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The map label for this gene is yvbU [H]

Identifier: 121611641

GI number: 121611641

Start: 5225726

End: 5226643

Strand: Direct

Name: yvbU [H]

Synonym: Veis_4735

Alternate gene names: 121611641

Gene position: 5225726-5226643 (Clockwise)

Preceding gene: 121611633

Following gene: 121611644

Centisome position: 93.87

GC content: 60.89

Gene sequence:

>918_bases
ATGAAATCCGAATACCTGCAAGACATCGCCTTGCGCTATTTTCTGGAAGTGGTGCGCAGCGGTTCCATCGCCGCCGCCTC
GCAGCGCCTGAATGTCGCCAGTTCGGCCATCAGCCGCCAGATCAGCAGCCTGGAGGGATTGCTCGACACGGTGCTGTTCG
AGCGGCGACCGCGCGGCATGGTGCTGAGCGTCGGCGGCGAGATGCTGGCAGCGCATGCGCAAAAGGTAATGCTGGAGTCC
GATCGCGTGGTGGCCGACTTGCTGGCCTTGAAGGGCTTGCGCAGGGGGCGTGTTCGCGTGGCGGCGTCGGAGGGACTCGG
CGTGGACTTCGTGCCGCGCCTGATTCGCGCTTTTCAGCAGCAGTATCCGGCGATTCAGTTTCAGGTCTATGTCGGCCCGC
CGGCGCTGGTATCGCGCCATGTGCGCGACGGCAATGCCGACATCGGCGTGACTTTCAACCGACTGCCCGAACCCTTTATC
AAGATCGTGTACCAAAAACCGGCACCGGTCTTGCTCTTGATGCGCAACGGCCATCCGCTGAGCAAATTCAAGAGCGTTGC
GCTGTCACAATTGCACCCCTACCCGCTGGCGCTGCCCGACCCGGATACCACGCTGCGGCAGTTGTTTGATTTGGCATGCA
GCCACCAGCAATTGCTGTTCGAGCCAGCCCTGACCAGCAACTATATCCAGACGCTGCACAATTATCTGCTGGAAGGCGAC
GCACTCTCGATCACCGGCGAAGTGACCGTGCGCTACCGCATCGCCAGAGGCGAACTGACCATGGTGCCAATCCGCGACCG
GGTGTTGAATGGCCGTTACGTCGAGGTGCAAACCCTGTCGGGACGCACTTTGCCGCGCATTGCGGAAATCTTTCTGGCGC
ATTTGCTGGGGGAACTGAATAAGGGCGAGGCTGGATAA

Upstream 100 bases:

>100_bases
GCATTGCCAAAATGAGAAGGCAGGGTTTTCAGGGCTGCGCTGAATCAACCGCCGCGCAACCGTCACGGCGCCAGCTTCAC
ACTGCTTGCAAAGGCCAGAC

Downstream 100 bases:

>100_bases
TCATATTCCAATCAGGCTATCGGGTTCGCCCGTACAGACATCCACTGCGCCATAGGCGTAGGTGTATTCGTGCGTCGACA
GGCCTTGGCCAATTGGGTGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MKSEYLQDIALRYFLEVVRSGSIAAASQRLNVASSAISRQISSLEGLLDTVLFERRPRGMVLSVGGEMLAAHAQKVMLES
DRVVADLLALKGLRRGRVRVAASEGLGVDFVPRLIRAFQQQYPAIQFQVYVGPPALVSRHVRDGNADIGVTFNRLPEPFI
KIVYQKPAPVLLLMRNGHPLSKFKSVALSQLHPYPLALPDPDTTLRQLFDLACSHQQLLFEPALTSNYIQTLHNYLLEGD
ALSITGEVTVRYRIARGELTMVPIRDRVLNGRYVEVQTLSGRTLPRIAEIFLAHLLGELNKGEAG

Sequences:

>Translated_305_residues
MKSEYLQDIALRYFLEVVRSGSIAAASQRLNVASSAISRQISSLEGLLDTVLFERRPRGMVLSVGGEMLAAHAQKVMLES
DRVVADLLALKGLRRGRVRVAASEGLGVDFVPRLIRAFQQQYPAIQFQVYVGPPALVSRHVRDGNADIGVTFNRLPEPFI
KIVYQKPAPVLLLMRNGHPLSKFKSVALSQLHPYPLALPDPDTTLRQLFDLACSHQQLLFEPALTSNYIQTLHNYLLEGD
ALSITGEVTVRYRIARGELTMVPIRDRVLNGRYVEVQTLSGRTLPRIAEIFLAHLLGELNKGEAG
>Mature_305_residues
MKSEYLQDIALRYFLEVVRSGSIAAASQRLNVASSAISRQISSLEGLLDTVLFERRPRGMVLSVGGEMLAAHAQKVMLES
DRVVADLLALKGLRRGRVRVAASEGLGVDFVPRLIRAFQQQYPAIQFQVYVGPPALVSRHVRDGNADIGVTFNRLPEPFI
KIVYQKPAPVLLLMRNGHPLSKFKSVALSQLHPYPLALPDPDTTLRQLFDLACSHQQLLFEPALTSNYIQTLHNYLLEGD
ALSITGEVTVRYRIARGELTMVPIRDRVLNGRYVEVQTLSGRTLPRIAEIFLAHLLGELNKGEAG

Specific function: Could Be The Regulator Of The Abg Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=207, Percent_Identity=28.9855072463768, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI157672245, Length=218, Percent_Identity=27.9816513761468, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788748, Length=202, Percent_Identity=27.2277227722772, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI87081904, Length=256, Percent_Identity=27.34375, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI145693105, Length=187, Percent_Identity=25.1336898395722, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786401, Length=274, Percent_Identity=26.6423357664234, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1789440, Length=165, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788481, Length=263, Percent_Identity=24.3346007604563, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788296, Length=228, Percent_Identity=23.2456140350877, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33860; Mature: 33860

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSEYLQDIALRYFLEVVRSGSIAAASQRLNVASSAISRQISSLEGLLDTVLFERRPRGM
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
VLSVGGEMLAAHAQKVMLESDRVVADLLALKGLRRGRVRVAASEGLGVDFVPRLIRAFQQ
EEECCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHH
QYPAIQFQVYVGPPALVSRHVRDGNADIGVTFNRLPEPFIKIVYQKPAPVLLLMRNGHPL
HCCCEEEEEEECCHHHHHHHHCCCCCCEEEEHHCCCCHHHHHHCCCCCCEEEEEECCCCH
SKFKSVALSQLHPYPLALPDPDTTLRQLFDLACSHQQLLFEPALTSNYIQTLHNYLLEGD
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHCCC
ALSITGEVTVRYRIARGELTMVPIRDRVLNGRYVEVQTLSGRTLPRIAEIFLAHLLGELN
EEEEEEEEEEEEEEECCCEEEEEHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCC
KGEAG
CCCCC
>Mature Secondary Structure
MKSEYLQDIALRYFLEVVRSGSIAAASQRLNVASSAISRQISSLEGLLDTVLFERRPRGM
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
VLSVGGEMLAAHAQKVMLESDRVVADLLALKGLRRGRVRVAASEGLGVDFVPRLIRAFQQ
EEECCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHH
QYPAIQFQVYVGPPALVSRHVRDGNADIGVTFNRLPEPFIKIVYQKPAPVLLLMRNGHPL
HCCCEEEEEEECCHHHHHHHHCCCCCCEEEEHHCCCCHHHHHHCCCCCCEEEEEECCCCH
SKFKSVALSQLHPYPLALPDPDTTLRQLFDLACSHQQLLFEPALTSNYIQTLHNYLLEGD
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHHHCCC
ALSITGEVTVRYRIARGELTMVPIRDRVLNGRYVEVQTLSGRTLPRIAEIFLAHLLGELN
EEEEEEEEEEEEEEECCCEEEEEHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCC
KGEAG
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]