| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121997423
Identifier: 121997423
GI number: 121997423
Start: 699885
End: 701042
Strand: Reverse
Name: 121997423
Synonym: Hhal_0623
Alternate gene names: NA
Gene position: 701042-699885 (Counterclockwise)
Preceding gene: 121997424
Following gene: 121997422
Centisome position: 26.17
GC content: 64.59
Gene sequence:
>1158_bases ATGACCCGACTCCACATCCAGCTGGTGTCTGCCCAGCTTGCCGGCAATCTGATACCCGCGCTCATGGAGCGCCCGGAGCA TGCGGCTCTCATTGTTACGCCGGCCATGGCCGGGCAGGCTCAGTTGCTCCGCAAGCTGGAAGAAGAGGCCGGTATTGCGG TTCAGACCTTCGAGAATGCCCCGGATGCCGACCTGCCCCAGTTGCACGAATTCGCCCTGGGGATCTTGGAAGAGTTGCCG GCGGCGGACGAGGTGGTCCTCAATCTGACGGGCGGCAACAAGCTCATGGCTCTGGGGTTTCTCGAGATGCTGCGGGATAG TGTACACCGCCGGATCTACACCGATACCGCCCATGGCCGGTTGGAGCACTTGCCGGAGGGGAATGAACGGGCCGAGGCGC CGACGCCACAGACCTCGGTGCTTGACGTGCCAATCAGCCTGCGCGCCCAGGGGTTTCGCTACCACCGTGCTGCCTCCGCG GACGAGGACTGGCAGCGTGAGGCTGGCGAGCGCAAGCAGGTGGCCAAGAGGCTAGCGGAGGTCGCCAGGGACCATGGCGA TTTCCTGGGTGCGCTGAATGCGGTCGCTTCCCGGTCTCTGGACAGGGAGGGGCGGCTGGTCGCGCGTGACCAGGCCTTCG ATGACCCACCGTACGGCCGCTGGGCCAATAATCTGGGCTGGCTCCGCGACCAGGGCTTGCTGGACTGGGAGGGTGGTGCC GAGGTGACCTTCCTCGACGAGGAGCGGACTCGCTTTCTCAACGGCGGCTGGCTGGAGGAGTATGTCTACCACCGGCTCCG GGATGAGGGGCTCGACGATGTGGCCATGGGGGTGGAAGGCACCTGGGAAGGTACCGACAAGGCCCGCAACGAACTAGATG TGGTTGCCATCCATGTCAATCGTCTGTTGGTGGTGGAGTGCAAGACCCTGCGCCACGGCAACGAAGCCGCCGATGACCAG CAACTCTACAAGCTGGACAGCATCGGCGATAACCTGCGCGGCTTCTTCGGTACCAGTTGGATGGTCAGCGCCCGGCAGCC GACGGATATTATGCGAGAGCGCGCCCGGCAGCATCGGATCCGACTCATTGGCCCGGATGAGCTGCCCCGGCTGCGGGATA TCGTCCGGGAGTGGAAGGCGCACGTGGAGCCCTGCTGA
Upstream 100 bases:
>100_bases TGGAGGCCGCTGGCGCCCGTCTCGAGGCCTACCGTGTAGAGAGCCTGGGCGAAGTGGAACCGGGCAACTGATGCCCTATC ACTCGAAGGAGACCAATCCC
Downstream 100 bases:
>100_bases TTGCGCTTGGCGCTGAGCAGAGCCCTTAAGTGCTCCATGAGCCGCTGAGCAGTGTCTTCAACCAATTTCTGCCACCCTCC GCGGAGTAGTGGTCGCCAGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 385; Mature: 384
Protein sequence:
>385_residues MTRLHIQLVSAQLAGNLIPALMERPEHAALIVTPAMAGQAQLLRKLEEEAGIAVQTFENAPDADLPQLHEFALGILEELP AADEVVLNLTGGNKLMALGFLEMLRDSVHRRIYTDTAHGRLEHLPEGNERAEAPTPQTSVLDVPISLRAQGFRYHRAASA DEDWQREAGERKQVAKRLAEVARDHGDFLGALNAVASRSLDREGRLVARDQAFDDPPYGRWANNLGWLRDQGLLDWEGGA EVTFLDEERTRFLNGGWLEEYVYHRLRDEGLDDVAMGVEGTWEGTDKARNELDVVAIHVNRLLVVECKTLRHGNEAADDQ QLYKLDSIGDNLRGFFGTSWMVSARQPTDIMRERARQHRIRLIGPDELPRLRDIVREWKAHVEPC
Sequences:
>Translated_385_residues MTRLHIQLVSAQLAGNLIPALMERPEHAALIVTPAMAGQAQLLRKLEEEAGIAVQTFENAPDADLPQLHEFALGILEELP AADEVVLNLTGGNKLMALGFLEMLRDSVHRRIYTDTAHGRLEHLPEGNERAEAPTPQTSVLDVPISLRAQGFRYHRAASA DEDWQREAGERKQVAKRLAEVARDHGDFLGALNAVASRSLDREGRLVARDQAFDDPPYGRWANNLGWLRDQGLLDWEGGA EVTFLDEERTRFLNGGWLEEYVYHRLRDEGLDDVAMGVEGTWEGTDKARNELDVVAIHVNRLLVVECKTLRHGNEAADDQ QLYKLDSIGDNLRGFFGTSWMVSARQPTDIMRERARQHRIRLIGPDELPRLRDIVREWKAHVEPC >Mature_384_residues TRLHIQLVSAQLAGNLIPALMERPEHAALIVTPAMAGQAQLLRKLEEEAGIAVQTFENAPDADLPQLHEFALGILEELPA ADEVVLNLTGGNKLMALGFLEMLRDSVHRRIYTDTAHGRLEHLPEGNERAEAPTPQTSVLDVPISLRAQGFRYHRAASAD EDWQREAGERKQVAKRLAEVARDHGDFLGALNAVASRSLDREGRLVARDQAFDDPPYGRWANNLGWLRDQGLLDWEGGAE VTFLDEERTRFLNGGWLEEYVYHRLRDEGLDDVAMGVEGTWEGTDKARNELDVVAIHVNRLLVVECKTLRHGNEAADDQQ LYKLDSIGDNLRGFFGTSWMVSARQPTDIMRERARQHRIRLIGPDELPRLRDIVREWKAHVEPC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43397; Mature: 43266
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRLHIQLVSAQLAGNLIPALMERPEHAALIVTPAMAGQAQLLRKLEEEAGIAVQTFENA CCEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEECCC PDADLPQLHEFALGILEELPAADEVVLNLTGGNKLMALGFLEMLRDSVHRRIYTDTAHGR CCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH LEHLPEGNERAEAPTPQTSVLDVPISLRAQGFRYHRAASADEDWQREAGERKQVAKRLAE HHCCCCCCCCCCCCCCCCEEEECCHHHCCCCEEHHHCCCCCHHHHHHHHHHHHHHHHHHH VARDHGDFLGALNAVASRSLDREGRLVARDQAFDDPPYGRWANNLGWLRDQGLLDWEGGA HHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCHHCCCCEECCCCC EVTFLDEERTRFLNGGWLEEYVYHRLRDEGLDDVAMGVEGTWEGTDKARNELDVVAIHVN EEEEECHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHCCCEEEEEEEEC RLLVVECKTLRHGNEAADDQQLYKLDSIGDNLRGFFGTSWMVSARQPTDIMRERARQHRI EEEEEEEHHHCCCCCCCCHHHHHHHHHCCCHHHHHHCCCEEEECCCCHHHHHHHHHHCCE RLIGPDELPRLRDIVREWKAHVEPC EEECCCCCHHHHHHHHHHHHHCCCC >Mature Secondary Structure TRLHIQLVSAQLAGNLIPALMERPEHAALIVTPAMAGQAQLLRKLEEEAGIAVQTFENA CEEEEEHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEECCC PDADLPQLHEFALGILEELPAADEVVLNLTGGNKLMALGFLEMLRDSVHRRIYTDTAHGR CCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCH LEHLPEGNERAEAPTPQTSVLDVPISLRAQGFRYHRAASADEDWQREAGERKQVAKRLAE HHCCCCCCCCCCCCCCCCEEEECCHHHCCCCEEHHHCCCCCHHHHHHHHHHHHHHHHHHH VARDHGDFLGALNAVASRSLDREGRLVARDQAFDDPPYGRWANNLGWLRDQGLLDWEGGA HHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCHHCCCCEECCCCC EVTFLDEERTRFLNGGWLEEYVYHRLRDEGLDDVAMGVEGTWEGTDKARNELDVVAIHVN EEEEECHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHCCCEEEEEEEEC RLLVVECKTLRHGNEAADDQQLYKLDSIGDNLRGFFGTSWMVSARQPTDIMRERARQHRI EEEEEEEHHHCCCCCCCCHHHHHHHHHCCCHHHHHHCCCEEEECCCCHHHHHHHHHHCCE RLIGPDELPRLRDIVREWKAHVEPC EEECCCCCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA