| Definition | Mycobacterium bovis BCG str. Pasteur 1173P2, complete genome. |
|---|---|
| Accession | NC_008769 |
| Length | 4,374,522 |
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The map label for this gene is fimZ [C]
Identifier: 121636813
GI number: 121636813
Start: 1020405
End: 1023053
Strand: Reverse
Name: fimZ [C]
Synonym: BCG_0942c
Alternate gene names: 121636813
Gene position: 1023053-1020405 (Counterclockwise)
Preceding gene: 121636814
Following gene: 121636812
Centisome position: 23.39
GC content: 64.74
Gene sequence:
>2649_bases GTGCGGGCACTGTTGGCGCAGAACCGGCTCGTGACGCTATGCGGAACCGGCGGTGTCGGCAAGACCCGTCTGGCAATCCA GATCGCGAGTGCATCCGAACTTCGCGACGGTTTGTGCTTTGTCGATCTGGCCCCGATCACTGAATCCGGGATCGTCGCAG CCACGGCTGCGCGCGCCGTGGGTCTGCCCGATCAGCCGGGCCGTTCAACCATGGATAGTCTTCGCCGATTCATCGGCAAT CGCCGCATGCTCATGGTGTTGGACAACTGTGAACATCTTCTCGATGCGTGCGCAGCGTTGGTCGTTGAGCTATTGGGGGC CTGTCCGGAGCTGACGATCTTAGCGACTAGCCGGGAGCCGATCGGGATGGCCGGCGAGATCACCTGGCGCGTACCGTCGA TGTCGATAACCGACGAAGCAGTCGAATTGTTTGCTGACCGAGCCAGCCGAGTTCAGCCCGGGTTCACCATCGCCAATCAC AACGCCGCGGCCGTCGGCGAGATCTGCCGGCGGCTAGACGGCATACCGCTGGCGATCGAGTTCGCTGCCGCACGGGTGCG GTCGATGTCACCGCTCGAGATTGCCGACGGTCTGGACGACTGTTTCCGGCTGTTGGCCGGCGGTGTGCGGGGCGCGGTGC AGCGCCAGCAGACACTTCGCGCCTCGATCGATTGGTCGCATGCACTGCTGACCGAGACCGAGCAAATCTTGTTTCGGCGA CTGGCGCCATTTGTCGGCGGGTTCGACCTCGCCGCGGTGCGGGCGGTCGCCGCCGGTAGCGACCTGGATCCGTTTTCGGT GCTTGATCAGCTGACCCTGCTGGTAGACAAGTCGCTGGTGGTGGCCGACGACTGCCAGGGCCGCACGCGGTACCGGCTGC TGGAAACGGTGCGTCGGTACGCGCTGGAAAAACTGGGCGACTCCGGCGAGGCCGATGTGCACGCACGTCACCGTGACTAC TACACGGCGCTGGCCGCCTCACTCAACACTCCTGCGGACAACGATCACCAACGGCTTGTCGCCCGGGCTGAGACCGAGAT CGACAACCTGCGCGCCGCGTTCGCCTGGAGCCGGGAAAATGGCCATATCACCGAAGCGTTACAGCTCGCATCTTCGCTGC AACCAATCTGGTTCGGGCGGGCGCACCTGCGCGAGGGGTTGTCCTGGTTCAACTCGATCCTGGAAGACCAAAGGTTCCAC CGGCTCGCTGTGTCAACAGCAGTACGGGCGCGAGCGCTCGCTGACAAGGCAATGCTCAGTACCTGGCTGGCCACCAGTCC GGTAGGCGCCACCGACATCATCGCTCCCGCACAACAAGCGCTGGCGATGGCACGTGAGGTGGGCGACCCCGCCGCGTTGG TGCGGGCGCTCACCGCCTGCGGCTGTAGCAGTGGCTACAACGCGGAGGCCGCTGCGCCCTATTTCGCCGAAGCGACCGAC CTGGCACGCGCTATTGACGACAAATGGACGCTGTGTCAAATCCTCTACTGGCGGGGGGTGGGGACCTGCATATCAGGTGA CCCGAATGCTTTGCGAGCCGCGGCAGAAGAATGCCGCGACCTGGCCGACACCATCGGCGACCGGTTCGTCTCACGTCACT GCAGCTTGTGGCTTAGTTTGGCGCAGATGTGGGCTGGCAATCTGACCGAAGCCCTCGAGCTATCCAGGGAAATCACTGCC GAGGCCGAGGCATCCAACGATGTGCCGACAAAGGTTCTCGGCCTATATACCCAAGCCCAGGTGCTGGCGTATTGCGGCGC CAGCGCGGCCCACGCCATAGCCGGGGCGTGCATTGCAGCCGCGACGGAGTTAGGCGGTGTGTACCAAGGCATTGGTTATG CGGCGATGACGTACGCCGCGCTGGCCGCCGGTGATGTCACGGCAGCGCTCGAGGCCAGCGACGCGGCGCGGCCGATTCTT AGGGCCCAGCCCGACCAGGTGACCATGCACCAGGTCCTGATGGCGCAGTTAGCCCTGGCAGGAGGTGATGCGATCGCCGC ACGACAGTTCGCCAACGACGCCGTCGATGCGACCAATGGGTGGCACCGAATGGTGGCGTTGACAATACGCGCGCGCGTAG CCACCGCACGGGGCGAACCAGAACTGGCGCGCGATGATGCTCATGCTGCGCTGGCGTGCGGCGCCGAGCTGCACATCTAC CAGGGCATGCCAGATGCCATGGAACTCCTCGCCGGCCTGGCCGGCGAGGTCGGCAGTCACTCCGAAGGTGTCCGCCTTCT CGGTGCCGCAGCCGCCCTTCGGCAACAGACACGTCAGGTCCGCTTCAAGATTTGGGATGCCGGCTACCAGGCCTCGGTGA CGGCGCTTCGTGAGGCGATGGGTGATGAGGATTTCGACCGCGCCTGGGCCGAGGGGGCCGCCTTGTCCACCGACGAGGCG ATCGCATATGCACAACGCGGTCGCGGTGAACGCAAGCGACCGGCCCGCGGGTGGGGCTCGTTGACCCCGACCGAACGCGA CGTCGTGCGGTTGGTCAGCGAGGGGTTATCCAACAAGGACATTGCAAAACGGCTTTTCGTCTCGCCGCGCACTGTGCAAA CCCACCTCACCCACGTCTACGCCAAACTTGGCTTGGCCTCCCGAGTACAACTGGTAGACGAGGCGGCACGCCGCGGCTCA CCCTCGTGA
Upstream 100 bases:
>100_bases GAAAAGTTTCCCCCACTGCGCACGGCCAAATCCAGCCCGACATCGATTCTCCCGGCGCAGTTCACCACATTTGTGGGCCG CCGTGCGCAAATAAGCTGAG
Downstream 100 bases:
>100_bases CGATTCTCGCGGCACGCTCATCGCCGGCACCGTGATTGGCACCAGCCGGTAGCGTCGTTGCCGGGGCCAGGTGTGAGAAT TCTCGTATGACAGTGGTCCC
Product: LuxR family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 882; Mature: 882
Protein sequence:
>882_residues MRALLAQNRLVTLCGTGGVGKTRLAIQIASASELRDGLCFVDLAPITESGIVAATAARAVGLPDQPGRSTMDSLRRFIGN RRMLMVLDNCEHLLDACAALVVELLGACPELTILATSREPIGMAGEITWRVPSMSITDEAVELFADRASRVQPGFTIANH NAAAVGEICRRLDGIPLAIEFAAARVRSMSPLEIADGLDDCFRLLAGGVRGAVQRQQTLRASIDWSHALLTETEQILFRR LAPFVGGFDLAAVRAVAAGSDLDPFSVLDQLTLLVDKSLVVADDCQGRTRYRLLETVRRYALEKLGDSGEADVHARHRDY YTALAASLNTPADNDHQRLVARAETEIDNLRAAFAWSRENGHITEALQLASSLQPIWFGRAHLREGLSWFNSILEDQRFH RLAVSTAVRARALADKAMLSTWLATSPVGATDIIAPAQQALAMAREVGDPAALVRALTACGCSSGYNAEAAAPYFAEATD LARAIDDKWTLCQILYWRGVGTCISGDPNALRAAAEECRDLADTIGDRFVSRHCSLWLSLAQMWAGNLTEALELSREITA EAEASNDVPTKVLGLYTQAQVLAYCGASAAHAIAGACIAAATELGGVYQGIGYAAMTYAALAAGDVTAALEASDAARPIL RAQPDQVTMHQVLMAQLALAGGDAIAARQFANDAVDATNGWHRMVALTIRARVATARGEPELARDDAHAALACGAELHIY QGMPDAMELLAGLAGEVGSHSEGVRLLGAAAALRQQTRQVRFKIWDAGYQASVTALREAMGDEDFDRAWAEGAALSTDEA IAYAQRGRGERKRPARGWGSLTPTERDVVRLVSEGLSNKDIAKRLFVSPRTVQTHLTHVYAKLGLASRVQLVDEAARRGS PS
Sequences:
>Translated_882_residues MRALLAQNRLVTLCGTGGVGKTRLAIQIASASELRDGLCFVDLAPITESGIVAATAARAVGLPDQPGRSTMDSLRRFIGN RRMLMVLDNCEHLLDACAALVVELLGACPELTILATSREPIGMAGEITWRVPSMSITDEAVELFADRASRVQPGFTIANH NAAAVGEICRRLDGIPLAIEFAAARVRSMSPLEIADGLDDCFRLLAGGVRGAVQRQQTLRASIDWSHALLTETEQILFRR LAPFVGGFDLAAVRAVAAGSDLDPFSVLDQLTLLVDKSLVVADDCQGRTRYRLLETVRRYALEKLGDSGEADVHARHRDY YTALAASLNTPADNDHQRLVARAETEIDNLRAAFAWSRENGHITEALQLASSLQPIWFGRAHLREGLSWFNSILEDQRFH RLAVSTAVRARALADKAMLSTWLATSPVGATDIIAPAQQALAMAREVGDPAALVRALTACGCSSGYNAEAAAPYFAEATD LARAIDDKWTLCQILYWRGVGTCISGDPNALRAAAEECRDLADTIGDRFVSRHCSLWLSLAQMWAGNLTEALELSREITA EAEASNDVPTKVLGLYTQAQVLAYCGASAAHAIAGACIAAATELGGVYQGIGYAAMTYAALAAGDVTAALEASDAARPIL RAQPDQVTMHQVLMAQLALAGGDAIAARQFANDAVDATNGWHRMVALTIRARVATARGEPELARDDAHAALACGAELHIY QGMPDAMELLAGLAGEVGSHSEGVRLLGAAAALRQQTRQVRFKIWDAGYQASVTALREAMGDEDFDRAWAEGAALSTDEA IAYAQRGRGERKRPARGWGSLTPTERDVVRLVSEGLSNKDIAKRLFVSPRTVQTHLTHVYAKLGLASRVQLVDEAARRGS PS >Mature_882_residues MRALLAQNRLVTLCGTGGVGKTRLAIQIASASELRDGLCFVDLAPITESGIVAATAARAVGLPDQPGRSTMDSLRRFIGN RRMLMVLDNCEHLLDACAALVVELLGACPELTILATSREPIGMAGEITWRVPSMSITDEAVELFADRASRVQPGFTIANH NAAAVGEICRRLDGIPLAIEFAAARVRSMSPLEIADGLDDCFRLLAGGVRGAVQRQQTLRASIDWSHALLTETEQILFRR LAPFVGGFDLAAVRAVAAGSDLDPFSVLDQLTLLVDKSLVVADDCQGRTRYRLLETVRRYALEKLGDSGEADVHARHRDY YTALAASLNTPADNDHQRLVARAETEIDNLRAAFAWSRENGHITEALQLASSLQPIWFGRAHLREGLSWFNSILEDQRFH RLAVSTAVRARALADKAMLSTWLATSPVGATDIIAPAQQALAMAREVGDPAALVRALTACGCSSGYNAEAAAPYFAEATD LARAIDDKWTLCQILYWRGVGTCISGDPNALRAAAEECRDLADTIGDRFVSRHCSLWLSLAQMWAGNLTEALELSREITA EAEASNDVPTKVLGLYTQAQVLAYCGASAAHAIAGACIAAATELGGVYQGIGYAAMTYAALAAGDVTAALEASDAARPIL RAQPDQVTMHQVLMAQLALAGGDAIAARQFANDAVDATNGWHRMVALTIRARVATARGEPELARDDAHAALACGAELHIY QGMPDAMELLAGLAGEVGSHSEGVRLLGAAAALRQQTRQVRFKIWDAGYQASVTALREAMGDEDFDRAWAEGAALSTDEA IAYAQRGRGERKRPARGWGSLTPTERDVVRLVSEGLSNKDIAKRLFVSPRTVQTHLTHVYAKLGLASRVQLVDEAARRGS PS
Specific function: Unknown
COG id: COG3903
COG function: function code R; Predicted ATPase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000767 - InterPro: IPR016032 - InterPro: IPR011990 - InterPro: IPR000792 - InterPro: IPR011991 [H]
Pfam domain/function: PF00196 GerE [H]
EC number: NA
Molecular weight: Translated: 94471; Mature: 94471
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRALLAQNRLVTLCGTGGVGKTRLAIQIASASELRDGLCFVDLAPITESGIVAATAARAV CCCCHHCCCEEEEECCCCCCCEEEEEEECCHHHHHCCEEEEEECCCCCCCCHHHHHHHHC GLPDQPGRSTMDSLRRFIGNRRMLMVLDNCEHLLDACAALVVELLGACPELTILATSREP CCCCCCCHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC IGMAGEITWRVPSMSITDEAVELFADRASRVQPGFTIANHNAAAVGEICRRLDGIPLAIE CCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHCCCCEEHH FAAARVRSMSPLEIADGLDDCFRLLAGGVRGAVQRQQTLRASIDWSHALLTETEQILFRR HHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH LAPFVGGFDLAAVRAVAAGSDLDPFSVLDQLTLLVDKSLVVADDCQGRTRYRLLETVRRY HHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHH ALEKLGDSGEADVHARHRDYYTALAASLNTPADNDHQRLVARAETEIDNLRAAFAWSREN HHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHEEECCC GHITEALQLASSLQPIWFGRAHLREGLSWFNSILEDQRFHRLAVSTAVRARALADKAMLS CCHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TWLATSPVGATDIIAPAQQALAMAREVGDPAALVRALTACGCSSGYNAEAAAPYFAEATD HHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH LARAIDDKWTLCQILYWRGVGTCISGDPNALRAAAEECRDLADTIGDRFVSRHCSLWLSL HHHHHCCCHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AQMWAGNLTEALELSREITAEAEASNDVPTKVLGLYTQAQVLAYCGASAAHAIAGACIAA HHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH ATELGGVYQGIGYAAMTYAALAAGDVTAALEASDAARPILRAQPDQVTMHQVLMAQLALA HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHCHHHHCCCCHHHHHHHHHHHHHHC GGDAIAARQFANDAVDATNGWHRMVALTIRARVATARGEPELARDDAHAALACGAELHIY CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHCCCEEEEE QGMPDAMELLAGLAGEVGSHSEGVRLLGAAAALRQQTRQVRFKIWDAGYQASVTALREAM CCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHH GDEDFDRAWAEGAALSTDEAIAYAQRGRGERKRPARGWGSLTPTERDVVRLVSEGLSNKD CCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHH IAKRLFVSPRTVQTHLTHVYAKLGLASRVQLVDEAARRGSPS HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MRALLAQNRLVTLCGTGGVGKTRLAIQIASASELRDGLCFVDLAPITESGIVAATAARAV CCCCHHCCCEEEEECCCCCCCEEEEEEECCHHHHHCCEEEEEECCCCCCCCHHHHHHHHC GLPDQPGRSTMDSLRRFIGNRRMLMVLDNCEHLLDACAALVVELLGACPELTILATSREP CCCCCCCHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCC IGMAGEITWRVPSMSITDEAVELFADRASRVQPGFTIANHNAAAVGEICRRLDGIPLAIE CCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHCCCCEEHH FAAARVRSMSPLEIADGLDDCFRLLAGGVRGAVQRQQTLRASIDWSHALLTETEQILFRR HHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH LAPFVGGFDLAAVRAVAAGSDLDPFSVLDQLTLLVDKSLVVADDCQGRTRYRLLETVRRY HHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHH ALEKLGDSGEADVHARHRDYYTALAASLNTPADNDHQRLVARAETEIDNLRAAFAWSREN HHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHEEECCC GHITEALQLASSLQPIWFGRAHLREGLSWFNSILEDQRFHRLAVSTAVRARALADKAMLS CCHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TWLATSPVGATDIIAPAQQALAMAREVGDPAALVRALTACGCSSGYNAEAAAPYFAEATD HHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH LARAIDDKWTLCQILYWRGVGTCISGDPNALRAAAEECRDLADTIGDRFVSRHCSLWLSL HHHHHCCCHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AQMWAGNLTEALELSREITAEAEASNDVPTKVLGLYTQAQVLAYCGASAAHAIAGACIAA HHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH ATELGGVYQGIGYAAMTYAALAAGDVTAALEASDAARPILRAQPDQVTMHQVLMAQLALA HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHCHHHHCCCCHHHHHHHHHHHHHHC GGDAIAARQFANDAVDATNGWHRMVALTIRARVATARGEPELARDDAHAALACGAELHIY CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCHHHHHCCCEEEEE QGMPDAMELLAGLAGEVGSHSEGVRLLGAAAALRQQTRQVRFKIWDAGYQASVTALREAM CCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHH GDEDFDRAWAEGAALSTDEAIAYAQRGRGERKRPARGWGSLTPTERDVVRLVSEGLSNKD CCCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHH IAKRLFVSPRTVQTHLTHVYAKLGLASRVQLVDEAARRGSPS HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]