCGCTGGGAGGTACATGCCGGTTTGCACCGGCGCTGGCAGCGCCGTGCTGCTCAAGCCTTGGCAG CCGAGTGCGTCTATCTCGGTACGCCAGCGATTGCGGAGAACGGCGATGTCCACGGCGCTTGA
Upstream 100 bases:
>100_bases AAGCCGGATGACGCGGGCCCTCATGGCCCCCATAGGGTTTCTGGAGCCGGCGTGATCGGCAAAGGCGCCGTGACCCATCC GGTTGGTGGAGACCGTGCCG
Downstream 100 bases:
>100_bases GTTGCTCATCCGCAAGCAGGCCCGCGCCCGTGGGCTCTCGCTCTCCGAAGTGGCCCGCCGGGCAGGGATCAGTCGCCAGA GTCTCTACGACCTTTGTCGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 233; Mature: 233
Protein sequence:
>233_residues MRYLKILALTVLVPLGCSKGVEGFPQVSVLIDGDPVEVRLAATPETRARGFQHASPGQIRSERILFTWPEESEPVFHMDN LAAPLKIAWIADGEVIALERMTPGRGQYRPPEPVDAALELAPEEAEQLGIESGSMVRVRRVGCVPQDCRYRCPVALCANL LPSLQQGSKGVGTLYIDRRGTRLEVANKALFSRWEVHAGLHRRWQRRAAQALAAECVYLGTPAIAENGDVHGA
Sequences:
>Translated_233_residues MRYLKILALTVLVPLGCSKGVEGFPQVSVLIDGDPVEVRLAATPETRARGFQHASPGQIRSERILFTWPEESEPVFHMDN LAAPLKIAWIADGEVIALERMTPGRGQYRPPEPVDAALELAPEEAEQLGIESGSMVRVRRVGCVPQDCRYRCPVALCANL LPSLQQGSKGVGTLYIDRRGTRLEVANKALFSRWEVHAGLHRRWQRRAAQALAAECVYLGTPAIAENGDVHGA >Mature_233_residues MRYLKILALTVLVPLGCSKGVEGFPQVSVLIDGDPVEVRLAATPETRARGFQHASPGQIRSERILFTWPEESEPVFHMDN LAAPLKIAWIADGEVIALERMTPGRGQYRPPEPVDAALELAPEEAEQLGIESGSMVRVRRVGCVPQDCRYRCPVALCANL LPSLQQGSKGVGTLYIDRRGTRLEVANKALFSRWEVHAGLHRRWQRRAAQALAAECVYLGTPAIAENGDVHGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25554; Mature: 25554
Theoretical pI: Translated: 7.43; Mature: 7.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRYLKILALTVLVPLGCSKGVEGFPQVSVLIDGDPVEVRLAATPETRARGFQHASPGQIR CHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEEECCCHHHCCCCCCCCCCCC SERILFTWPEESEPVFHMDNLAAPLKIAWIADGEVIALERMTPGRGQYRPPEPVDAALEL CCEEEEECCCCCCCEEEECCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCHHHHHHC APEEAEQLGIESGSMVRVRRVGCVPQDCRYRCPVALCANLLPSLQQGSKGVGTLYIDRRG CCHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCC TRLEVANKALFSRWEVHAGLHRRWQRRAAQALAAECVYLGTPAIAENGDVHGA CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCC >Mature Secondary Structure MRYLKILALTVLVPLGCSKGVEGFPQVSVLIDGDPVEVRLAATPETRARGFQHASPGQIR CHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEEEEEEECCCHHHCCCCCCCCCCCC SERILFTWPEESEPVFHMDNLAAPLKIAWIADGEVIALERMTPGRGQYRPPEPVDAALEL CCEEEEECCCCCCCEEEECCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCHHHHHHC APEEAEQLGIESGSMVRVRRVGCVPQDCRYRCPVALCANLLPSLQQGSKGVGTLYIDRRG CCHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCC TRLEVANKALFSRWEVHAGLHRRWQRRAAQALAAECVYLGTPAIAENGDVHGA CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA