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The map label for this gene is ycdM [C]

Identifier: 121636865

GI number: 121636865

Start: 1081070

End: 1081936

Strand: Reverse

Name: ycdM [C]

Synonym: BCG_0994c

Alternate gene names: 121636865

Gene position: 1081936-1081070 (Counterclockwise)

Preceding gene: 121636866

Following gene: 121636862

Centisome position: 24.73

GC content: 62.75

Gene sequence:

>867_bases
GTGCGGTTCAGCTACGCGGAGGCAATGACCGACTTCACGTTCTACATCCCGCTGGCCAAGGCAGCCGAAGCGGCGGGATA
CAGCAGCATGACGATTCCCGACAGCATCGCCTACCCCTTCGAATCCGACTCGAAGTACCCGTACACACCCGACGGCAACC
GCGAATTCATGGACGGCAAGCCTTTCATCGAAACCTTTGTCCTGACAGCAGCATTGGGCGCAGTCACGACGAGGCTGCGG
TTCAACTTCTTCGTCCTCAAGCTGCCCATCCGCCCGCCGGCTCTGGTGGCAAAGCAGGCCGGTTCCCTAGCCGCCCTGAT
CGGCAACCGGGTCGGGCTGGGTGTCGGCACTAGCCCGTGGCCGGAGGATTACGAGCTGATGGGCGTCCCGTTCGCTAAGC
GCGGCAAGCGGATTGACGAATGCATCGAGATCGTGCGTGGCCTTACCACCGGCGATTACTTCGAGTTCCACGGCGAGTTC
TACGACATACCCAAGACCAAGATGACCCCGGCGCCCACCCAGCCGATCCCGATCCTGGTCGGTGGCCACGCCGATGCAGC
ACTGCGACGGGCGGCGCGCGCCGATGGATGGATGCATGGCGGCGGCGATCCGGACGAACTCGACCGGCTGATCGCCAGGG
TCAAGCGGCTTCGCGAGGAAGCGGGGAAAACCAGCCCGTTCGAAATCCACGTGATCTCCCTGGACGGTTTCACCGTGGAC
GGCGTCAAGCGGCTCGAGGACAAAGGGGTGACGGACGTCATCGTCGGTTTCCGTGTCCCGTACACCATGGGCCCCGACAC
CGAGCCGCTGCAGACCAAGATCCGCAATCTGGAGATGTTCGCCGAGAACGTCATCGCGAAAGTTTAA

Upstream 100 bases:

>100_bases
GGAGAACCAACTCTGACCAAGCCGTTGCGCCCCGCTTGCACGTCAAATTAGAACACGTTCTAATCTCGTTGGGGACGGCC
ACTTCGAGGAAGGCAATCAC

Downstream 100 bases:

>100_bases
GCATCACAACGGATCGATCCCCGATCAGCTTCGTGAGAGCCGTTGGACCCGGTGCCATGCTCGGCGGCGCCTTTCACACC
CGCCACATTGGCCGCTGTCT

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MRFSYAEAMTDFTFYIPLAKAAEAAGYSSMTIPDSIAYPFESDSKYPYTPDGNREFMDGKPFIETFVLTAALGAVTTRLR
FNFFVLKLPIRPPALVAKQAGSLAALIGNRVGLGVGTSPWPEDYELMGVPFAKRGKRIDECIEIVRGLTTGDYFEFHGEF
YDIPKTKMTPAPTQPIPILVGGHADAALRRAARADGWMHGGGDPDELDRLIARVKRLREEAGKTSPFEIHVISLDGFTVD
GVKRLEDKGVTDVIVGFRVPYTMGPDTEPLQTKIRNLEMFAENVIAKV

Sequences:

>Translated_288_residues
MRFSYAEAMTDFTFYIPLAKAAEAAGYSSMTIPDSIAYPFESDSKYPYTPDGNREFMDGKPFIETFVLTAALGAVTTRLR
FNFFVLKLPIRPPALVAKQAGSLAALIGNRVGLGVGTSPWPEDYELMGVPFAKRGKRIDECIEIVRGLTTGDYFEFHGEF
YDIPKTKMTPAPTQPIPILVGGHADAALRRAARADGWMHGGGDPDELDRLIARVKRLREEAGKTSPFEIHVISLDGFTVD
GVKRLEDKGVTDVIVGFRVPYTMGPDTEPLQTKIRNLEMFAENVIAKV
>Mature_288_residues
MRFSYAEAMTDFTFYIPLAKAAEAAGYSSMTIPDSIAYPFESDSKYPYTPDGNREFMDGKPFIETFVLTAALGAVTTRLR
FNFFVLKLPIRPPALVAKQAGSLAALIGNRVGLGVGTSPWPEDYELMGVPFAKRGKRIDECIEIVRGLTTGDYFEFHGEF
YDIPKTKMTPAPTQPIPILVGGHADAALRRAARADGWMHGGGDPDELDRLIARVKRLREEAGKTSPFEIHVISLDGFTVD
GVKRLEDKGVTDVIVGFRVPYTMGPDTEPLQTKIRNLEMFAENVIAKV

Specific function: Unknown

COG id: COG2141

COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787247, Length=181, Percent_Identity=29.2817679558011, Blast_Score=81, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y940_MYCTU (P64761)

Other databases:

- EMBL:   BX842575
- EMBL:   AE000516
- PIR:   B70715
- RefSeq:   NP_215455.1
- RefSeq:   NP_335400.1
- ProteinModelPortal:   P64761
- EnsemblBacteria:   EBMYCT00000003425
- EnsemblBacteria:   EBMYCT00000070717
- GeneID:   885412
- GeneID:   926356
- GenomeReviews:   AE000516_GR
- GenomeReviews:   AL123456_GR
- KEGG:   mtc:MT0967
- KEGG:   mtu:Rv0940c
- TIGR:   MT0967
- TubercuList:   Rv0940c
- GeneTree:   EBGT00050000014763
- HOGENOM:   HBG668369
- OMA:   AEAAGYH
- ProtClustDB:   CLSK790845
- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048
- Gene3D:   G3DSA:3.20.20.30
- TIGRFAMs:   TIGR03619

Pfam domain/function: PF00296 Bac_luciferase; SSF51679 Luciferase_like

EC number: NA

Molecular weight: Translated: 31789; Mature: 31789

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFSYAEAMTDFTFYIPLAKAAEAAGYSSMTIPDSIAYPFESDSKYPYTPDGNREFMDGK
CCCCHHHHHHCEEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PFIETFVLTAALGAVTTRLRFNFFVLKLPIRPPALVAKQAGSLAALIGNRVGLGVGTSPW
HHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCHHHHHHHCCCHHHHHCCCCCCCCCCCCC
PEDYELMGVPFAKRGKRIDECIEIVRGLTTGDYFEFHGEFYDIPKTKMTPAPTQPIPILV
CCCCEEECCCHHHHCCCHHHHHHHHHCCCCCCEEEECCCEEECCCCCCCCCCCCCCEEEE
GGHADAALRRAARADGWMHGGGDPDELDRLIARVKRLREEAGKTSPFEIHVISLDGFTVD
CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEHH
GVKRLEDKGVTDVIVGFRVPYTMGPDTEPLQTKIRNLEMFAENVIAKV
HHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRFSYAEAMTDFTFYIPLAKAAEAAGYSSMTIPDSIAYPFESDSKYPYTPDGNREFMDGK
CCCCHHHHHHCEEEEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PFIETFVLTAALGAVTTRLRFNFFVLKLPIRPPALVAKQAGSLAALIGNRVGLGVGTSPW
HHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCHHHHHHHCCCHHHHHCCCCCCCCCCCCC
PEDYELMGVPFAKRGKRIDECIEIVRGLTTGDYFEFHGEFYDIPKTKMTPAPTQPIPILV
CCCCEEECCCHHHHCCCHHHHHHHHHCCCCCCEEEECCCEEECCCCCCCCCCCCCCEEEE
GGHADAALRRAARADGWMHGGGDPDELDRLIARVKRLREEAGKTSPFEIHVISLDGFTVD
CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCEEHH
GVKRLEDKGVTDVIVGFRVPYTMGPDTEPLQTKIRNLEMFAENVIAKV
HHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036