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The map label for this gene is ybfL [H]

Identifier: 121611613

GI number: 121611613

Start: 5195453

End: 5195860

Strand: Direct

Name: ybfL [H]

Synonym: Veis_4705

Alternate gene names: 121611613

Gene position: 5195453-5195860 (Clockwise)

Preceding gene: 121611612

Following gene: 121611616

Centisome position: 93.33

GC content: 58.82

Gene sequence:

>408_bases
GTGGGCGATCTGGATTGGCTGGCTACCCTGGGGCTCAAGGAACGCTGGAAGAAGATCACTTCGGTGGCCTGTATCGACTC
CAGCCGCGTGATCGGCAGCAAGACCGAGACAGATCGGCGCTATGTGATCAGTTCACTGCCCGCCGACAGTGAGCGCATTT
TGCACGCTGTGCGCATGCACTGGGACATTGAAAATGGCTTGCACTGGTGCCTGGATGTGACCTTTGGAGAGGACGCCTGC
CCCATCCGGCTACGCAATGCCGCACTCGACTTCTCATTGCTGCGCCGTGCCGCCATGAACCTGTTTCGTGCTGACCACTC
TCGCGCCATGGGCCTGCCAAAAAAACGCAAGGCCGCTGCCTGGAACCCGGACTACCTCGCCAATATCCTTCATCTGCGGG
AAATTTGA

Upstream 100 bases:

>100_bases
TCGTGCAGATCACCGGCGAGAGCTTCAGGCTGAAGGACAAGCGCAAGGCCGGCCAGGCAGCAAGGAGGATGGCCGCATTG
AAACCCGTCGCTGCACGGCA

Downstream 100 bases:

>100_bases
TGCTCCGGCCCTGGGAAAACCGGGCGATCCCGTGCATTTCCGCGTTGCTTCAAACCCTCGACGGTCTGGAGTTCGATCCT
CAAACCCGGATCGAACTGAT

Product: transposase (IS4)

Products: NA

Alternate protein names: H repeat-associated protein in rhsC-phrB intergenic region; ORF-H2 [H]

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MGDLDWLATLGLKERWKKITSVACIDSSRVIGSKTETDRRYVISSLPADSERILHAVRMHWDIENGLHWCLDVTFGEDAC
PIRLRNAALDFSLLRRAAMNLFRADHSRAMGLPKKRKAAAWNPDYLANILHLREI

Sequences:

>Translated_135_residues
MGDLDWLATLGLKERWKKITSVACIDSSRVIGSKTETDRRYVISSLPADSERILHAVRMHWDIENGLHWCLDVTFGEDAC
PIRLRNAALDFSLLRRAAMNLFRADHSRAMGLPKKRKAAAWNPDYLANILHLREI
>Mature_134_residues
GDLDWLATLGLKERWKKITSVACIDSSRVIGSKTETDRRYVISSLPADSERILHAVRMHWDIENGLHWCLDVTFGEDACP
IRLRNAALDFSLLRRAAMNLFRADHSRAMGLPKKRKAAAWNPDYLANILHLREI

Specific function: Unknown

COG id: COG5433

COG function: function code L; Transposase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 11 family [H]

Homologues:

Organism=Escherichia coli, GI1789896, Length=120, Percent_Identity=39.1666666666667, Blast_Score=79, Evalue=1e-16,
Organism=Escherichia coli, GI1787733, Length=120, Percent_Identity=39.1666666666667, Blast_Score=79, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002559 [H]

Pfam domain/function: PF01609 Transposase_11 [H]

EC number: NA

Molecular weight: Translated: 15456; Mature: 15325

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDLDWLATLGLKERWKKITSVACIDSSRVIGSKTETDRRYVISSLPADSERILHAVRMH
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHH
WDIENGLHWCLDVTFGEDACPIRLRNAALDFSLLRRAAMNLFRADHSRAMGLPKKRKAAA
HCCCCCCEEEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
WNPDYLANILHLREI
CCHHHHHHHHHHHCC
>Mature Secondary Structure 
GDLDWLATLGLKERWKKITSVACIDSSRVIGSKTETDRRYVISSLPADSERILHAVRMH
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHH
WDIENGLHWCLDVTFGEDACPIRLRNAALDFSLLRRAAMNLFRADHSRAMGLPKKRKAAA
HCCCCCCEEEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
WNPDYLANILHLREI
CCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8387990; 8905232; 9278503 [H]