Click here to switch to the map view.

The map label for this gene is 121611588

Identifier: 121611588

GI number: 121611588

Start: 5168619

End: 5168942

Strand: Direct

Name: 121611588

Synonym: Veis_4680

Alternate gene names: NA

Gene position: 5168619-5168942 (Clockwise)

Preceding gene: 121611587

Following gene: 121611589

Centisome position: 92.85

GC content: 69.75

Gene sequence:

>324_bases
ATGTCTTGCCCAGCCAAGCTCATTGCCTGGGGCGAGCGCATCGGCGTGGGGTGCGCTGCGCTCGTGCGCTGGCAGATGGA
CAACCGCCCGCACCCGGAGCAAGGCTACCGCTGCTGCCTGGGCCTGCAGCGCCTGGCGCGCCAGTTCGGCCACGAACGCC
TGGAAGCCGCGTGCACGCGGGCGATGGCCATTCACTCGCCGATCTACCGCAGCGTCCATTCGATCCTGGCCAGCGGCACG
GACCGCCAGCCGCTGCCGGCCCAGCCGACCCAGACCTCGCTGCCGCTGCACGAGAACGTGCGTGGCCCTGATTACTACCA
CTGA

Upstream 100 bases:

>100_bases
CCACAACGCCCCGTCGCGGGGAGCGCGCTCAGTTGGGCGAGGCACTCTTGCCTGGCTCAGGCTTGCGATGGTTCAGCCAA
CTCCTCGCGTCCCCTGGGAA

Downstream 100 bases:

>100_bases
AGGAGAACCTGTGATCCCTGCCCACACCCTGGACCAACTCAAGACGCTGCGCCTGGACGGCATGGTGGCCGCACTGAGCG
ACCAAGCCATCAGCAGCGCG

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 106

Protein sequence:

>107_residues
MSCPAKLIAWGERIGVGCAALVRWQMDNRPHPEQGYRCCLGLQRLARQFGHERLEAACTRAMAIHSPIYRSVHSILASGT
DRQPLPAQPTQTSLPLHENVRGPDYYH

Sequences:

>Translated_107_residues
MSCPAKLIAWGERIGVGCAALVRWQMDNRPHPEQGYRCCLGLQRLARQFGHERLEAACTRAMAIHSPIYRSVHSILASGT
DRQPLPAQPTQTSLPLHENVRGPDYYH
>Mature_106_residues
SCPAKLIAWGERIGVGCAALVRWQMDNRPHPEQGYRCCLGLQRLARQFGHERLEAACTRAMAIHSPIYRSVHSILASGTD
RQPLPAQPTQTSLPLHENVRGPDYYH

Specific function: Required for the transposition of the insertion element (Potential) [H]

COG id: COG4584

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017895
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 12018; Mature: 11887

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
4.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSCPAKLIAWGERIGVGCAALVRWQMDNRPHPEQGYRCCLGLQRLARQFGHERLEAACTR
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMAIHSPIYRSVHSILASGTDRQPLPAQPTQTSLPLHENVRGPDYYH
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SCPAKLIAWGERIGVGCAALVRWQMDNRPHPEQGYRCCLGLQRLARQFGHERLEAACTR
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMAIHSPIYRSVHSILASGTDRQPLPAQPTQTSLPLHENVRGPDYYH
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7518087 [H]