| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
Click here to switch to the map view.
The map label for this gene is yjjK [H]
Identifier: 121611663
GI number: 121611663
Start: 5251312
End: 5252973
Strand: Direct
Name: yjjK [H]
Synonym: Veis_4758
Alternate gene names: 121611663
Gene position: 5251312-5252973 (Clockwise)
Preceding gene: 121611660
Following gene: 121611664
Centisome position: 94.33
GC content: 64.32
Gene sequence:
>1662_bases ATGGCCCAATATGTTTATTCGATGAATCGCGTCTCCAAGACCGTGCCGCCCAAGCGGCAGATCCTCAAGGACATTTCCCT GAGTTTTTTGCCCGGCGCCAAGATCGGCGTGCTGGGCCTGAACGGCTCGGGCAAATCGACCCTGCTGAAGATCATGGCCG GTGTCGACAAGGAGATCGAAGGCGAGGCCACCCCGATGCCCGGGATCAAGATCGGCTACCTGCCCCAGGAACCCCAGCTC AACCCCGAGCACACCGTGCGCGAGAGCGTGCATGAGTCCCTGGGCGAGCTGTTTGCCGCCAAGGCCCGGCTCGAGGAGGT CTACGCCGCCTACGCCGAGCCGGATGCCGACTTTGACGCGCTGGCCGCCGAGCAGGCCCGCCTGGAGGCCCTGATCGCCA CCGCCGGCACCGATTCGGAGCACCAACTCGAAATCGCCGCCGACGCGCTGCGCCTGCCCCCCTGGGAGGCCCGGGTGGGG GTGCTGTCCGGTGGCGAAAAGCGCCGCATCGCGCTGTGCCGGCTGCTGCTGTCCAAGCCCGACATGCTGCTGCTCGACGA GCCTACCAACCACCTGGACGCCGAGTCCGTCGACTGGCTCGAGCAGTTCCTGCACCGCTTTGCCGGCACCGTCGTGGCCA TCACCCATGACCGCTACTTCCTGGACAACGCGGCCCAGTGGATTTTGGAACTCGATCGGGGCTACGGCCACCCCTACAAG GGCAACTACAGCAGTTGGCTGGAGCAAAAGCAGGCCCGCCTGGAGTCTGAAAACAAGGGGGAAGAAGCCCGCGCCAAGGC GCTCAAGAAGGAGCTCGAATGGGTGCGCCAAAACGCCAAGGGCCGCCAGGCCAAGAGCAAGGCGCGGATCGCCCGCTTCG AGGAACTGAGCGACTACGAATACCAAAAGCGCAACGAAACCCAGGAGATCTTCATCCCCGTGGCCGAGCGCCTGGGCTCG CAGGTGATCGAGTTCCACAACGTCAGCAAATCGTTTGGCGCGCGCGTGCTGATCGACAACCTGTCGATGACCATCCCGGC CGGCGCCATCGTCGGCATCATCGGCCCGAACGGGGCCGGCAAATCCACGCTGTTCAAGCTGATCGCAGGCCGCGAGCAAC CCGATAGCGGCCAAGTGGTGATCGGCGCCACCGTGAAGATGGCCTTCGTCGACCAGCACCGCGACGCGCTGTCGGACGAC AAGACCGTCTGGCAGGACATCTCCGGCGGCCTGGACATGATCAACATCGGCAAATTCACGATGGCCAGCCGCGCCTATGC GGGCCGCTTCAACTTCAACGGCGGCGACCAGCAAAAAAAGGTCGGCCTGCTCTCGGGCGGAGAGCGCGGGCGCCTGCACC TGGCCAAGACGCTGATTGCGGGCGGCAACCTGCTGCTGCTCGACGAGCCTTCGAACGACCTGGACGTGGAAACCCTGCGC GCGCTGGAAGACGCGCTGCTCGAATACGCCGGCAGCGTGCTGGTGATCAGCCATGACCGCTGGTTCCTCGACCGCATCGC CACGCATATCCTGGCCGCCGAAGGCGACAGCCAGTGGACATTCTTCGACGGCAACTACCAGGAATACGAGGCGGACAAGA AAAAGCGCCTCGGCGAAGAAGGCGCCAAACCCAAACGCATGCGTTTCAAAGCTCTGGGCTGA
Upstream 100 bases:
>100_bases CTGGATCCCGTCACGGGGCGCATTGTCGCATGGCCCGATAATCCGGGTGTGCGCGCAGAACTTTCTGCGCTGTTTTTCTG CTTCGCAGCCTGGACAAACA
Downstream 100 bases:
>100_bases GACACAATGATCGAAGTAAAGTAAGATTTGTAACCGGGAATAATTATTGCACCTCCACACATGACCCTGCTCGCGCTGAA TTTGACCGCCGCATTGCGCC
Product: putative ABC transporter ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 553; Mature: 552
Protein sequence:
>553_residues MAQYVYSMNRVSKTVPPKRQILKDISLSFLPGAKIGVLGLNGSGKSTLLKIMAGVDKEIEGEATPMPGIKIGYLPQEPQL NPEHTVRESVHESLGELFAAKARLEEVYAAYAEPDADFDALAAEQARLEALIATAGTDSEHQLEIAADALRLPPWEARVG VLSGGEKRRIALCRLLLSKPDMLLLDEPTNHLDAESVDWLEQFLHRFAGTVVAITHDRYFLDNAAQWILELDRGYGHPYK GNYSSWLEQKQARLESENKGEEARAKALKKELEWVRQNAKGRQAKSKARIARFEELSDYEYQKRNETQEIFIPVAERLGS QVIEFHNVSKSFGARVLIDNLSMTIPAGAIVGIIGPNGAGKSTLFKLIAGREQPDSGQVVIGATVKMAFVDQHRDALSDD KTVWQDISGGLDMINIGKFTMASRAYAGRFNFNGGDQQKKVGLLSGGERGRLHLAKTLIAGGNLLLLDEPSNDLDVETLR ALEDALLEYAGSVLVISHDRWFLDRIATHILAAEGDSQWTFFDGNYQEYEADKKKRLGEEGAKPKRMRFKALG
Sequences:
>Translated_553_residues MAQYVYSMNRVSKTVPPKRQILKDISLSFLPGAKIGVLGLNGSGKSTLLKIMAGVDKEIEGEATPMPGIKIGYLPQEPQL NPEHTVRESVHESLGELFAAKARLEEVYAAYAEPDADFDALAAEQARLEALIATAGTDSEHQLEIAADALRLPPWEARVG VLSGGEKRRIALCRLLLSKPDMLLLDEPTNHLDAESVDWLEQFLHRFAGTVVAITHDRYFLDNAAQWILELDRGYGHPYK GNYSSWLEQKQARLESENKGEEARAKALKKELEWVRQNAKGRQAKSKARIARFEELSDYEYQKRNETQEIFIPVAERLGS QVIEFHNVSKSFGARVLIDNLSMTIPAGAIVGIIGPNGAGKSTLFKLIAGREQPDSGQVVIGATVKMAFVDQHRDALSDD KTVWQDISGGLDMINIGKFTMASRAYAGRFNFNGGDQQKKVGLLSGGERGRLHLAKTLIAGGNLLLLDEPSNDLDVETLR ALEDALLEYAGSVLVISHDRWFLDRIATHILAAEGDSQWTFFDGNYQEYEADKKKRLGEEGAKPKRMRFKALG >Mature_552_residues AQYVYSMNRVSKTVPPKRQILKDISLSFLPGAKIGVLGLNGSGKSTLLKIMAGVDKEIEGEATPMPGIKIGYLPQEPQLN PEHTVRESVHESLGELFAAKARLEEVYAAYAEPDADFDALAAEQARLEALIATAGTDSEHQLEIAADALRLPPWEARVGV LSGGEKRRIALCRLLLSKPDMLLLDEPTNHLDAESVDWLEQFLHRFAGTVVAITHDRYFLDNAAQWILELDRGYGHPYKG NYSSWLEQKQARLESENKGEEARAKALKKELEWVRQNAKGRQAKSKARIARFEELSDYEYQKRNETQEIFIPVAERLGSQ VIEFHNVSKSFGARVLIDNLSMTIPAGAIVGIIGPNGAGKSTLFKLIAGREQPDSGQVVIGATVKMAFVDQHRDALSDDK TVWQDISGGLDMINIGKFTMASRAYAGRFNFNGGDQQKKVGLLSGGERGRLHLAKTLIAGGNLLLLDEPSNDLDVETLRA LEDALLEYAGSVLVISHDRWFLDRIATHILAAEGDSQWTFFDGNYQEYEADKKKRLGEEGAKPKRMRFKALG
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=548, Percent_Identity=27.3722627737226, Blast_Score=189, Evalue=7e-48, Organism=Homo sapiens, GI27881506, Length=544, Percent_Identity=30.1470588235294, Blast_Score=177, Evalue=2e-44, Organism=Homo sapiens, GI10947137, Length=544, Percent_Identity=30.1470588235294, Blast_Score=177, Evalue=2e-44, Organism=Homo sapiens, GI10947135, Length=548, Percent_Identity=28.2846715328467, Blast_Score=164, Evalue=3e-40, Organism=Homo sapiens, GI69354671, Length=548, Percent_Identity=28.2846715328467, Blast_Score=163, Evalue=3e-40, Organism=Homo sapiens, GI171184400, Length=201, Percent_Identity=29.3532338308458, Blast_Score=68, Evalue=3e-11, Organism=Escherichia coli, GI2367384, Length=553, Percent_Identity=69.2585895117541, Blast_Score=795, Evalue=0.0, Organism=Escherichia coli, GI1787182, Length=512, Percent_Identity=34.765625, Blast_Score=265, Evalue=5e-72, Organism=Escherichia coli, GI1787041, Length=521, Percent_Identity=32.2456813819578, Blast_Score=240, Evalue=2e-64, Organism=Escherichia coli, GI1789751, Length=554, Percent_Identity=31.5884476534296, Blast_Score=238, Evalue=9e-64, Organism=Escherichia coli, GI87081782, Length=567, Percent_Identity=25.2204585537919, Blast_Score=117, Evalue=2e-27, Organism=Escherichia coli, GI87081709, Length=191, Percent_Identity=31.413612565445, Blast_Score=103, Evalue=4e-23, Organism=Escherichia coli, GI48994943, Length=489, Percent_Identity=24.5398773006135, Blast_Score=92, Evalue=9e-20, Organism=Escherichia coli, GI87081791, Length=199, Percent_Identity=32.1608040201005, Blast_Score=87, Evalue=3e-18, Organism=Escherichia coli, GI1787164, Length=190, Percent_Identity=31.0526315789474, Blast_Score=86, Evalue=7e-18, Organism=Escherichia coli, GI1787029, Length=232, Percent_Identity=28.0172413793103, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1788761, Length=196, Percent_Identity=31.6326530612245, Blast_Score=84, Evalue=3e-17, Organism=Escherichia coli, GI1788165, Length=189, Percent_Identity=32.8042328042328, Blast_Score=81, Evalue=2e-16, Organism=Escherichia coli, GI1786398, Length=209, Percent_Identity=29.1866028708134, Blast_Score=80, Evalue=3e-16, Organism=Escherichia coli, GI1786253, Length=222, Percent_Identity=31.981981981982, Blast_Score=73, Evalue=4e-14, Organism=Escherichia coli, GI1790467, Length=165, Percent_Identity=31.5151515151515, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1786563, Length=198, Percent_Identity=28.7878787878788, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1787712, Length=193, Percent_Identity=29.5336787564767, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1787370, Length=194, Percent_Identity=28.3505154639175, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI1788225, Length=213, Percent_Identity=25.3521126760563, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI1790739, Length=196, Percent_Identity=27.0408163265306, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI1789873, Length=212, Percent_Identity=27.3584905660377, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI87081834, Length=208, Percent_Identity=25, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1789891, Length=201, Percent_Identity=24.8756218905473, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI1786703, Length=228, Percent_Identity=28.9473684210526, Blast_Score=64, Evalue=3e-11, Organism=Escherichia coli, GI1787758, Length=199, Percent_Identity=28.643216080402, Blast_Score=64, Evalue=4e-11, Organism=Escherichia coli, GI87082267, Length=210, Percent_Identity=25.2380952380952, Blast_Score=63, Evalue=4e-11, Organism=Escherichia coli, GI1787112, Length=238, Percent_Identity=31.5126050420168, Blast_Score=63, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17559834, Length=550, Percent_Identity=27.8181818181818, Blast_Score=199, Evalue=3e-51, Organism=Caenorhabditis elegans, GI17553372, Length=534, Percent_Identity=29.9625468164794, Blast_Score=184, Evalue=8e-47, Organism=Caenorhabditis elegans, GI17555318, Length=557, Percent_Identity=28.1867145421903, Blast_Score=169, Evalue=5e-42, Organism=Caenorhabditis elegans, GI17541710, Length=216, Percent_Identity=32.4074074074074, Blast_Score=70, Evalue=3e-12, Organism=Caenorhabditis elegans, GI71992290, Length=203, Percent_Identity=26.6009852216749, Blast_Score=69, Evalue=9e-12, Organism=Caenorhabditis elegans, GI193211017, Length=233, Percent_Identity=27.8969957081545, Blast_Score=66, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17511077, Length=204, Percent_Identity=26.4705882352941, Blast_Score=66, Evalue=5e-11, Organism=Caenorhabditis elegans, GI193211015, Length=226, Percent_Identity=28.3185840707965, Blast_Score=66, Evalue=5e-11, Organism=Caenorhabditis elegans, GI71996809, Length=233, Percent_Identity=27.8969957081545, Blast_Score=66, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6320874, Length=537, Percent_Identity=30.5400372439479, Blast_Score=193, Evalue=5e-50, Organism=Saccharomyces cerevisiae, GI6321121, Length=541, Percent_Identity=26.8022181146026, Blast_Score=176, Evalue=6e-45, Organism=Saccharomyces cerevisiae, GI6325030, Length=378, Percent_Identity=27.2486772486773, Blast_Score=115, Evalue=2e-26, Organism=Saccharomyces cerevisiae, GI6323278, Length=363, Percent_Identity=25.6198347107438, Blast_Score=109, Evalue=1e-24, Organism=Saccharomyces cerevisiae, GI6324314, Length=238, Percent_Identity=28.9915966386555, Blast_Score=104, Evalue=3e-23, Organism=Saccharomyces cerevisiae, GI6323959, Length=232, Percent_Identity=27.5862068965517, Blast_Score=70, Evalue=7e-13, Organism=Drosophila melanogaster, GI24666836, Length=541, Percent_Identity=27.9112754158965, Blast_Score=198, Evalue=7e-51, Organism=Drosophila melanogaster, GI24642252, Length=553, Percent_Identity=28.0289330922242, Blast_Score=187, Evalue=1e-47, Organism=Drosophila melanogaster, GI18859989, Length=553, Percent_Identity=28.0289330922242, Blast_Score=187, Evalue=1e-47, Organism=Drosophila melanogaster, GI24641342, Length=547, Percent_Identity=28.5191956124314, Blast_Score=178, Evalue=9e-45, Organism=Drosophila melanogaster, GI24648279, Length=186, Percent_Identity=29.0322580645161, Blast_Score=67, Evalue=3e-11, Organism=Drosophila melanogaster, GI161078426, Length=186, Percent_Identity=29.0322580645161, Blast_Score=67, Evalue=4e-11, Organism=Drosophila melanogaster, GI23397593, Length=214, Percent_Identity=30.3738317757009, Blast_Score=66, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022374 - InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 61270; Mature: 61139
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQYVYSMNRVSKTVPPKRQILKDISLSFLPGAKIGVLGLNGSGKSTLLKIMAGVDKEIE CCCHHHHHHHHHHCCCHHHHHHHHCCHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCC GEATPMPGIKIGYLPQEPQLNPEHTVRESVHESLGELFAAKARLEEVYAAYAEPDADFDA CCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH LAAEQARLEALIATAGTDSEHQLEIAADALRLPPWEARVGVLSGGEKRRIALCRLLLSKP HHHHHHHHHHHHHCCCCCCCCEEEEEHHHHCCCCHHHCEEECCCCCHHHHHHHHHHHCCC DMLLLDEPTNHLDAESVDWLEQFLHRFAGTVVAITHDRYFLDNAAQWILELDRGYGHPYK CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCC GNYSSWLEQKQARLESENKGEEARAKALKKELEWVRQNAKGRQAKSKARIARFEELSDYE CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCH YQKRNETQEIFIPVAERLGSQVIEFHNVSKSFGARVLIDNLSMTIPAGAIVGIIGPNGAG HHHCCCCHHEEEHHHHHHHHHHHHHHHCHHHHCCEEEEECCCEEECCCEEEEEECCCCCC KSTLFKLIAGREQPDSGQVVIGATVKMAFVDQHRDALSDDKTVWQDISGGLDMINIGKFT HHHHHHHHHCCCCCCCCCEEEEEEEEEEHHHHHHHHCCCCHHHHHHHCCCCCEEECCCHH MASRAYAGRFNFNGGDQQKKVGLLSGGERGRLHLAKTLIAGGNLLLLDEPSNDLDVETLR HHHHHCCCCCCCCCCCCHHEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCHHHHH ALEDALLEYAGSVLVISHDRWFLDRIATHILAAEGDSQWTFFDGNYQEYEADKKKRLGEE HHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHC GAKPKRMRFKALG CCCCHHCEEECCC >Mature Secondary Structure AQYVYSMNRVSKTVPPKRQILKDISLSFLPGAKIGVLGLNGSGKSTLLKIMAGVDKEIE CCHHHHHHHHHHCCCHHHHHHHHCCHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCC GEATPMPGIKIGYLPQEPQLNPEHTVRESVHESLGELFAAKARLEEVYAAYAEPDADFDA CCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH LAAEQARLEALIATAGTDSEHQLEIAADALRLPPWEARVGVLSGGEKRRIALCRLLLSKP HHHHHHHHHHHHHCCCCCCCCEEEEEHHHHCCCCHHHCEEECCCCCHHHHHHHHHHHCCC DMLLLDEPTNHLDAESVDWLEQFLHRFAGTVVAITHDRYFLDNAAQWILELDRGYGHPYK CEEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCC GNYSSWLEQKQARLESENKGEEARAKALKKELEWVRQNAKGRQAKSKARIARFEELSDYE CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCH YQKRNETQEIFIPVAERLGSQVIEFHNVSKSFGARVLIDNLSMTIPAGAIVGIIGPNGAG HHHCCCCHHEEEHHHHHHHHHHHHHHHCHHHHCCEEEEECCCEEECCCEEEEEECCCCCC KSTLFKLIAGREQPDSGQVVIGATVKMAFVDQHRDALSDDKTVWQDISGGLDMINIGKFT HHHHHHHHHCCCCCCCCCEEEEEEEEEEHHHHHHHHCCCCHHHHHHHCCCCCEEECCCHH MASRAYAGRFNFNGGDQQKKVGLLSGGERGRLHLAKTLIAGGNLLLLDEPSNDLDVETLR HHHHHCCCCCCCCCCCCHHEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCHHHHH ALEDALLEYAGSVLVISHDRWFLDRIATHILAAEGDSQWTFFDGNYQEYEADKKKRLGEE HHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHC GAKPKRMRFKALG CCCCHHCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]