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The map label for this gene is yjfH [C]

Identifier: 121639499

GI number: 121639499

Start: 4000317

End: 4001285

Strand: Reverse

Name: yjfH [C]

Synonym: BCG_3644c

Alternate gene names: 121639499

Gene position: 4001285-4000317 (Counterclockwise)

Preceding gene: 121639500

Following gene: 121639495

Centisome position: 91.47

GC content: 68.83

Gene sequence:

>969_bases
ATGCCCGGTAACTCTCGGCGGCGGGGTGCGGTCCGCAAATCCGGTACCAAGAAAGGCGCAGGCGTCGGCTCGGGCGGTCA
GCGACGCCGTGGGCTGGAAGGGCGCGGGCCTACCCCGCCGGCGCACCTGCGTCCCCACCATCCCGCCGCCAAGCGGGCAC
GTGCACAGCCACGCCGCCCGGTCAAGCGCGCGGACGAGACCGAGACGGTGTTGGGTCGCAACCCAGTGCTGGAATGCCTG
CGCGCGGGTGTTCCGGCCACCGCGCTATACGTCGCCCTTGGTACCGAGGCCGACGAGCGACTGACTGAATGCGTTGCGCG
GGCGGCTGATTCAGGGATTGCGATCGTCGAGCTGCTACGTGCCGACCTGGATCGGATGACCGCCAACCACCTCCATCAAG
GCATCGCGCTACAGGTGCCACCGTACAACTACGCCCATCCCGATGACCTGCTGGCCGCCGCCCTCGACCAACCGCCTGCG
CTGCTGGTCGCTTTGGACAACCTTTCCGACCCGCGCAACCTCGGTGCGATCGTGCGGTCGGTGGCCGCGTTCGGTGGCCA
TGGGGTGCTGATTCCGCAACGCCGTTCTGCGTCGGTGACCGCGGTGGCGTGGCGCACCAGCGCCGGGGCGGCGGCCAGGA
TTCCGGTGGCCCGGGCCACCAATCTCACCAGGACGCTGAAGGGCTGGGCCGATCGTGGAGTGCGGGTGATCGGACTGGAC
GCCGGTGGCGGCACCGCGCTCGACGATGTAGATGGCACTGACTCGTTGGTGGTGGTCGTTGGGTCGGAAGGCAAGGGGTT
GTCCCGGTTGGTAAGGCAGAACTGTGACGAGGTGGTGTCCATCCCGATGGCCGCTCAGGCCGAATCACTGAACGCCTCGG
TGGCCGCTGGGGTGGTGCTCGCCGCGATCGCCCGCCAGCGCCGGCGGCCACGCGAGCCTCGCGAGCAGACGCAGAATCGC
ATGATTTGA

Upstream 100 bases:

>100_bases
CGCCGACGAGATCCGGGGTCGGCTGAAGAGAGCCGGCATCGAGGTCACCGACACCGCCGACGGGCCACAGTGGTCGCTGC
TGGGTGGTGACACCAAGTAG

Downstream 100 bases:

>100_bases
GCTCAAATCATGCGATTCTGCGTCTGCTCGCGCCCTTGCGGCTAGATCCCCAGAACCTGGGCGCTGGCCCACAGCGCGAG
CACCGCCATCGCCAGGGCCG

Product: putative tRNA/rRNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 321

Protein sequence:

>322_residues
MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRPVKRADETETVLGRNPVLECL
RAGVPATALYVALGTEADERLTECVARAADSGIAIVELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPA
LLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD
AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAAIARQRRRPREPREQTQNR
MI

Sequences:

>Translated_322_residues
MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRPVKRADETETVLGRNPVLECL
RAGVPATALYVALGTEADERLTECVARAADSGIAIVELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPA
LLVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD
AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAAIARQRRRPREPREQTQNR
MI
>Mature_321_residues
PGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRPVKRADETETVLGRNPVLECLR
AGVPATALYVALGTEADERLTECVARAADSGIAIVELLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPAL
LVALDNLSDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLDA
GGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVLAAIARQRRRPREPREQTQNRM
I

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=263, Percent_Identity=29.277566539924, Blast_Score=92, Evalue=7e-19,
Organism=Escherichia coli, GI1790623, Length=244, Percent_Identity=37.7049180327869, Blast_Score=147, Evalue=8e-37,
Organism=Escherichia coli, GI1788935, Length=247, Percent_Identity=27.1255060728745, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17555908, Length=293, Percent_Identity=30.0341296928328, Blast_Score=96, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 33952; Mature: 33821

Theoretical pI: Translated: 11.47; Mature: 11.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP
CCCCCCCCCCHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC
VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR
HHHCCCHHHHHCCCHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHH
ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS
HHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHH
VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD
HHHHCCCEEEEECCCCCCEEEEEEECCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEE
AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL
CCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHCHHHHHHCCCHHHHHHCCHHHHHHHHH
AAIARQRRRPREPREQTQNRMI
HHHHHHHCCCCCHHHHHHCCCC
>Mature Secondary Structure 
PGNSRRRGAVRKSGTKKGAGVGSGGQRRRGLEGRGPTPPAHLRPHHPAAKRARAQPRRP
CCCCCCCCCHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCC
VKRADETETVLGRNPVLECLRAGVPATALYVALGTEADERLTECVARAADSGIAIVELLR
HHHCCCHHHHHCCCHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHHCCCCHHHHHHHH
ADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPALLVALDNLSDPRNLGAIVRS
HHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHH
VAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIGLD
HHHHCCCEEEEECCCCCCEEEEEEECCCCCCEECCHHHHHHHHHHHHHHHHCCCEEEEEE
AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIPMAAQAESLNASVAAGVVL
CCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHCHHHHHHCCCHHHHHHCCHHHHHHHHH
AAIARQRRRPREPREQTQNRMI
HHHHHHHCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]