Definition Verminephrobacter eiseniae EF01-2 chromosome, complete genome.
Accession NC_008786
Length 5,566,749

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The map label for this gene is yjjK [H]

Identifier: 121611663

GI number: 121611663

Start: 5251312

End: 5252973

Strand: Direct

Name: yjjK [H]

Synonym: Veis_4758

Alternate gene names: 121611663

Gene position: 5251312-5252973 (Clockwise)

Preceding gene: 121611660

Following gene: 121611664

Centisome position: 94.33

GC content: 64.32

Gene sequence:

>1662_bases
ATGGCCCAATATGTTTATTCGATGAATCGCGTCTCCAAGACCGTGCCGCCCAAGCGGCAGATCCTCAAGGACATTTCCCT
GAGTTTTTTGCCCGGCGCCAAGATCGGCGTGCTGGGCCTGAACGGCTCGGGCAAATCGACCCTGCTGAAGATCATGGCCG
GTGTCGACAAGGAGATCGAAGGCGAGGCCACCCCGATGCCCGGGATCAAGATCGGCTACCTGCCCCAGGAACCCCAGCTC
AACCCCGAGCACACCGTGCGCGAGAGCGTGCATGAGTCCCTGGGCGAGCTGTTTGCCGCCAAGGCCCGGCTCGAGGAGGT
CTACGCCGCCTACGCCGAGCCGGATGCCGACTTTGACGCGCTGGCCGCCGAGCAGGCCCGCCTGGAGGCCCTGATCGCCA
CCGCCGGCACCGATTCGGAGCACCAACTCGAAATCGCCGCCGACGCGCTGCGCCTGCCCCCCTGGGAGGCCCGGGTGGGG
GTGCTGTCCGGTGGCGAAAAGCGCCGCATCGCGCTGTGCCGGCTGCTGCTGTCCAAGCCCGACATGCTGCTGCTCGACGA
GCCTACCAACCACCTGGACGCCGAGTCCGTCGACTGGCTCGAGCAGTTCCTGCACCGCTTTGCCGGCACCGTCGTGGCCA
TCACCCATGACCGCTACTTCCTGGACAACGCGGCCCAGTGGATTTTGGAACTCGATCGGGGCTACGGCCACCCCTACAAG
GGCAACTACAGCAGTTGGCTGGAGCAAAAGCAGGCCCGCCTGGAGTCTGAAAACAAGGGGGAAGAAGCCCGCGCCAAGGC
GCTCAAGAAGGAGCTCGAATGGGTGCGCCAAAACGCCAAGGGCCGCCAGGCCAAGAGCAAGGCGCGGATCGCCCGCTTCG
AGGAACTGAGCGACTACGAATACCAAAAGCGCAACGAAACCCAGGAGATCTTCATCCCCGTGGCCGAGCGCCTGGGCTCG
CAGGTGATCGAGTTCCACAACGTCAGCAAATCGTTTGGCGCGCGCGTGCTGATCGACAACCTGTCGATGACCATCCCGGC
CGGCGCCATCGTCGGCATCATCGGCCCGAACGGGGCCGGCAAATCCACGCTGTTCAAGCTGATCGCAGGCCGCGAGCAAC
CCGATAGCGGCCAAGTGGTGATCGGCGCCACCGTGAAGATGGCCTTCGTCGACCAGCACCGCGACGCGCTGTCGGACGAC
AAGACCGTCTGGCAGGACATCTCCGGCGGCCTGGACATGATCAACATCGGCAAATTCACGATGGCCAGCCGCGCCTATGC
GGGCCGCTTCAACTTCAACGGCGGCGACCAGCAAAAAAAGGTCGGCCTGCTCTCGGGCGGAGAGCGCGGGCGCCTGCACC
TGGCCAAGACGCTGATTGCGGGCGGCAACCTGCTGCTGCTCGACGAGCCTTCGAACGACCTGGACGTGGAAACCCTGCGC
GCGCTGGAAGACGCGCTGCTCGAATACGCCGGCAGCGTGCTGGTGATCAGCCATGACCGCTGGTTCCTCGACCGCATCGC
CACGCATATCCTGGCCGCCGAAGGCGACAGCCAGTGGACATTCTTCGACGGCAACTACCAGGAATACGAGGCGGACAAGA
AAAAGCGCCTCGGCGAAGAAGGCGCCAAACCCAAACGCATGCGTTTCAAAGCTCTGGGCTGA

Upstream 100 bases:

>100_bases
CTGGATCCCGTCACGGGGCGCATTGTCGCATGGCCCGATAATCCGGGTGTGCGCGCAGAACTTTCTGCGCTGTTTTTCTG
CTTCGCAGCCTGGACAAACA

Downstream 100 bases:

>100_bases
GACACAATGATCGAAGTAAAGTAAGATTTGTAACCGGGAATAATTATTGCACCTCCACACATGACCCTGCTCGCGCTGAA
TTTGACCGCCGCATTGCGCC

Product: putative ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 553; Mature: 552

Protein sequence:

>553_residues
MAQYVYSMNRVSKTVPPKRQILKDISLSFLPGAKIGVLGLNGSGKSTLLKIMAGVDKEIEGEATPMPGIKIGYLPQEPQL
NPEHTVRESVHESLGELFAAKARLEEVYAAYAEPDADFDALAAEQARLEALIATAGTDSEHQLEIAADALRLPPWEARVG
VLSGGEKRRIALCRLLLSKPDMLLLDEPTNHLDAESVDWLEQFLHRFAGTVVAITHDRYFLDNAAQWILELDRGYGHPYK
GNYSSWLEQKQARLESENKGEEARAKALKKELEWVRQNAKGRQAKSKARIARFEELSDYEYQKRNETQEIFIPVAERLGS
QVIEFHNVSKSFGARVLIDNLSMTIPAGAIVGIIGPNGAGKSTLFKLIAGREQPDSGQVVIGATVKMAFVDQHRDALSDD
KTVWQDISGGLDMINIGKFTMASRAYAGRFNFNGGDQQKKVGLLSGGERGRLHLAKTLIAGGNLLLLDEPSNDLDVETLR
ALEDALLEYAGSVLVISHDRWFLDRIATHILAAEGDSQWTFFDGNYQEYEADKKKRLGEEGAKPKRMRFKALG

Sequences:

>Translated_553_residues
MAQYVYSMNRVSKTVPPKRQILKDISLSFLPGAKIGVLGLNGSGKSTLLKIMAGVDKEIEGEATPMPGIKIGYLPQEPQL
NPEHTVRESVHESLGELFAAKARLEEVYAAYAEPDADFDALAAEQARLEALIATAGTDSEHQLEIAADALRLPPWEARVG
VLSGGEKRRIALCRLLLSKPDMLLLDEPTNHLDAESVDWLEQFLHRFAGTVVAITHDRYFLDNAAQWILELDRGYGHPYK
GNYSSWLEQKQARLESENKGEEARAKALKKELEWVRQNAKGRQAKSKARIARFEELSDYEYQKRNETQEIFIPVAERLGS
QVIEFHNVSKSFGARVLIDNLSMTIPAGAIVGIIGPNGAGKSTLFKLIAGREQPDSGQVVIGATVKMAFVDQHRDALSDD
KTVWQDISGGLDMINIGKFTMASRAYAGRFNFNGGDQQKKVGLLSGGERGRLHLAKTLIAGGNLLLLDEPSNDLDVETLR
ALEDALLEYAGSVLVISHDRWFLDRIATHILAAEGDSQWTFFDGNYQEYEADKKKRLGEEGAKPKRMRFKALG
>Mature_552_residues
AQYVYSMNRVSKTVPPKRQILKDISLSFLPGAKIGVLGLNGSGKSTLLKIMAGVDKEIEGEATPMPGIKIGYLPQEPQLN
PEHTVRESVHESLGELFAAKARLEEVYAAYAEPDADFDALAAEQARLEALIATAGTDSEHQLEIAADALRLPPWEARVGV
LSGGEKRRIALCRLLLSKPDMLLLDEPTNHLDAESVDWLEQFLHRFAGTVVAITHDRYFLDNAAQWILELDRGYGHPYKG
NYSSWLEQKQARLESENKGEEARAKALKKELEWVRQNAKGRQAKSKARIARFEELSDYEYQKRNETQEIFIPVAERLGSQ
VIEFHNVSKSFGARVLIDNLSMTIPAGAIVGIIGPNGAGKSTLFKLIAGREQPDSGQVVIGATVKMAFVDQHRDALSDDK
TVWQDISGGLDMINIGKFTMASRAYAGRFNFNGGDQQKKVGLLSGGERGRLHLAKTLIAGGNLLLLDEPSNDLDVETLRA
LEDALLEYAGSVLVISHDRWFLDRIATHILAAEGDSQWTFFDGNYQEYEADKKKRLGEEGAKPKRMRFKALG

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=548, Percent_Identity=27.3722627737226, Blast_Score=189, Evalue=7e-48,
Organism=Homo sapiens, GI27881506, Length=544, Percent_Identity=30.1470588235294, Blast_Score=177, Evalue=2e-44,
Organism=Homo sapiens, GI10947137, Length=544, Percent_Identity=30.1470588235294, Blast_Score=177, Evalue=2e-44,
Organism=Homo sapiens, GI10947135, Length=548, Percent_Identity=28.2846715328467, Blast_Score=164, Evalue=3e-40,
Organism=Homo sapiens, GI69354671, Length=548, Percent_Identity=28.2846715328467, Blast_Score=163, Evalue=3e-40,
Organism=Homo sapiens, GI171184400, Length=201, Percent_Identity=29.3532338308458, Blast_Score=68, Evalue=3e-11,
Organism=Escherichia coli, GI2367384, Length=553, Percent_Identity=69.2585895117541, Blast_Score=795, Evalue=0.0,
Organism=Escherichia coli, GI1787182, Length=512, Percent_Identity=34.765625, Blast_Score=265, Evalue=5e-72,
Organism=Escherichia coli, GI1787041, Length=521, Percent_Identity=32.2456813819578, Blast_Score=240, Evalue=2e-64,
Organism=Escherichia coli, GI1789751, Length=554, Percent_Identity=31.5884476534296, Blast_Score=238, Evalue=9e-64,
Organism=Escherichia coli, GI87081782, Length=567, Percent_Identity=25.2204585537919, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI87081709, Length=191, Percent_Identity=31.413612565445, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI48994943, Length=489, Percent_Identity=24.5398773006135, Blast_Score=92, Evalue=9e-20,
Organism=Escherichia coli, GI87081791, Length=199, Percent_Identity=32.1608040201005, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787164, Length=190, Percent_Identity=31.0526315789474, Blast_Score=86, Evalue=7e-18,
Organism=Escherichia coli, GI1787029, Length=232, Percent_Identity=28.0172413793103, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788761, Length=196, Percent_Identity=31.6326530612245, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1788165, Length=189, Percent_Identity=32.8042328042328, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1786398, Length=209, Percent_Identity=29.1866028708134, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1786253, Length=222, Percent_Identity=31.981981981982, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1790467, Length=165, Percent_Identity=31.5151515151515, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1786563, Length=198, Percent_Identity=28.7878787878788, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787712, Length=193, Percent_Identity=29.5336787564767, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787370, Length=194, Percent_Identity=28.3505154639175, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788225, Length=213, Percent_Identity=25.3521126760563, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1790739, Length=196, Percent_Identity=27.0408163265306, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1789873, Length=212, Percent_Identity=27.3584905660377, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI87081834, Length=208, Percent_Identity=25, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789891, Length=201, Percent_Identity=24.8756218905473, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1786703, Length=228, Percent_Identity=28.9473684210526, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1787758, Length=199, Percent_Identity=28.643216080402, Blast_Score=64, Evalue=4e-11,
Organism=Escherichia coli, GI87082267, Length=210, Percent_Identity=25.2380952380952, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1787112, Length=238, Percent_Identity=31.5126050420168, Blast_Score=63, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=550, Percent_Identity=27.8181818181818, Blast_Score=199, Evalue=3e-51,
Organism=Caenorhabditis elegans, GI17553372, Length=534, Percent_Identity=29.9625468164794, Blast_Score=184, Evalue=8e-47,
Organism=Caenorhabditis elegans, GI17555318, Length=557, Percent_Identity=28.1867145421903, Blast_Score=169, Evalue=5e-42,
Organism=Caenorhabditis elegans, GI17541710, Length=216, Percent_Identity=32.4074074074074, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71992290, Length=203, Percent_Identity=26.6009852216749, Blast_Score=69, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI193211017, Length=233, Percent_Identity=27.8969957081545, Blast_Score=66, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17511077, Length=204, Percent_Identity=26.4705882352941, Blast_Score=66, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI193211015, Length=226, Percent_Identity=28.3185840707965, Blast_Score=66, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71996809, Length=233, Percent_Identity=27.8969957081545, Blast_Score=66, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6320874, Length=537, Percent_Identity=30.5400372439479, Blast_Score=193, Evalue=5e-50,
Organism=Saccharomyces cerevisiae, GI6321121, Length=541, Percent_Identity=26.8022181146026, Blast_Score=176, Evalue=6e-45,
Organism=Saccharomyces cerevisiae, GI6325030, Length=378, Percent_Identity=27.2486772486773, Blast_Score=115, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6323278, Length=363, Percent_Identity=25.6198347107438, Blast_Score=109, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6324314, Length=238, Percent_Identity=28.9915966386555, Blast_Score=104, Evalue=3e-23,
Organism=Saccharomyces cerevisiae, GI6323959, Length=232, Percent_Identity=27.5862068965517, Blast_Score=70, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24666836, Length=541, Percent_Identity=27.9112754158965, Blast_Score=198, Evalue=7e-51,
Organism=Drosophila melanogaster, GI24642252, Length=553, Percent_Identity=28.0289330922242, Blast_Score=187, Evalue=1e-47,
Organism=Drosophila melanogaster, GI18859989, Length=553, Percent_Identity=28.0289330922242, Blast_Score=187, Evalue=1e-47,
Organism=Drosophila melanogaster, GI24641342, Length=547, Percent_Identity=28.5191956124314, Blast_Score=178, Evalue=9e-45,
Organism=Drosophila melanogaster, GI24648279, Length=186, Percent_Identity=29.0322580645161, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI161078426, Length=186, Percent_Identity=29.0322580645161, Blast_Score=67, Evalue=4e-11,
Organism=Drosophila melanogaster, GI23397593, Length=214, Percent_Identity=30.3738317757009, Blast_Score=66, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022374
- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 61270; Mature: 61139

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQYVYSMNRVSKTVPPKRQILKDISLSFLPGAKIGVLGLNGSGKSTLLKIMAGVDKEIE
CCCHHHHHHHHHHCCCHHHHHHHHCCHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCC
GEATPMPGIKIGYLPQEPQLNPEHTVRESVHESLGELFAAKARLEEVYAAYAEPDADFDA
CCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
LAAEQARLEALIATAGTDSEHQLEIAADALRLPPWEARVGVLSGGEKRRIALCRLLLSKP
HHHHHHHHHHHHHCCCCCCCCEEEEEHHHHCCCCHHHCEEECCCCCHHHHHHHHHHHCCC
DMLLLDEPTNHLDAESVDWLEQFLHRFAGTVVAITHDRYFLDNAAQWILELDRGYGHPYK
CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCC
GNYSSWLEQKQARLESENKGEEARAKALKKELEWVRQNAKGRQAKSKARIARFEELSDYE
CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCH
YQKRNETQEIFIPVAERLGSQVIEFHNVSKSFGARVLIDNLSMTIPAGAIVGIIGPNGAG
HHHCCCCHHEEEHHHHHHHHHHHHHHHCHHHHCCEEEEECCCEEECCCEEEEEECCCCCC
KSTLFKLIAGREQPDSGQVVIGATVKMAFVDQHRDALSDDKTVWQDISGGLDMINIGKFT
HHHHHHHHHCCCCCCCCCEEEEEEEEEEHHHHHHHHCCCCHHHHHHHCCCCCEEECCCHH
MASRAYAGRFNFNGGDQQKKVGLLSGGERGRLHLAKTLIAGGNLLLLDEPSNDLDVETLR
HHHHHCCCCCCCCCCCCHHEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCHHHHH
ALEDALLEYAGSVLVISHDRWFLDRIATHILAAEGDSQWTFFDGNYQEYEADKKKRLGEE
HHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHC
GAKPKRMRFKALG
CCCCHHCEEECCC
>Mature Secondary Structure 
AQYVYSMNRVSKTVPPKRQILKDISLSFLPGAKIGVLGLNGSGKSTLLKIMAGVDKEIE
CCHHHHHHHHHHCCCHHHHHHHHCCHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCC
GEATPMPGIKIGYLPQEPQLNPEHTVRESVHESLGELFAAKARLEEVYAAYAEPDADFDA
CCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
LAAEQARLEALIATAGTDSEHQLEIAADALRLPPWEARVGVLSGGEKRRIALCRLLLSKP
HHHHHHHHHHHHHCCCCCCCCEEEEEHHHHCCCCHHHCEEECCCCCHHHHHHHHHHHCCC
DMLLLDEPTNHLDAESVDWLEQFLHRFAGTVVAITHDRYFLDNAAQWILELDRGYGHPYK
CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCC
GNYSSWLEQKQARLESENKGEEARAKALKKELEWVRQNAKGRQAKSKARIARFEELSDYE
CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCH
YQKRNETQEIFIPVAERLGSQVIEFHNVSKSFGARVLIDNLSMTIPAGAIVGIIGPNGAG
HHHCCCCHHEEEHHHHHHHHHHHHHHHCHHHHCCEEEEECCCEEECCCEEEEEECCCCCC
KSTLFKLIAGREQPDSGQVVIGATVKMAFVDQHRDALSDDKTVWQDISGGLDMINIGKFT
HHHHHHHHHCCCCCCCCCEEEEEEEEEEHHHHHHHHCCCCHHHHHHHCCCCCEEECCCHH
MASRAYAGRFNFNGGDQQKKVGLLSGGERGRLHLAKTLIAGGNLLLLDEPSNDLDVETLR
HHHHHCCCCCCCCCCCCHHEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCHHHHH
ALEDALLEYAGSVLVISHDRWFLDRIATHILAAEGDSQWTFFDGNYQEYEADKKKRLGEE
HHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHC
GAKPKRMRFKALG
CCCCHHCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]