| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
Click here to switch to the map view.
The map label for this gene is 121611876
Identifier: 121611876
GI number: 121611876
Start: 5509339
End: 5510163
Strand: Direct
Name: 121611876
Synonym: Veis_4979
Alternate gene names: NA
Gene position: 5509339-5510163 (Clockwise)
Preceding gene: 121611875
Following gene: 121611879
Centisome position: 98.97
GC content: 65.94
Gene sequence:
>825_bases ATGGCCCACCCCGTCACGCATCGGATGCGCGCGCTGCGGGCGGTGGCGGGCCGGGAGATAGGCAAGTTCTTCCAGCAGCC TGGCCGGATGCTCTCGTCGCTGGTGCGGCCCCTGCTGTGGTTTTTGGTGTTTGCCGCCGGTTTCCAGAACATCTTCGGGG TGGCCATCATCGCGCCTTACCAGACCTATATCGAATACAAGGTCTACATGGCGCCGGGGCTGCTCGCGATGATCGCGCTG TTCAACGGCATGCAGTCCTCGCTGGCGATGGTGTACGACCGCGAGATGGGTGTGATGCTGCTGCTGCTGACAGCCCCCCT GCCGCGCGGCTGGCTGCTGGCCTGCAAACTGCTCGGCGGCATGTTGCTGTCCTTGCTGCAAATGCTGGCCTTCCTGCTGG TGGCGTTAGGCTTTGGCGTGACGTTCGCATGGCAAGACCTGCCGGGCGCGCTGGCGGTGATGGCGCTGGCGGCGCTGATG CTGGGCGCGCTCGGCCTGCTGCTATCGGTGCATGTGCGGCAGTTGGAGAACTTTGCCGGCACGATGAATTTCGTGATCTT CCCGATGTTCTTCATCAGCTCGGCCCTCTACCCGCTGTGGAAGCTGGAGGAATCGGGCGCCACCATCGTCTACCAACTGG CGCGCGCCAACCCGTTCACGCACGCGGTCGAAGCCATCCGCTTCGCGCTGTACGGCCAGGCGCAATGGAGCAGCCTGGCG GTGGTGGCAGGCTGTGCGGCGCTGTTCTTCACACTCGCACTGCGGGGCTACGACCCGCAGCGCGGCGTGGCCCGGGCAGC GCGCGACCTGCGCGCCGGCCGTTGA
Upstream 100 bases:
>100_bases CGGCGCCGCTGGAGGGCTTCCTGCATCCGAAAAACGACCTCGACACGCTCGGTGCGGATGCCCCGGAAACAGCGTGCCGC AAAGCCCGTTGAAGCAGGCG
Downstream 100 bases:
>100_bases AACGGCGCCGCCACCGCTCATTCAAAGACAAAAGCCTTTCTTTTATCCAGCAGATAAGGGCGGTAATATCCGCAGCCGGG ACTGACCGGCAACAAATCCT
Product: ABC-2 type transporter
Products: NA
Alternate protein names: Efflux ABC Transporter Permease Protein; ABC Transporter Permease Protein; ABC Transporter Permease; ABC-2 Type Transporter Superfamily; Antibiotic Export Permease Protein; ABC Efflux Transporter Permease Protein; ABC-Type Multidrug Transport System; ABC Transporter; Daunorubicin Resistance ABC Transporter Permease Protein; Transporter ABC-2 Integral Membrane Protein Family; ABC Transporter Protein
Number of amino acids: Translated: 274; Mature: 273
Protein sequence:
>274_residues MAHPVTHRMRALRAVAGREIGKFFQQPGRMLSSLVRPLLWFLVFAAGFQNIFGVAIIAPYQTYIEYKVYMAPGLLAMIAL FNGMQSSLAMVYDREMGVMLLLLTAPLPRGWLLACKLLGGMLLSLLQMLAFLLVALGFGVTFAWQDLPGALAVMALAALM LGALGLLLSVHVRQLENFAGTMNFVIFPMFFISSALYPLWKLEESGATIVYQLARANPFTHAVEAIRFALYGQAQWSSLA VVAGCAALFFTLALRGYDPQRGVARAARDLRAGR
Sequences:
>Translated_274_residues MAHPVTHRMRALRAVAGREIGKFFQQPGRMLSSLVRPLLWFLVFAAGFQNIFGVAIIAPYQTYIEYKVYMAPGLLAMIAL FNGMQSSLAMVYDREMGVMLLLLTAPLPRGWLLACKLLGGMLLSLLQMLAFLLVALGFGVTFAWQDLPGALAVMALAALM LGALGLLLSVHVRQLENFAGTMNFVIFPMFFISSALYPLWKLEESGATIVYQLARANPFTHAVEAIRFALYGQAQWSSLA VVAGCAALFFTLALRGYDPQRGVARAARDLRAGR >Mature_273_residues AHPVTHRMRALRAVAGREIGKFFQQPGRMLSSLVRPLLWFLVFAAGFQNIFGVAIIAPYQTYIEYKVYMAPGLLAMIALF NGMQSSLAMVYDREMGVMLLLLTAPLPRGWLLACKLLGGMLLSLLQMLAFLLVALGFGVTFAWQDLPGALAVMALAALML GALGLLLSVHVRQLENFAGTMNFVIFPMFFISSALYPLWKLEESGATIVYQLARANPFTHAVEAIRFALYGQAQWSSLAV VAGCAALFFTLALRGYDPQRGVARAARDLRAGR
Specific function: Unknown
COG id: COG0842
COG function: function code V; ABC-type multidrug transport system, permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30070; Mature: 29938
Theoretical pI: Translated: 10.37; Mature: 10.37
Prosite motif: PS51012 ABC_TM2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 5.5 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 5.1 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHPVTHRMRALRAVAGREIGKFFQQPGRMLSSLVRPLLWFLVFAAGFQNIFGVAIIAPY CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QTYIEYKVYMAPGLLAMIALFNGMQSSLAMVYDREMGVMLLLLTAPLPRGWLLACKLLGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH MLLSLLQMLAFLLVALGFGVTFAWQDLPGALAVMALAALMLGALGLLLSVHVRQLENFAG HHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TMNFVIFPMFFISSALYPLWKLEESGATIVYQLARANPFTHAVEAIRFALYGQAQWSSLA HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHCCCHHHHHHHHHHHHHCCCHHHHHH VVAGCAALFFTLALRGYDPQRGVARAARDLRAGR HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC >Mature Secondary Structure AHPVTHRMRALRAVAGREIGKFFQQPGRMLSSLVRPLLWFLVFAAGFQNIFGVAIIAPY CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QTYIEYKVYMAPGLLAMIALFNGMQSSLAMVYDREMGVMLLLLTAPLPRGWLLACKLLGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH MLLSLLQMLAFLLVALGFGVTFAWQDLPGALAVMALAALMLGALGLLLSVHVRQLENFAG HHHHHHHHHHHHHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TMNFVIFPMFFISSALYPLWKLEESGATIVYQLARANPFTHAVEAIRFALYGQAQWSSLA HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHCCCHHHHHHHHHHHHHCCCHHHHHH VVAGCAALFFTLALRGYDPQRGVARAARDLRAGR HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA