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The map label for this gene is cycA [H]

Identifier: 121637611

GI number: 121637611

Start: 1935003

End: 1936673

Strand: Reverse

Name: cycA [H]

Synonym: BCG_1742c

Alternate gene names: 121637611

Gene position: 1936673-1935003 (Counterclockwise)

Preceding gene: 121637612

Following gene: 121637610

Centisome position: 44.27

GC content: 63.14

Gene sequence:

>1671_bases
ATGCCGGACGATATCGCGGCTGCCGACCCGACAGACACCCAGCCGCACCTGCGTCGGGACCTTGCCAACCGCCATATTCA
GTTGATCGCGATTGGAGGCGCGATCGGCACCGGCCTATTCATGGGATCTGGGCGAACGATCTCGCTCGCCGGTCCGGCGG
TCATGGTGGTCTACGGGATCATTGGGTTTTTTGTGTTTTTTGTGTTGCGCGCGATGGGCGAGCTGCTGCTGTCGAACCTG
AACTACAAGTCGTTCGTTGACTTCGCCGCCGACCTCCTGGGCCCGGCGGCGGGCTTTTTCGTGGGGTGGTCGTACTGGTT
CGCATGGGTGGTCACCGGGATCGCAGACCTCGTCGCGATCACCAGCTATGCCAGGTTTTGGTGGCCCGGCTTGCCAATCT
GGGTCCCGGCCCTGGTCACGGTCGCCCTGATTCTCGCTGTCAATTTGTTCAGCGTCCGCCACTTCGGGGAGCTGGAGTTT
TGGTTCGCATTGATCAAGGTCGCTGCCATCGTGTGCCTCATCGCCGTCGGCGCGATCCTGGTGGCAACCAACTTCGTCTC
CCCTCATGGTGTGCACGCGACCATCGAGAACCTGTGGAACGACAACGGGTTCTTCCCAACGGGTTTCCTGGGCGTGGTCA
GTGGCTTTCAGATCGCGTTTTTCGCATACATCGGTGTGGAGCTCGTTGGCACCGCCGCGGCTGAGACAGCGGACCCGCGC
CGCACCCTTCCCCGCGCGATCAATGCCGTGCCGTTGCGGGTCGCGGTGTTCTACATCGGTGCCCTGCTGGCGATCCTGGC
CGTCGTGCCGTGGCGGCAGTTCGCCAGTGGCGAGTCCCCGTTTGTGACGATGTTCTCCCTAGCCGGACTTGCCGCTGCGG
CGTCGGTCGTCAACTTCGTCGTGGTCACCGCAGCGGCCTCGTCAGCGAACTCCGGCTTCTTCTCCACCGGGCGAATGCTT
TTCGGCCTCGCCGACGAAGGCCACGCTCCGGCCGCTTTCCACCAACTCAATCGCGGCGGCGTGCCCGCACCCGCCCTGCT
GCTGACGGCTCCGCTACTGCTGACCTCCATCCCGCTGCTCTATGCCGGTCGGTCGGTGATTGGGGCGTTCACACTCGTCA
CGACGGTCTCATCCCTGCTGTTCATGTTTGTGTGGGCAATGATCATCATCAGCTACCTCGTCTACCGTCGCCGACACCCA
CAGCGTCACACCGACTCGGTGTACAAGATGCCCGGTGGCGTGGTGATGTGCTGGGCCGTGCTGGTGTTTTTCGCGTTCGT
GATCTGGACACTTACCACCGAAACCGAAACCGCAACCGCGTTGGCGTGGTTCCCGCTATGGTTCGTGCTGCTCGCCGTGG
GTTGGCTCGTCACCCAGCGCCGGCAGAGCCGCCGCAGCTTTGGTTTTCACTGCCAGGTCGTCGGGGTTCGTCAGCAGCTC
GGCCGCGGTATGGCCAGGCTTGCAATGAAAATCCACGCGCGGCCCAAACTCCGAAGTGCGGTCGTCGTCGAGCCAGTGTC
AGCAGGTGAACCAGGTGCCCGCAGGTCCGCGAAATCTGTGCGTAAGCTAGCGAGCGATGATTCGCAAAGCGCGCATTGCC
CCGTTGCGGTGGTCGGTCTGGCGGATGGCGGCCGGGATCCGCAATATCACCACGACGGGCCAGATCGGTGA

Upstream 100 bases:

>100_bases
GCGGGTCCCCGCTACGGGTTCCGGGTTACGGTGATGTCCCGGCCGCCGTTTGCCGGATAACGCGAGGCCTTCCCTACCCC
AGAACTTGAGGACGCCATAT

Downstream 100 bases:

>100_bases
TGGACGCGAAGCGGCGGCCGTCGACTATGTCCTCGCCCACGCCGGGGCCGGCAACATCGACGACGTGCTGGCCACCATCG
ACAAGTTCGCCTATGAGAAG

Product: putative D-serine/alanine/glycine transporter protein cycA

Products: D-glycine [Cytoplasm]; D-alanine [Cytoplasm]; Proton [Cytoplasm]; D-serine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 556; Mature: 555

Protein sequence:

>556_residues
MPDDIAAADPTDTQPHLRRDLANRHIQLIAIGGAIGTGLFMGSGRTISLAGPAVMVVYGIIGFFVFFVLRAMGELLLSNL
NYKSFVDFAADLLGPAAGFFVGWSYWFAWVVTGIADLVAITSYARFWWPGLPIWVPALVTVALILAVNLFSVRHFGELEF
WFALIKVAAIVCLIAVGAILVATNFVSPHGVHATIENLWNDNGFFPTGFLGVVSGFQIAFFAYIGVELVGTAAAETADPR
RTLPRAINAVPLRVAVFYIGALLAILAVVPWRQFASGESPFVTMFSLAGLAAAASVVNFVVVTAAASSANSGFFSTGRML
FGLADEGHAPAAFHQLNRGGVPAPALLLTAPLLLTSIPLLYAGRSVIGAFTLVTTVSSLLFMFVWAMIIISYLVYRRRHP
QRHTDSVYKMPGGVVMCWAVLVFFAFVIWTLTTETETATALAWFPLWFVLLAVGWLVTQRRQSRRSFGFHCQVVGVRQQL
GRGMARLAMKIHARPKLRSAVVVEPVSAGEPGARRSAKSVRKLASDDSQSAHCPVAVVGLADGGRDPQYHHDGPDR

Sequences:

>Translated_556_residues
MPDDIAAADPTDTQPHLRRDLANRHIQLIAIGGAIGTGLFMGSGRTISLAGPAVMVVYGIIGFFVFFVLRAMGELLLSNL
NYKSFVDFAADLLGPAAGFFVGWSYWFAWVVTGIADLVAITSYARFWWPGLPIWVPALVTVALILAVNLFSVRHFGELEF
WFALIKVAAIVCLIAVGAILVATNFVSPHGVHATIENLWNDNGFFPTGFLGVVSGFQIAFFAYIGVELVGTAAAETADPR
RTLPRAINAVPLRVAVFYIGALLAILAVVPWRQFASGESPFVTMFSLAGLAAAASVVNFVVVTAAASSANSGFFSTGRML
FGLADEGHAPAAFHQLNRGGVPAPALLLTAPLLLTSIPLLYAGRSVIGAFTLVTTVSSLLFMFVWAMIIISYLVYRRRHP
QRHTDSVYKMPGGVVMCWAVLVFFAFVIWTLTTETETATALAWFPLWFVLLAVGWLVTQRRQSRRSFGFHCQVVGVRQQL
GRGMARLAMKIHARPKLRSAVVVEPVSAGEPGARRSAKSVRKLASDDSQSAHCPVAVVGLADGGRDPQYHHDGPDR
>Mature_555_residues
PDDIAAADPTDTQPHLRRDLANRHIQLIAIGGAIGTGLFMGSGRTISLAGPAVMVVYGIIGFFVFFVLRAMGELLLSNLN
YKSFVDFAADLLGPAAGFFVGWSYWFAWVVTGIADLVAITSYARFWWPGLPIWVPALVTVALILAVNLFSVRHFGELEFW
FALIKVAAIVCLIAVGAILVATNFVSPHGVHATIENLWNDNGFFPTGFLGVVSGFQIAFFAYIGVELVGTAAAETADPRR
TLPRAINAVPLRVAVFYIGALLAILAVVPWRQFASGESPFVTMFSLAGLAAAASVVNFVVVTAAASSANSGFFSTGRMLF
GLADEGHAPAAFHQLNRGGVPAPALLLTAPLLLTSIPLLYAGRSVIGAFTLVTTVSSLLFMFVWAMIIISYLVYRRRHPQ
RHTDSVYKMPGGVVMCWAVLVFFAFVIWTLTTETETATALAWFPLWFVLLAVGWLVTQRRQSRRSFGFHCQVVGVRQQLG
RGMARLAMKIHARPKLRSAVVVEPVSAGEPGARRSAKSVRKLASDDSQSAHCPVAVVGLADGGRDPQYHHDGPDR

Specific function: Permease that is involved in the transport across the cytoplasmic membrane of D-alanine, D-serine and glycine [H]

COG id: COG1113

COG function: function code E; Gamma-aminobutyrate permease and related permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily. Amino acid transporter (AAT) (TC 2.A.3.1) family [H]

Homologues:

Organism=Homo sapiens, GI110347453, Length=345, Percent_Identity=23.4782608695652, Blast_Score=74, Evalue=5e-13,
Organism=Homo sapiens, GI181337167, Length=328, Percent_Identity=23.1707317073171, Blast_Score=66, Evalue=9e-11,
Organism=Escherichia coli, GI1790653, Length=460, Percent_Identity=59.3478260869565, Blast_Score=568, Evalue=1e-163,
Organism=Escherichia coli, GI1786602, Length=458, Percent_Identity=39.7379912663755, Blast_Score=330, Evalue=1e-91,
Organism=Escherichia coli, GI1786302, Length=452, Percent_Identity=38.716814159292, Blast_Score=315, Evalue=5e-87,
Organism=Escherichia coli, GI1786789, Length=462, Percent_Identity=37.8787878787879, Blast_Score=314, Evalue=1e-86,
Organism=Escherichia coli, GI87081915, Length=449, Percent_Identity=38.5300668151448, Blast_Score=297, Evalue=1e-81,
Organism=Escherichia coli, GI48994972, Length=420, Percent_Identity=40.4761904761905, Blast_Score=294, Evalue=9e-81,
Organism=Escherichia coli, GI87081708, Length=474, Percent_Identity=33.5443037974684, Blast_Score=241, Evalue=1e-64,
Organism=Escherichia coli, GI1788480, Length=411, Percent_Identity=35.5231143552311, Blast_Score=235, Evalue=7e-63,
Organism=Escherichia coli, GI1789017, Length=422, Percent_Identity=32.2274881516588, Blast_Score=220, Evalue=1e-58,
Organism=Escherichia coli, GI2367353, Length=361, Percent_Identity=24.9307479224377, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17532491, Length=423, Percent_Identity=24.3498817966903, Blast_Score=72, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17540018, Length=352, Percent_Identity=25.8522727272727, Blast_Score=69, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6320772, Length=423, Percent_Identity=32.6241134751773, Blast_Score=190, Evalue=6e-49,
Organism=Saccharomyces cerevisiae, GI6324061, Length=421, Percent_Identity=32.7790973871734, Blast_Score=189, Evalue=7e-49,
Organism=Saccharomyces cerevisiae, GI6324990, Length=441, Percent_Identity=28.7981859410431, Blast_Score=177, Evalue=4e-45,
Organism=Saccharomyces cerevisiae, GI6322892, Length=420, Percent_Identity=31.6666666666667, Blast_Score=175, Evalue=1e-44,
Organism=Saccharomyces cerevisiae, GI6324924, Length=416, Percent_Identity=31.0096153846154, Blast_Score=175, Evalue=1e-44,
Organism=Saccharomyces cerevisiae, GI6320717, Length=405, Percent_Identity=27.6543209876543, Blast_Score=165, Evalue=2e-41,
Organism=Saccharomyces cerevisiae, GI6321629, Length=422, Percent_Identity=27.4881516587678, Blast_Score=157, Evalue=5e-39,
Organism=Saccharomyces cerevisiae, GI6319824, Length=411, Percent_Identity=27.4939172749392, Blast_Score=155, Evalue=1e-38,
Organism=Saccharomyces cerevisiae, GI6324553, Length=397, Percent_Identity=29.7229219143577, Blast_Score=153, Evalue=6e-38,
Organism=Saccharomyces cerevisiae, GI6324059, Length=438, Percent_Identity=31.7351598173516, Blast_Score=151, Evalue=3e-37,
Organism=Saccharomyces cerevisiae, GI6319608, Length=444, Percent_Identity=25.9009009009009, Blast_Score=148, Evalue=3e-36,
Organism=Saccharomyces cerevisiae, GI6319543, Length=443, Percent_Identity=25.9593679458239, Blast_Score=146, Evalue=1e-35,
Organism=Saccharomyces cerevisiae, GI6320251, Length=531, Percent_Identity=24.105461393597, Blast_Score=144, Evalue=3e-35,
Organism=Saccharomyces cerevisiae, GI6321053, Length=403, Percent_Identity=28.5359801488834, Blast_Score=141, Evalue=3e-34,
Organism=Saccharomyces cerevisiae, GI6319542, Length=441, Percent_Identity=23.5827664399093, Blast_Score=134, Evalue=3e-32,
Organism=Saccharomyces cerevisiae, GI6322967, Length=427, Percent_Identity=26.2295081967213, Blast_Score=123, Evalue=1e-28,
Organism=Saccharomyces cerevisiae, GI6324981, Length=445, Percent_Identity=26.2921348314607, Blast_Score=118, Evalue=2e-27,
Organism=Saccharomyces cerevisiae, GI6320364, Length=504, Percent_Identity=23.8095238095238, Blast_Score=101, Evalue=3e-22,
Organism=Drosophila melanogaster, GI161077963, Length=415, Percent_Identity=22.8915662650602, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221512776, Length=337, Percent_Identity=19.2878338278932, Blast_Score=67, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24666159, Length=337, Percent_Identity=19.2878338278932, Blast_Score=67, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293
- InterPro:   IPR004840 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 60035; Mature: 59904

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS00218 AMINO_ACID_PERMEASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDDIAAADPTDTQPHLRRDLANRHIQLIAIGGAIGTGLFMGSGRTISLAGPAVMVVYGI
CCCCCCCCCCCCCCHHHHHHHHHCCEEEEEECCHHHHHEEECCCCEEEECCHHHHHHHHH
IGFFVFFVLRAMGELLLSNLNYKSFVDFAADLLGPAAGFFVGWSYWFAWVVTGIADLVAI
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSYARFWWPGLPIWVPALVTVALILAVNLFSVRHFGELEFWFALIKVAAIVCLIAVGAIL
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
VATNFVSPHGVHATIENLWNDNGFFPTGFLGVVSGFQIAFFAYIGVELVGTAAAETADPR
HHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
RTLPRAINAVPLRVAVFYIGALLAILAVVPWRQFASGESPFVTMFSLAGLAAAASVVNFV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
VVTAAASSANSGFFSTGRMLFGLADEGHAPAAFHQLNRGGVPAPALLLTAPLLLTSIPLL
HHHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
YAGRSVIGAFTLVTTVSSLLFMFVWAMIIISYLVYRRRHPQRHTDSVYKMPGGVVMCWAV
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHH
LVFFAFVIWTLTTETETATALAWFPLWFVLLAVGWLVTQRRQSRRSFGFHCQVVGVRQQL
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHH
GRGMARLAMKIHARPKLRSAVVVEPVSAGEPGARRSAKSVRKLASDDSQSAHCPVAVVGL
HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEE
ADGGRDPQYHHDGPDR
CCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PDDIAAADPTDTQPHLRRDLANRHIQLIAIGGAIGTGLFMGSGRTISLAGPAVMVVYGI
CCCCCCCCCCCCCHHHHHHHHHCCEEEEEECCHHHHHEEECCCCEEEECCHHHHHHHHH
IGFFVFFVLRAMGELLLSNLNYKSFVDFAADLLGPAAGFFVGWSYWFAWVVTGIADLVAI
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TSYARFWWPGLPIWVPALVTVALILAVNLFSVRHFGELEFWFALIKVAAIVCLIAVGAIL
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
VATNFVSPHGVHATIENLWNDNGFFPTGFLGVVSGFQIAFFAYIGVELVGTAAAETADPR
HHHHCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
RTLPRAINAVPLRVAVFYIGALLAILAVVPWRQFASGESPFVTMFSLAGLAAAASVVNFV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
VVTAAASSANSGFFSTGRMLFGLADEGHAPAAFHQLNRGGVPAPALLLTAPLLLTSIPLL
HHHHHCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
YAGRSVIGAFTLVTTVSSLLFMFVWAMIIISYLVYRRRHPQRHTDSVYKMPGGVVMCWAV
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHH
LVFFAFVIWTLTTETETATALAWFPLWFVLLAVGWLVTQRRQSRRSFGFHCQVVGVRQQL
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHH
GRGMARLAMKIHARPKLRSAVVVEPVSAGEPGARRSAKSVRKLASDDSQSAHCPVAVVGL
HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEE
ADGGRDPQYHHDGPDR
CCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: D-glycine [Periplasm]; D-alanine [Periplasm]; Proton [Periplasm]; D-serine [Periplasm] [C]

Specific reaction: Proton [Periplasm] + D-glycine [Periplasm] = Proton [Cytoplasm] + D-glycine [Cytoplasm] Proton [Periplasm] + D-alanine [Periplasm] = Proton [Cytoplasm] + D-alanine [Cytoplasm] Proton [Periplasm] + D-serine [Periplasm] = Proton [Cytoplasm] + D-serine [Cyto

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]