| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121611874
Identifier: 121611874
GI number: 121611874
Start: 5507107
End: 5508117
Strand: Direct
Name: 121611874
Synonym: Veis_4977
Alternate gene names: NA
Gene position: 5507107-5508117 (Clockwise)
Preceding gene: 121611873
Following gene: 121611875
Centisome position: 98.93
GC content: 65.18
Gene sequence:
>1011_bases ATGACCGACATGACCGAAATCACGCCCCCCTCTGCGTTGCCGGCCCGCCTGCGGGCACTGTTGGCCGGGCTCTGCCTGGC CCCCGGGCTGGCCTTGAGCGCCGGCACCGGCCAGATCTTCGTCTCGAACGAGAAGGACGACAGCCTGACCCTGATCCGGG CGGACACGCGCCAGGTGACGGGCACCCAGGCGCAGTGCAAACGGCCGCGCCACCTGCAACTGTCGCCGGATCGGAGCCGC CTGTACGTCGCTTGCAGCGACGACCACCGCATCGACGTGATCGATGTCGCCAGCCGCAAGACGGTCGACACACTGTCGGT CGGCGAGGACCCGGAATTGTTCGACCTCAGCCCCGACGGCAAGTCCCTGTATGTATCGAACGAGGACGATGCGCTGCTGT CGGCCTTCGATGTGGCTTCCGGCAGGAAGCTGTTCGAGGTCGAAGTCGGCGAAGAGCCTGAAGGCGTCAAGGCCAGCGCC GACGGCAAGCATGTCTATGTCACCTCCGAGGTGGCGAACATGGTTCATGTCATCGATGTCGCAACGCGCAAGCTGGTCAA GAACATACAGGTCGGCAACCGGCCCCGCCGCTTCGCCCTGACGCCGGACGGCAAGGAGCTATGGGTCAGCAACGAACTCG GCGCCAGCGTGAGCGTGATCCGCACCGACCATCTGACGGTTGCGCAGACCATAGAGTTCGCGCCCAAGGGCTTGCGCATC GACAACATCACGCCGGTCGGCATCATCATGTCCGCCGACGGCAAGCGCGCCTATGTCGGCTTGGGCCGCGCCAACCATGT GGCCGTGGTGGATACCGCGAGCAAGCGCGCGACAGACTACATCCTGGTCGGCAAGCGGGCCTGGGGCCTGGGGCTGACCC GCGACAACCGCCTGCTGTATGTGGTCAATGGCCTGTCCGACGATGTGAGCGTGGTCGACACCGCAAGCAACAAGGCAATC GCCACCATCCGGGTCGGGCGGGTGCCGCATTCGGTGGTGATCGATGATTGA
Upstream 100 bases:
>100_bases CGCTTCGACGGCGCGCCGGCGCAACTGCTGCGTACCACCGGCGGCGCCAGCCTGGAAGCCGCATTCCTGTCCCTGACCGG GACTGCCAACGATCACTGAA
Downstream 100 bases:
>100_bases AACCGGCAGGCCGGGCATGCGCAAAAACGGGTTCCTGCGCAACGGCCGATGGGCATGGGCATGGCTGCTGGCCTGCCTGT GCTCCTGGGCCGCAGCCGCG
Product: YVTN beta-propeller repeat-containing protein
Products: NA
Alternate protein names: 40-Residue YVTN Family Beta-Propeller Repeat Protein; Surface Antigen Gene; Surface Layer Protein; Cell Surface Protein; YVTN Family Beta-Propeller Repeat Protein; 40-Residue Yvtn Family Beta-Propeller Repeat Protein; Beta-Propeller Repeat-Containing Protein; Yvtn Beta-Propeller Repeat-Containing Protein; Triple Helix Repeat-Containing Collagen; Vegetative Incompatibility; Beta-Propeller Fold Protein; Surface Antigen; Yvtn Beta-Propeller Repeat Family Protein; WD40 Domain-Containing Protein; Outer Membrane Protein; Glycine-Rich Cell Wall Protein; YVTN Beta-Propeller Repeat Family Protein; WD-40 Repeat-Containing Protein; IPT/TIG Domain Protein; Cytochrome D1 Heme Region; Serine/Threonine Protein Kinase; Transmembrane Protein; YVTN Family Beta-Propeller Repeat-Containing Protein; Alpha-1 2-Mannosidase; Signal Peptide; Beta-Propeller Repeat Protein YVTN Family; SGL Domain-Containing Protein; LOW QUALITY PROTEIN Surface Antigen Protein; Surface Antigen-Like Protein; Secreted Protein; Alkaline Serine Protease; YVTN Family Beta-Propeller Repeat Family Protein
Number of amino acids: Translated: 336; Mature: 335
Protein sequence:
>336_residues MTDMTEITPPSALPARLRALLAGLCLAPGLALSAGTGQIFVSNEKDDSLTLIRADTRQVTGTQAQCKRPRHLQLSPDRSR LYVACSDDHRIDVIDVASRKTVDTLSVGEDPELFDLSPDGKSLYVSNEDDALLSAFDVASGRKLFEVEVGEEPEGVKASA DGKHVYVTSEVANMVHVIDVATRKLVKNIQVGNRPRRFALTPDGKELWVSNELGASVSVIRTDHLTVAQTIEFAPKGLRI DNITPVGIIMSADGKRAYVGLGRANHVAVVDTASKRATDYILVGKRAWGLGLTRDNRLLYVVNGLSDDVSVVDTASNKAI ATIRVGRVPHSVVIDD
Sequences:
>Translated_336_residues MTDMTEITPPSALPARLRALLAGLCLAPGLALSAGTGQIFVSNEKDDSLTLIRADTRQVTGTQAQCKRPRHLQLSPDRSR LYVACSDDHRIDVIDVASRKTVDTLSVGEDPELFDLSPDGKSLYVSNEDDALLSAFDVASGRKLFEVEVGEEPEGVKASA DGKHVYVTSEVANMVHVIDVATRKLVKNIQVGNRPRRFALTPDGKELWVSNELGASVSVIRTDHLTVAQTIEFAPKGLRI DNITPVGIIMSADGKRAYVGLGRANHVAVVDTASKRATDYILVGKRAWGLGLTRDNRLLYVVNGLSDDVSVVDTASNKAI ATIRVGRVPHSVVIDD >Mature_335_residues TDMTEITPPSALPARLRALLAGLCLAPGLALSAGTGQIFVSNEKDDSLTLIRADTRQVTGTQAQCKRPRHLQLSPDRSRL YVACSDDHRIDVIDVASRKTVDTLSVGEDPELFDLSPDGKSLYVSNEDDALLSAFDVASGRKLFEVEVGEEPEGVKASAD GKHVYVTSEVANMVHVIDVATRKLVKNIQVGNRPRRFALTPDGKELWVSNELGASVSVIRTDHLTVAQTIEFAPKGLRID NITPVGIIMSADGKRAYVGLGRANHVAVVDTASKRATDYILVGKRAWGLGLTRDNRLLYVVNGLSDDVSVVDTASNKAIA TIRVGRVPHSVVIDD
Specific function: Unknown
COG id: COG3391
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36216; Mature: 36084
Theoretical pI: Translated: 6.41; Mature: 6.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDMTEITPPSALPARLRALLAGLCLAPGLALSAGTGQIFVSNEKDDSLTLIRADTRQVT CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCEEEEECCCCCCEEEEEECCCEEC GTQAQCKRPRHLQLSPDRSRLYVACSDDHRIDVIDVASRKTVDTLSVGEDPELFDLSPDG CCHHHHCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEEEECCCCCCEEEECCCC KSLYVSNEDDALLSAFDVASGRKLFEVEVGEEPEGVKASADGKHVYVTSEVANMVHVIDV CEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCEECCCCCEEEEEHHHHHHHHHHHH ATRKLVKNIQVGNRPRRFALTPDGKELWVSNELGASVSVIRTDHLTVAQTIEFAPKGLRI HHHHHHHHCCCCCCCCEEEECCCCCEEEEECCCCCEEEEEEECCEEEEEHHHCCCCCEEE DNITPVGIIMSADGKRAYVGLGRANHVAVVDTASKRATDYILVGKRAWGLGLTRDNRLLY CCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCEEEEECCEEEECCEECCCEEEE VVNGLSDDVSVVDTASNKAIATIRVGRVPHSVVIDD EEECCCCCCEEEECCCCCEEEEEEECCCCCEEEECC >Mature Secondary Structure TDMTEITPPSALPARLRALLAGLCLAPGLALSAGTGQIFVSNEKDDSLTLIRADTRQVT CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCEEEEECCCCCCEEEEEECCCEEC GTQAQCKRPRHLQLSPDRSRLYVACSDDHRIDVIDVASRKTVDTLSVGEDPELFDLSPDG CCHHHHCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEEEECCCCCCEEEECCCC KSLYVSNEDDALLSAFDVASGRKLFEVEVGEEPEGVKASADGKHVYVTSEVANMVHVIDV CEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCEECCCCCEEEEEHHHHHHHHHHHH ATRKLVKNIQVGNRPRRFALTPDGKELWVSNELGASVSVIRTDHLTVAQTIEFAPKGLRI HHHHHHHHCCCCCCCCEEEECCCCCEEEEECCCCCEEEEEEECCEEEEEHHHCCCCCEEE DNITPVGIIMSADGKRAYVGLGRANHVAVVDTASKRATDYILVGKRAWGLGLTRDNRLLY CCCCCEEEEEECCCCEEEEECCCCCEEEEEECCCCCCCEEEEECCEEEECCEECCCEEEE VVNGLSDDVSVVDTASNKAIATIRVGRVPHSVVIDD EEECCCCCCEEEECCCCCEEEEEEECCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA