| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is ygfF [C]
Identifier: 121611583
GI number: 121611583
Start: 5164325
End: 5165131
Strand: Direct
Name: ygfF [C]
Synonym: Veis_4675
Alternate gene names: 121611583
Gene position: 5164325-5165131 (Clockwise)
Preceding gene: 121611582
Following gene: 121611584
Centisome position: 92.77
GC content: 66.42
Gene sequence:
>807_bases ATGCAATCCAACGAACGTTCATTCGATCGCTCCCTCGAGGAGCGGGTCGCCATCGTCACCGGCGCAGGAGCACGCGCGGA AGGTATTGGCAATGGCCGCGCCGCGGCCATCCTCCTGGCGCGCGATGGCGCGCGCGTGCTATTGATCGATGCCGTCGAGG CATGGGCTGAAAGGACGCGCGAGATGATCGTCCAGGAAGGCGGTGAGGCGACCGTCTGTGTGTGTGACGTCAGTCGGGAT GAAGACTGTCGGGGCGCCGTGGCGCAGGCCGTGGATCAATGGGGCCGCGTCGACATCCTGGTGAACAACGTGGGCATCGG CGGGCCGCAAGGCACGGCCGTCGATCTCGACCTGGAGGCCTGGGACCAGGCGCTGCGTGTGAACGTCACGTCGATGATGC TGATGGCGCGCCATGCCATTCCACACATGCAGGCCATCGGCAAGGGGGCGATCGTCAACGTGGCCTCCGTGGCCGGTCTG ATCGGCGGCCACCCCAGTCTTCTGTATCCCACGTCCAAGGGAGCGGTCGTCAACATGACCCGGGCGATGGCTGCACACCA CGGCGCTCAGCGCATCCGCGTCAACTGCGTCGCGCCAGGCATGGTGCATACGCCCATGGTCTATGCCCGCGGCATGAGCG AGGAGACCCGGGAGGTTCGCCGCAAGCGTTCGTTCCTTCAGACCGAGGGCAGCGGCTGGGATGTGGGCCACGCGATCCGC TACCTGGCCAGCGACGAGTCCGGTTGGGTGACGGGTGCGATCGTTCCCGTGGATGCAGGCGCCACGGCCGGCCGTCATTC GTACTGA
Upstream 100 bases:
>100_bases CGCGCGGCCCATACCGAGCGTATTGGCAAGCGATGCAACGCCGCGATGCGCTTCGATGGCCAGCGCAGACCGACAGATGA TCGGTGACGCGACACTAAAT
Downstream 100 bases:
>100_bases AAACCAGGGAGACCGAATTGCAGCGCGGAAGTCTTTTCAGTCGAGCGGTCGGATGGACCGCCGCCCTTGTCCTTTGCAGC GGCGCGGTGCAGGCGCAGGT
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 268; Mature: 268
Protein sequence:
>268_residues MQSNERSFDRSLEERVAIVTGAGARAEGIGNGRAAAILLARDGARVLLIDAVEAWAERTREMIVQEGGEATVCVCDVSRD EDCRGAVAQAVDQWGRVDILVNNVGIGGPQGTAVDLDLEAWDQALRVNVTSMMLMARHAIPHMQAIGKGAIVNVASVAGL IGGHPSLLYPTSKGAVVNMTRAMAAHHGAQRIRVNCVAPGMVHTPMVYARGMSEETREVRRKRSFLQTEGSGWDVGHAIR YLASDESGWVTGAIVPVDAGATAGRHSY
Sequences:
>Translated_268_residues MQSNERSFDRSLEERVAIVTGAGARAEGIGNGRAAAILLARDGARVLLIDAVEAWAERTREMIVQEGGEATVCVCDVSRD EDCRGAVAQAVDQWGRVDILVNNVGIGGPQGTAVDLDLEAWDQALRVNVTSMMLMARHAIPHMQAIGKGAIVNVASVAGL IGGHPSLLYPTSKGAVVNMTRAMAAHHGAQRIRVNCVAPGMVHTPMVYARGMSEETREVRRKRSFLQTEGSGWDVGHAIR YLASDESGWVTGAIVPVDAGATAGRHSY >Mature_268_residues MQSNERSFDRSLEERVAIVTGAGARAEGIGNGRAAAILLARDGARVLLIDAVEAWAERTREMIVQEGGEATVCVCDVSRD EDCRGAVAQAVDQWGRVDILVNNVGIGGPQGTAVDLDLEAWDQALRVNVTSMMLMARHAIPHMQAIGKGAIVNVASVAGL IGGHPSLLYPTSKGAVVNMTRAMAAHHGAQRIRVNCVAPGMVHTPMVYARGMSEETREVRRKRSFLQTEGSGWDVGHAIR YLASDESGWVTGAIVPVDAGATAGRHSY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=249, Percent_Identity=32.1285140562249, Blast_Score=119, Evalue=3e-27, Organism=Homo sapiens, GI66933014, Length=227, Percent_Identity=34.8017621145374, Blast_Score=116, Evalue=2e-26, Organism=Homo sapiens, GI5031737, Length=254, Percent_Identity=31.1023622047244, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI40254992, Length=232, Percent_Identity=34.051724137931, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI59889578, Length=230, Percent_Identity=30, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI33667109, Length=196, Percent_Identity=34.6938775510204, Blast_Score=97, Evalue=1e-20, Organism=Homo sapiens, GI126723750, Length=255, Percent_Identity=30.5882352941176, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI31542939, Length=200, Percent_Identity=33.5, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI126723191, Length=197, Percent_Identity=32.48730964467, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI15277342, Length=265, Percent_Identity=29.811320754717, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI7705925, Length=250, Percent_Identity=32.4, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI10190704, Length=251, Percent_Identity=28.6852589641434, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI224922801, Length=183, Percent_Identity=33.3333333333333, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI19923817, Length=265, Percent_Identity=24.9056603773585, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI4504505, Length=197, Percent_Identity=30.4568527918782, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI4758504, Length=262, Percent_Identity=27.4809160305344, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI302344755, Length=109, Percent_Identity=33.0275229357798, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI2367175, Length=252, Percent_Identity=37.6984126984127, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI1787905, Length=249, Percent_Identity=31.7269076305221, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI87082100, Length=259, Percent_Identity=31.2741312741313, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI87082160, Length=258, Percent_Identity=31.0077519379845, Blast_Score=101, Evalue=4e-23, Organism=Escherichia coli, GI1789208, Length=260, Percent_Identity=30.7692307692308, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1787335, Length=250, Percent_Identity=28, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1789378, Length=246, Percent_Identity=29.2682926829268, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1790717, Length=250, Percent_Identity=29.2, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1788459, Length=249, Percent_Identity=27.710843373494, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787526, Length=256, Percent_Identity=25.390625, Blast_Score=67, Evalue=9e-13, Organism=Caenorhabditis elegans, GI71994604, Length=254, Percent_Identity=33.8582677165354, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17559104, Length=266, Percent_Identity=31.9548872180451, Blast_Score=114, Evalue=3e-26, Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=31.3725490196078, Blast_Score=110, Evalue=9e-25, Organism=Caenorhabditis elegans, GI17562904, Length=268, Percent_Identity=28.7313432835821, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17551412, Length=202, Percent_Identity=32.1782178217822, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17562908, Length=263, Percent_Identity=32.319391634981, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI17560332, Length=272, Percent_Identity=30.5147058823529, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=31.5589353612167, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=30.6818181818182, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI72000259, Length=262, Percent_Identity=31.2977099236641, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17562906, Length=265, Percent_Identity=30.188679245283, Blast_Score=98, Evalue=5e-21, Organism=Caenorhabditis elegans, GI193204405, Length=265, Percent_Identity=30.188679245283, Blast_Score=97, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17562910, Length=270, Percent_Identity=26.6666666666667, Blast_Score=97, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17538486, Length=212, Percent_Identity=33.9622641509434, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI25147288, Length=258, Percent_Identity=29.4573643410853, Blast_Score=94, Evalue=6e-20, Organism=Caenorhabditis elegans, GI17561402, Length=267, Percent_Identity=29.5880149812734, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI17560676, Length=255, Percent_Identity=27.0588235294118, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17560150, Length=263, Percent_Identity=28.8973384030418, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17560220, Length=273, Percent_Identity=30.03663003663, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17555706, Length=254, Percent_Identity=30.3149606299213, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17562990, Length=264, Percent_Identity=29.5454545454545, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17544670, Length=267, Percent_Identity=26.2172284644195, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17538182, Length=214, Percent_Identity=34.5794392523364, Blast_Score=85, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17564282, Length=202, Percent_Identity=28.2178217821782, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17563726, Length=264, Percent_Identity=25.3787878787879, Blast_Score=77, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17565030, Length=212, Percent_Identity=33.0188679245283, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17567345, Length=206, Percent_Identity=28.1553398058252, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17568967, Length=197, Percent_Identity=28.4263959390863, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193203117, Length=195, Percent_Identity=27.6923076923077, Blast_Score=64, Evalue=7e-11, Organism=Caenorhabditis elegans, GI115534694, Length=254, Percent_Identity=27.5590551181102, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=263, Percent_Identity=27.3764258555133, Blast_Score=79, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6322861, Length=197, Percent_Identity=29.4416243654822, Blast_Score=75, Evalue=1e-14, Organism=Drosophila melanogaster, GI23397609, Length=254, Percent_Identity=35.8267716535433, Blast_Score=137, Evalue=1e-32, Organism=Drosophila melanogaster, GI21357041, Length=255, Percent_Identity=34.1176470588235, Blast_Score=114, Evalue=7e-26, Organism=Drosophila melanogaster, GI28571526, Length=258, Percent_Identity=33.7209302325581, Blast_Score=110, Evalue=8e-25, Organism=Drosophila melanogaster, GI21355319, Length=258, Percent_Identity=29.4573643410853, Blast_Score=107, Evalue=6e-24, Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=33.0677290836653, Blast_Score=105, Evalue=4e-23, Organism=Drosophila melanogaster, GI24639444, Length=251, Percent_Identity=30.6772908366534, Blast_Score=99, Evalue=3e-21, Organism=Drosophila melanogaster, GI24644337, Length=229, Percent_Identity=32.3144104803493, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI17737361, Length=260, Percent_Identity=30.3846153846154, Blast_Score=85, Evalue=6e-17, Organism=Drosophila melanogaster, GI18859837, Length=194, Percent_Identity=29.3814432989691, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24641232, Length=238, Percent_Identity=29.4117647058824, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI21358495, Length=275, Percent_Identity=24.3636363636364, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 28506; Mature: 28506
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSNERSFDRSLEERVAIVTGAGARAEGIGNGRAAAILLARDGARVLLIDAVEAWAERTR CCCCCHHHHHHHHHCEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEHHHHHHHHHHH EMIVQEGGEATVCVCDVSRDEDCRGAVAQAVDQWGRVDILVNNVGIGGPQGTAVDLDLEA HHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEHHH WDQALRVNVTSMMLMARHAIPHMQAIGKGAIVNVASVAGLIGGHPSLLYPTSKGAVVNMT HHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEHHHHHHHHHCCCCCEEEECCCCCEEHHH RAMAAHHGAQRIRVNCVAPGMVHTPMVYARGMSEETREVRRKRSFLQTEGSGWDVGHAIR HHHHHHCCCCEEEEEEECCCCHHCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHH YLASDESGWVTGAIVPVDAGATAGRHSY HHCCCCCCEEEEEEEEECCCCCCCCCCC >Mature Secondary Structure MQSNERSFDRSLEERVAIVTGAGARAEGIGNGRAAAILLARDGARVLLIDAVEAWAERTR CCCCCHHHHHHHHHCEEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEHHHHHHHHHHH EMIVQEGGEATVCVCDVSRDEDCRGAVAQAVDQWGRVDILVNNVGIGGPQGTAVDLDLEA HHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEHHH WDQALRVNVTSMMLMARHAIPHMQAIGKGAIVNVASVAGLIGGHPSLLYPTSKGAVVNMT HHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEHHHHHHHHHCCCCCEEEECCCCCEEHHH RAMAAHHGAQRIRVNCVAPGMVHTPMVYARGMSEETREVRRKRSFLQTEGSGWDVGHAIR HHHHHHCCCCEEEEEEECCCCHHCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHH YLASDESGWVTGAIVPVDAGATAGRHSY HHCCCCCCEEEEEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10360571 [H]