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The map label for this gene is 121611891

Identifier: 121611891

GI number: 121611891

Start: 5528960

End: 5529238

Strand: Direct

Name: 121611891

Synonym: Veis_4994

Alternate gene names: NA

Gene position: 5528960-5529238 (Clockwise)

Preceding gene: 121611890

Following gene: 121611892

Centisome position: 99.32

GC content: 58.78

Gene sequence:

>279_bases
ATGTACGCGCTAGCTTTCGACCTGGTGGTGGCCGACACTGCCAAGCATCACCCCAAGGGCGTGACACAGGCGTATACCGA
GATTGGCGCGGTGCTTGGCGAGTATGGCTTTCGCCGCGTACAGGGTAGCCTGTACGTCACCGATGACGAGAACATGGCGA
ACCTGTTCCTTGCCATCCAGGCGCTGAGAACCCGGATGTGGTTCCCAAAGTCCGTGCGCGATATCCGCGCTTTCCGTATC
GAGCAGTGGTCTGACTTCACTGCCGTGGTGAAGTCGTAA

Upstream 100 bases:

>100_bases
TGGGCGATGGGGACTGGATGATCGAGATCACGATGATCGAAACGGGCGAGAAAGCGGAATACCGTTGGTCGCATCTGATC
GATGACCCGCAGGCTCACTG

Downstream 100 bases:

>100_bases
TGCCCCAAAACCATATGCGCCAGGCTGAAAAACCCCTCAACCTTCCCTTCGTTTGGCCGTAATGCAGGTACGAAGAGGCC
GCAAGCCCCTTTGCGCTGCC

Product: virulence-associated protein D (VapD) region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 92; Mature: 92

Protein sequence:

>92_residues
MYALAFDLVVADTAKHHPKGVTQAYTEIGAVLGEYGFRRVQGSLYVTDDENMANLFLAIQALRTRMWFPKSVRDIRAFRI
EQWSDFTAVVKS

Sequences:

>Translated_92_residues
MYALAFDLVVADTAKHHPKGVTQAYTEIGAVLGEYGFRRVQGSLYVTDDENMANLFLAIQALRTRMWFPKSVRDIRAFRI
EQWSDFTAVVKS
>Mature_92_residues
MYALAFDLVVADTAKHHPKGVTQAYTEIGAVLGEYGFRRVQGSLYVTDDENMANLFLAIQALRTRMWFPKSVRDIRAFRI
EQWSDFTAVVKS

Specific function: Unknown

COG id: COG3309

COG function: function code S; Uncharacterized virulence-associated protein D

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the vapD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016368
- InterPro:   IPR019199 [H]

Pfam domain/function: PF09827 CRISPR_Cas2 [H]

EC number: NA

Molecular weight: Translated: 10501; Mature: 10501

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYALAFDLVVADTAKHHPKGVTQAYTEIGAVLGEYGFRRVQGSLYVTDDENMANLFLAIQ
CCEEHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHH
ALRTRMWFPKSVRDIRAFRIEQWSDFTAVVKS
HHHHHCCCCHHHHHHHHHHHHCCCCHHHHHCC
>Mature Secondary Structure
MYALAFDLVVADTAKHHPKGVTQAYTEIGAVLGEYGFRRVQGSLYVTDDENMANLFLAIQ
CCEEHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHH
ALRTRMWFPKSVRDIRAFRIEQWSDFTAVVKS
HHHHHCCCCHHHHHHHHHHHHCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2991186 [H]