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The map label for this gene is yfdZ [H]

Identifier: 121637110

GI number: 121637110

Start: 1340647

End: 1341735

Strand: Direct

Name: yfdZ [H]

Synonym: BCG_1241

Alternate gene names: 121637110

Gene position: 1340647-1341735 (Clockwise)

Preceding gene: 121637109

Following gene: 121637112

Centisome position: 30.65

GC content: 68.6

Gene sequence:

>1089_bases
GTGTCGGCGTCTCTGCCCGTCTTCCCCTGGGACACCTTGGCCGACGCGAAAGCGCTGGCCGGGGCCCATCCGGATGGCAT
CGTCGACCTCTCCGTCGGCACTCCGGTCGACCCGGTCGCACCGCTGATCCAGGAGGCGCTGGCGGCGGCCAGTGCCGCCC
CTGGCTATCCGGCGACCGCCGGCACCGCACGGTTACGTGAGTCTGTGGTGGCAGCGCTGGCTCGCCGCTACGGCATCACC
AGGCTGACCGAGGCGGCCGTGTTGCCGGTTATCGGCACCAAGGAACTCATCGCCTGGTTGCCGACGTTGTTGGGCCTGGG
CGGTGCGGATCTGGTCGTCGTGCCCGAATTGGCATATCCGACTTATGACGTCGGCGCCCGCCTGGCCGGAACGCGGGTGC
TGCGTGCGGATGCGCTGACCCAGCTGGGTCCGCAATCCCCGGCACTGCTCTACCTGAACTCGCCGAGCAACCCGACCGGA
CGGGTGCTGGGTGTCGACCATTTGCGCAAGGTGGTCGAGTGGGCCCGGGGCAGAGGCGTTCTCGTGGTTTCCGACGAGTG
CTACCTGGGATTGGGCTGGGACGCCGAACCGGTTTCGGTGCTACATCCCTCGGTGTGCGACGGCGACCACACCGGGTTGC
TGGCTGTGCACTCACTATCGAAGAGCTCATCGCTCGCCGGCTACCGAGCGGGTTTCGTCGTCGGTGACCTCGAGATCGTT
GCCGAGCTACTAGCGGTGCGCAAACACGCCGGGATGATGGTGCCGGCGCCGGTACAGGCGGCTATGGTGGCCGCGCTGGA
CGACGACGCGCACGAAAGGCAACAGCGGGAGCGCTACGCACAACGGCGTGCCGCGCTGTTGCCGGCGCTGGGCTCCGCGG
GTTTTGCGGTCGACTATTCGGACGCCGGATTGTATCTATGGGCCACTCGCGGCGAGCCGTGCCGCGACAGTGTCGCGTGG
CTGGCGCAGCGGGGCATCCTGGTGGCACCGGGTGATTTCTACGGCCCGGGTGGGGCTCAGCACGTGCGGGTGGCGCTGAC
GGCCACCGACGAGCGGGTTGCGGCGGCGGTCGGACGGCTCACCTGTTAG

Upstream 100 bases:

>100_bases
AGGTTGGCATGACCGAGAACGACCCGCAAGCGGTCAAGGATCTGGCGCCGCAGAGCGAGGACGCCTGAGCCGGCTGGGGG
CAGCACCCGCTCGCGGCGGA

Downstream 100 bases:

>100_bases
CGCGAACAGACGCAACTTGCGGCCGGGTCACCGCCAGGTCGTGCGCAGCTGGGTTGTCACCGAGAGCGGGTTATCGCCGC
GGAACAGATCGAGGATGGCT

Product: N-succinyldiaminopimelate aminotransferase

Products: oxaloacetate; L-glutamate

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 361

Protein sequence:

>362_residues
MSASLPVFPWDTLADAKALAGAHPDGIVDLSVGTPVDPVAPLIQEALAAASAAPGYPATAGTARLRESVVAALARRYGIT
RLTEAAVLPVIGTKELIAWLPTLLGLGGADLVVVPELAYPTYDVGARLAGTRVLRADALTQLGPQSPALLYLNSPSNPTG
RVLGVDHLRKVVEWARGRGVLVVSDECYLGLGWDAEPVSVLHPSVCDGDHTGLLAVHSLSKSSSLAGYRAGFVVGDLEIV
AELLAVRKHAGMMVPAPVQAAMVAALDDDAHERQQRERYAQRRAALLPALGSAGFAVDYSDAGLYLWATRGEPCRDSVAW
LAQRGILVAPGDFYGPGGAQHVRVALTATDERVAAAVGRLTC

Sequences:

>Translated_362_residues
MSASLPVFPWDTLADAKALAGAHPDGIVDLSVGTPVDPVAPLIQEALAAASAAPGYPATAGTARLRESVVAALARRYGIT
RLTEAAVLPVIGTKELIAWLPTLLGLGGADLVVVPELAYPTYDVGARLAGTRVLRADALTQLGPQSPALLYLNSPSNPTG
RVLGVDHLRKVVEWARGRGVLVVSDECYLGLGWDAEPVSVLHPSVCDGDHTGLLAVHSLSKSSSLAGYRAGFVVGDLEIV
AELLAVRKHAGMMVPAPVQAAMVAALDDDAHERQQRERYAQRRAALLPALGSAGFAVDYSDAGLYLWATRGEPCRDSVAW
LAQRGILVAPGDFYGPGGAQHVRVALTATDERVAAAVGRLTC
>Mature_361_residues
SASLPVFPWDTLADAKALAGAHPDGIVDLSVGTPVDPVAPLIQEALAAASAAPGYPATAGTARLRESVVAALARRYGITR
LTEAAVLPVIGTKELIAWLPTLLGLGGADLVVVPELAYPTYDVGARLAGTRVLRADALTQLGPQSPALLYLNSPSNPTGR
VLGVDHLRKVVEWARGRGVLVVSDECYLGLGWDAEPVSVLHPSVCDGDHTGLLAVHSLSKSSSLAGYRAGFVVGDLEIVA
ELLAVRKHAGMMVPAPVQAAMVAALDDDAHERQQRERYAQRRAALLPALGSAGFAVDYSDAGLYLWATRGEPCRDSVAWL
AQRGILVAPGDFYGPGGAQHVRVALTATDERVAAAVGRLTC

Specific function: Unknown

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Escherichia coli, GI1788722, Length=380, Percent_Identity=30.7894736842105, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1786816, Length=389, Percent_Identity=24.6786632390745, Blast_Score=69, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17567369, Length=229, Percent_Identity=21.3973799126638, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: 2.6.1.1

Molecular weight: Translated: 37763; Mature: 37631

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS00105 AA_TRANSFER_CLASS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASLPVFPWDTLADAKALAGAHPDGIVDLSVGTPVDPVAPLIQEALAAASAAPGYPATA
CCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCC
GTARLRESVVAALARRYGITRLTEAAVLPVIGTKELIAWLPTLLGLGGADLVVVPELAYP
HHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCC
TYDVGARLAGTRVLRADALTQLGPQSPALLYLNSPSNPTGRVLGVDHLRKVVEWARGRGV
CHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEECHHHHHHHHHHHCCCCE
LVVSDECYLGLGWDAEPVSVLHPSVCDGDHTGLLAVHSLSKSSSLAGYRAGFVVGDLEIV
EEECCCEEEECCCCCCCHHHCCCCCCCCCCCCEEEEEECCCCCCCCCEECCEEEECHHHH
AELLAVRKHAGMMVPAPVQAAMVAALDDDAHERQQRERYAQRRAALLPALGSAGFAVDYS
HHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC
DAGLYLWATRGEPCRDSVAWLAQRGILVAPGDFYGPGGAQHVRVALTATDERVAAAVGRL
CCCEEEEECCCCCHHHHHHHHHHCCEEECCCCCCCCCCCCEEEEEEEECCHHHHHHHHHC
TC
CC
>Mature Secondary Structure 
SASLPVFPWDTLADAKALAGAHPDGIVDLSVGTPVDPVAPLIQEALAAASAAPGYPATA
CCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCC
GTARLRESVVAALARRYGITRLTEAAVLPVIGTKELIAWLPTLLGLGGADLVVVPELAYP
HHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCC
TYDVGARLAGTRVLRADALTQLGPQSPALLYLNSPSNPTGRVLGVDHLRKVVEWARGRGV
CHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEECHHHHHHHHHHHCCCCE
LVVSDECYLGLGWDAEPVSVLHPSVCDGDHTGLLAVHSLSKSSSLAGYRAGFVVGDLEIV
EEECCCEEEECCCCCCCHHHCCCCCCCCCCCCEEEEEECCCCCCCCCEECCEEEECHHHH
AELLAVRKHAGMMVPAPVQAAMVAALDDDAHERQQRERYAQRRAALLPALGSAGFAVDYS
HHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC
DAGLYLWATRGEPCRDSVAWLAQRGILVAPGDFYGPGGAQHVRVALTATDERVAAAVGRL
CCCEEEEECCCCCHHHHHHHHHHCCEEECCCCCCCCCCCCEEEEEEEECCHHHHHHHHHC
TC
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: L-aspartate; 2-oxoglutarate

Specific reaction: L-aspartate + 2-oxoglutarate = oxaloacetate + L-glutamate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]