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The map label for this gene is lptF [H]

Identifier: 121611822

GI number: 121611822

Start: 5443483

End: 5444601

Strand: Direct

Name: lptF [H]

Synonym: Veis_4923

Alternate gene names: 121611822

Gene position: 5443483-5444601 (Clockwise)

Preceding gene: 121611816

Following gene: 121611823

Centisome position: 97.79

GC content: 64.52

Gene sequence:

>1119_bases
ATGTTATTCGATTCATCGATCCGCAAGGAATTGGCGCGCAGCTTCGGTGCGACGCTGGTGGTGCTGGTGACCGTGGTCAT
GACCATGATGCTCATCCGCACTCTGGGCCAGGCCGCGCGGGGCAGCGTCAGCCCCTCGGACGTGATGCTGGTCATGGGCT
TTACCGTGGTGGGCCAATTGCCCACCATTGCCAGCCTGAGTTTGTTCATTGCCGTGGTGGGCACGTTGTCGCGCATGTAC
CGCGACAGCGAGATGGTGATCTGGTTTGCCAGCGGCCGGGGCCTGGCCAGCCTGGTCAGGCCCTTGCTGCGCTTTGCCTG
GCCGGTGATGCTGGTGATTGCCGTGTTGTCGCTGCTGGTCTGGCCCTGGGCCAACGCGCAGATCCAGCAGCTCAAGACCC
GGTACGAGCAGCGCAGCGACATCGACCGGATCGCGCCAGGCGAATTCCAGGAGTCGTCCAATGGCAACCGGGTGTTCTTC
ATCGACAAGGGCAACCCCGCCCCGCTGGCGGGCAATGACGCCGCGCAGACGGGCAGCAACATCTTCATCGCCGCCAGCGA
TGGCCGGCAGGAATCGGTGACATCGGCCCGCAGCGCGCGTTTGCAACTGCAAGATGGGCAGCGCATGGCCGTGCTCAGCG
ACGGGCAGCGGCTGGAAACTTCGCACGACCGGCCCGGGCTCAAGATCAGCGAGTTCTCGGAATATGTGATGCACATCGGT
TCTGCCCCGCCAGGCGCGGCCGAAGATTTGGCGGTCAAGACCCGCGCGACCCACGAGTTGCTGCTCAAGTCCCTGCCGGC
CTACCGCGCCGAACTGGGCTGGCGCCTGGGGCTGGTTTTGGCCGCGCTCAATTTCGTGCTGCTCGGGCTGGCCGTGACCA
GTGTCAACCCGCGCGCAGCGCGCAGCACCAGCATGTTGTTTGCGCTGTTCGCCTTCATCGTCTACTACAACCTGATGACC
CTGGGCCAGAGCTGGGTTGGCGTGGGTCGGCTCGGTCTGGGCAGTTTCATGCTGCTACTGCATGGCGGCATGCTGATGCT
GGCACTGCTGGTTCTGGCGGTGCGGCATCACCAATGGCGCCTGCCAAACCTGTGGCAAGCAGGCCGGGGCCGTGCATGA

Upstream 100 bases:

>100_bases
ATGCGTCACCCATGAGACGGGCGCGGCCCACGCCCGGCCGCTGGCGCAACCTCCTCGACGGGCGGGCGCCGCAGGCGACT
CGGGGTGTTTCATTCAGCCA

Downstream 100 bases:

>100_bases
AAACCATTCGCCGCCTGATCCATCGCGAGGCCCTGTCGGCCGTTTGCTTCGTCACGGCCGGTTTTCTGGCGTTGTTCTTC
TTTTTCGATCTGATCGATGA

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MLFDSSIRKELARSFGATLVVLVTVVMTMMLIRTLGQAARGSVSPSDVMLVMGFTVVGQLPTIASLSLFIAVVGTLSRMY
RDSEMVIWFASGRGLASLVRPLLRFAWPVMLVIAVLSLLVWPWANAQIQQLKTRYEQRSDIDRIAPGEFQESSNGNRVFF
IDKGNPAPLAGNDAAQTGSNIFIAASDGRQESVTSARSARLQLQDGQRMAVLSDGQRLETSHDRPGLKISEFSEYVMHIG
SAPPGAAEDLAVKTRATHELLLKSLPAYRAELGWRLGLVLAALNFVLLGLAVTSVNPRAARSTSMLFALFAFIVYYNLMT
LGQSWVGVGRLGLGSFMLLLHGGMLMLALLVLAVRHHQWRLPNLWQAGRGRA

Sequences:

>Translated_372_residues
MLFDSSIRKELARSFGATLVVLVTVVMTMMLIRTLGQAARGSVSPSDVMLVMGFTVVGQLPTIASLSLFIAVVGTLSRMY
RDSEMVIWFASGRGLASLVRPLLRFAWPVMLVIAVLSLLVWPWANAQIQQLKTRYEQRSDIDRIAPGEFQESSNGNRVFF
IDKGNPAPLAGNDAAQTGSNIFIAASDGRQESVTSARSARLQLQDGQRMAVLSDGQRLETSHDRPGLKISEFSEYVMHIG
SAPPGAAEDLAVKTRATHELLLKSLPAYRAELGWRLGLVLAALNFVLLGLAVTSVNPRAARSTSMLFALFAFIVYYNLMT
LGQSWVGVGRLGLGSFMLLLHGGMLMLALLVLAVRHHQWRLPNLWQAGRGRA
>Mature_372_residues
MLFDSSIRKELARSFGATLVVLVTVVMTMMLIRTLGQAARGSVSPSDVMLVMGFTVVGQLPTIASLSLFIAVVGTLSRMY
RDSEMVIWFASGRGLASLVRPLLRFAWPVMLVIAVLSLLVWPWANAQIQQLKTRYEQRSDIDRIAPGEFQESSNGNRVFF
IDKGNPAPLAGNDAAQTGSNIFIAASDGRQESVTSARSARLQLQDGQRMAVLSDGQRLETSHDRPGLKISEFSEYVMHIG
SAPPGAAEDLAVKTRATHELLLKSLPAYRAELGWRLGLVLAALNFVLLGLAVTSVNPRAARSTSMLFALFAFIVYYNLMT
LGQSWVGVGRLGLGSFMLLLHGGMLMLALLVLAVRHHQWRLPNLWQAGRGRA

Specific function: Part of the ABC transporter complex lptBFG involved in the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG0795

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptF/lptG family [H]

Homologues:

Organism=Escherichia coli, GI1790712, Length=310, Percent_Identity=28.0645161290323, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005495 [H]

Pfam domain/function: PF03739 YjgP_YjgQ [H]

EC number: NA

Molecular weight: Translated: 40653; Mature: 40653

Theoretical pI: Translated: 11.02; Mature: 11.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFDSSIRKELARSFGATLVVLVTVVMTMMLIRTLGQAARGSVSPSDVMLVMGFTVVGQL
CCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
PTIASLSLFIAVVGTLSRMYRDSEMVIWFASGRGLASLVRPLLRFAWPVMLVIAVLSLLV
CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
WPWANAQIQQLKTRYEQRSDIDRIAPGEFQESSNGNRVFFIDKGNPAPLAGNDAAQTGSN
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCE
IFIAASDGRQESVTSARSARLQLQDGQRMAVLSDGQRLETSHDRPGLKISEFSEYVMHIG
EEEEECCCCHHHHHHHHHHEEEECCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
SAPPGAAEDLAVKTRATHELLLKSLPAYRAELGWRLGLVLAALNFVLLGLAVTSVNPRAA
CCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
RSTSMLFALFAFIVYYNLMTLGQSWVGVGRLGLGSFMLLLHGGMLMLALLVLAVRHHQWR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCC
LPNLWQAGRGRA
CCCHHCCCCCCC
>Mature Secondary Structure
MLFDSSIRKELARSFGATLVVLVTVVMTMMLIRTLGQAARGSVSPSDVMLVMGFTVVGQL
CCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
PTIASLSLFIAVVGTLSRMYRDSEMVIWFASGRGLASLVRPLLRFAWPVMLVIAVLSLLV
CHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
WPWANAQIQQLKTRYEQRSDIDRIAPGEFQESSNGNRVFFIDKGNPAPLAGNDAAQTGSN
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCE
IFIAASDGRQESVTSARSARLQLQDGQRMAVLSDGQRLETSHDRPGLKISEFSEYVMHIG
EEEEECCCCHHHHHHHHHHEEEECCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHC
SAPPGAAEDLAVKTRATHELLLKSLPAYRAELGWRLGLVLAALNFVLLGLAVTSVNPRAA
CCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
RSTSMLFALFAFIVYYNLMTLGQSWVGVGRLGLGSFMLLLHGGMLMLALLVLAVRHHQWR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCC
LPNLWQAGRGRA
CCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]