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The map label for this gene is lppC [C]

Identifier: 121637817

GI number: 121637817

Start: 2158412

End: 2159017

Strand: Reverse

Name: lppC [C]

Synonym: BCG_1950c

Alternate gene names: 121637817

Gene position: 2159017-2158412 (Counterclockwise)

Preceding gene: 121637818

Following gene: 121637816

Centisome position: 49.35

GC content: 68.48

Gene sequence:

>606_bases
ATGACGAGCACACTTCACCGAACCCCATTAGCCACCGCGGGGCTGGCGCTCGTAGTGGCGCTGGGTGGCTGCGGGGGCGG
GGGCGGTGACAGTCGAGAGACACCGCCATACGTGCCGAAAGCGACGACCGTCGACGCAACAACGCCGGCGCCGGCCGCCG
AGCCACTGACGATCGCCAGTCCCATGTTCGCCGACGGCGCCCCGATCCCGGTGCAATTCAGCTGCAAGGGGGCCAACGTG
GCGCCACCGTTGACGTGGTCGTCGCCCGCGGGCGCAGCCGAACTGGCACTCGTCGTCGATGACCCCGACGCGGTCGGCGG
ACTGTACGTGCACTGGATCGTGACCGGAATCGCCCCTGGCTCTGGCAGCACGGCGGATGGTCAGACTCCTGCTGGTGGGC
ACAGCGTGCCGAATTCTGGTGGTCGGCAAGGATACTTCGGTCCATGCCCGCCGGCGGGCACCGGGACACACCACTACCGG
TTTACCCTCTACCACCTTCCTGTCGCGCTCCAGCTGCCACCGGGAGCCACGGGAGTCCAAGCGGCACAGGCGATAGCACA
GGCCGCCAGCGGACAGGCCCGGCTCGTCGGCACATTCGAAGGCTGA

Upstream 100 bases:

>100_bases
AGGCGATGGGTGGCCCGGGGCCCGGCTGTCTGGTAAGCGCGGCCGCAAAACAGCTGTACTCTCGAATCCCAGTTAGTAAC
AATGTGCTATGGAATCTCCA

Downstream 100 bases:

>100_bases
CGCCGCGGCATCCCTGGCGAGGTGGTCGAAACCCTGGCTTCTCCAATTGCGCCTGGCGACAATGATCAATATGGAATCGA
CAGTGGCGCACGCATTTCAC

Product: putative lipoprotein lppC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MTSTLHRTPLATAGLALVVALGGCGGGGGDSRETPPYVPKATTVDATTPAPAAEPLTIASPMFADGAPIPVQFSCKGANV
APPLTWSSPAGAAELALVVDDPDAVGGLYVHWIVTGIAPGSGSTADGQTPAGGHSVPNSGGRQGYFGPCPPAGTGTHHYR
FTLYHLPVALQLPPGATGVQAAQAIAQAASGQARLVGTFEG

Sequences:

>Translated_201_residues
MTSTLHRTPLATAGLALVVALGGCGGGGGDSRETPPYVPKATTVDATTPAPAAEPLTIASPMFADGAPIPVQFSCKGANV
APPLTWSSPAGAAELALVVDDPDAVGGLYVHWIVTGIAPGSGSTADGQTPAGGHSVPNSGGRQGYFGPCPPAGTGTHHYR
FTLYHLPVALQLPPGATGVQAAQAIAQAASGQARLVGTFEG
>Mature_200_residues
TSTLHRTPLATAGLALVVALGGCGGGGGDSRETPPYVPKATTVDATTPAPAAEPLTIASPMFADGAPIPVQFSCKGANVA
PPLTWSSPAGAAELALVVDDPDAVGGLYVHWIVTGIAPGSGSTADGQTPAGGHSVPNSGGRQGYFGPCPPAGTGTHHYRF
TLYHLPVALQLPPGATGVQAAQAIAQAASGQARLVGTFEG

Specific function: Unknown

COG id: COG1881

COG function: function code R; Phospholipid-binding protein

Gene ontology:

Cell location: Periplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0098 family

Homologues:

Organism=Escherichia coli, GI1786757, Length=103, Percent_Identity=38.8349514563107, Blast_Score=64, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1911_MYCTU (P67224)

Other databases:

- EMBL:   BX842578
- EMBL:   AE000516
- PIR:   D70519
- RefSeq:   NP_216427.1
- RefSeq:   NP_336420.1
- ProteinModelPortal:   P67224
- SMR:   P67224
- EnsemblBacteria:   EBMYCT00000001804
- EnsemblBacteria:   EBMYCT00000069156
- GeneID:   885646
- GeneID:   923593
- GenomeReviews:   AE000516_GR
- GenomeReviews:   AL123456_GR
- KEGG:   mtc:MT1962
- KEGG:   mtu:Rv1911c
- TIGR:   MT1962
- TubercuList:   Rv1911c
- GeneTree:   EBGT00050000017552
- HOGENOM:   HBG649023
- OMA:   GHYSKNA
- ProtClustDB:   CLSK791478
- InterPro:   IPR008914
- InterPro:   IPR005247
- Gene3D:   G3DSA:3.90.280.10
- TIGRFAMs:   TIGR00481

Pfam domain/function: PF01161 PBP; SSF49777 PEBP

EC number: NA

Molecular weight: Translated: 19798; Mature: 19667

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSTLHRTPLATAGLALVVALGGCGGGGGDSRETPPYVPKATTVDATTPAPAAEPLTIAS
CCCCCCCCCCHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECC
PMFADGAPIPVQFSCKGANVAPPLTWSSPAGAAELALVVDDPDAVGGLYVHWIVTGIAPG
CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEECCCC
SGSTADGQTPAGGHSVPNSGGRQGYFGPCPPAGTGTHHYRFTLYHLPVALQLPPGATGVQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEECCCCCCHHH
AAQAIAQAASGQARLVGTFEG
HHHHHHHHCCCCEEEEEEECC
>Mature Secondary Structure 
TSTLHRTPLATAGLALVVALGGCGGGGGDSRETPPYVPKATTVDATTPAPAAEPLTIAS
CCCCCCCCCHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECC
PMFADGAPIPVQFSCKGANVAPPLTWSSPAGAAELALVVDDPDAVGGLYVHWIVTGIAPG
CCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEECCCC
SGSTADGQTPAGGHSVPNSGGRQGYFGPCPPAGTGTHHYRFTLYHLPVALQLPPGATGVQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEECCCCCCHHH
AAQAIAQAASGQARLVGTFEG
HHHHHHHHCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036