| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is gsiB [H]
Identifier: 121611500
GI number: 121611500
Start: 5084993
End: 5086546
Strand: Direct
Name: gsiB [H]
Synonym: Veis_4591
Alternate gene names: 121611500
Gene position: 5084993-5086546 (Clockwise)
Preceding gene: 121611499
Following gene: 121611501
Centisome position: 91.35
GC content: 63.0
Gene sequence:
>1554_bases ATGAAGCAATCTTCTTTCTCCATGCGCTGGGCATCCGCACTGCTGGGCCTGGCCGCGCTCGCCGCCTCGGGCTCGGCACT GGCTGCCAAAGACGTGGTGCTGGCCATCGGCTACCAGCCGGAAACGCTGGACCCGTACAACACCAACACGACCATCACCA CGGCCGTGACCAAGACCTTCTACGAAGGCCTGTTCCAGTTCGACAAGGACCTGAAGGTGCAGAACGCGCTCGCCGAGGGC TACGAGGTCTCCAAGGACGGCCTGGTCTACACCATCGGGCTGCGCAGCGGCGTCAAGTTCCACGACGGCACCGACTTCAA CGCCGAAGCCGTGAAGGTCACGCTCGACCGCGTGCTGAACCAGGACAACAAGCTGCTGCGCCGCAACCAGTTCAACCGCG TCGGCAAGGTCGAGGCGCTGAATCCGAGCACCGTGCGCATCACGCTCAAGGAGCCCTTCGGCCCCTTCATCCACTCGCTG GCCCACGCCTCGGCCGCGATGATCTCGCCGGCCGCGCTCAAGAAGTGGGGCAACAAGGACATCGCCTTCCACCCCGTGGG CACAGGCCCCTTCGAGTTCGTCGAGTGGAAGCAGACCGACGCGGTCAAGGCCAAGAAGTTCGACGGCTACTGGAAGAAGG GCTTTCCGAAGATCGACAACCTGCAGTGGAAGCCGGTGCTCGAAAACAACACGCGCGCCGCGATGCTGCAGACCGGCGAA GCCGACTTTGCCTTCCCCATTCCCTACGAGCAGGCCGAGCTGCTGAAGAAGAGCGACAGGCTCGAAGTGATGGCATCGCC CTCGATCATCATGCGCTTCCTGGCCTTCAACATGCTGCAAAAGCCGTATGACAACCCGAAGGTGCGCGAAGCCATCGGCT ACGCCATCAACAAGGAAGCGCTGGCCAAGGTGGCCTTCGGCGGCTATGCGATTCCTGCGCAAGGCGTGCTGCCCCAGGGC GTGAAGTTCGCCGAAAAGATGGCGCCCATTCCCTACGACGTGAAGAAGGCCAAGGCCCTGCTGGCCGAAGCCGGCTACCC GAATGGCTTCGAGTCGGTGCTGTGGGGCGCCTACAACAACACGACCAGCCAGAAGACGATCCAGTTCGTGCAGCAGCAGC TCGCACAGGTGGGCATCAAGCTGCAGGTGCAGGCGCTCGAAGTGGGCCAGCGCACCGAGATGGTCGAAGCCTGGCCCGAT CCGAAGACGGCCAAGGTGCGCATGTACTACACGGGCTGGTCGTCGTCCACGGGTGAAGCCGACTGGGGTCTGCGCCCGCT GTTCGCCTCCGAATCGTGGGCGCCGAAGCTCAACAACATGTCTTTCTACAAGAGCGACGTGGTCGACAACGCACTCGCCA AGGCGCTGATCACGGTGGACGACAAGGAAAAGGCCGCGCTCTACAAGACCGCGCAGGAAGAGATCCGCAAGGACCTGCCG CGCGTGCCGCTGGTCACCGAGCAGAACCTGTCGGCGCACGCCAAGCGCCTGTCGGGTGTCTACGTCATGCCTGACGCGAA CATCAACTTCGACGCGATTGCCGTGTCGAACTGA
Upstream 100 bases:
>100_bases TTCGTGGCACGGCATGCCATCGGCGGCGCTTTCTGATTCCGAACCGTTTTTTCACCGCAGGCCCCCTGCATTTTTTCCAC GAACCGACTGGAGTTCTTCC
Downstream 100 bases:
>100_bases TCGCCGGTTCCTCGTTTTCTGATGGATTGTCCGGCCGGCGGCGGCACTGTGCCACCGCCCGCACGCGACATCTGCACCCC ATGCTGAATTACTTTCTCAA
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 517; Mature: 517
Protein sequence:
>517_residues MKQSSFSMRWASALLGLAALAASGSALAAKDVVLAIGYQPETLDPYNTNTTITTAVTKTFYEGLFQFDKDLKVQNALAEG YEVSKDGLVYTIGLRSGVKFHDGTDFNAEAVKVTLDRVLNQDNKLLRRNQFNRVGKVEALNPSTVRITLKEPFGPFIHSL AHASAAMISPAALKKWGNKDIAFHPVGTGPFEFVEWKQTDAVKAKKFDGYWKKGFPKIDNLQWKPVLENNTRAAMLQTGE ADFAFPIPYEQAELLKKSDRLEVMASPSIIMRFLAFNMLQKPYDNPKVREAIGYAINKEALAKVAFGGYAIPAQGVLPQG VKFAEKMAPIPYDVKKAKALLAEAGYPNGFESVLWGAYNNTTSQKTIQFVQQQLAQVGIKLQVQALEVGQRTEMVEAWPD PKTAKVRMYYTGWSSSTGEADWGLRPLFASESWAPKLNNMSFYKSDVVDNALAKALITVDDKEKAALYKTAQEEIRKDLP RVPLVTEQNLSAHAKRLSGVYVMPDANINFDAIAVSN
Sequences:
>Translated_517_residues MKQSSFSMRWASALLGLAALAASGSALAAKDVVLAIGYQPETLDPYNTNTTITTAVTKTFYEGLFQFDKDLKVQNALAEG YEVSKDGLVYTIGLRSGVKFHDGTDFNAEAVKVTLDRVLNQDNKLLRRNQFNRVGKVEALNPSTVRITLKEPFGPFIHSL AHASAAMISPAALKKWGNKDIAFHPVGTGPFEFVEWKQTDAVKAKKFDGYWKKGFPKIDNLQWKPVLENNTRAAMLQTGE ADFAFPIPYEQAELLKKSDRLEVMASPSIIMRFLAFNMLQKPYDNPKVREAIGYAINKEALAKVAFGGYAIPAQGVLPQG VKFAEKMAPIPYDVKKAKALLAEAGYPNGFESVLWGAYNNTTSQKTIQFVQQQLAQVGIKLQVQALEVGQRTEMVEAWPD PKTAKVRMYYTGWSSSTGEADWGLRPLFASESWAPKLNNMSFYKSDVVDNALAKALITVDDKEKAALYKTAQEEIRKDLP RVPLVTEQNLSAHAKRLSGVYVMPDANINFDAIAVSN >Mature_517_residues MKQSSFSMRWASALLGLAALAASGSALAAKDVVLAIGYQPETLDPYNTNTTITTAVTKTFYEGLFQFDKDLKVQNALAEG YEVSKDGLVYTIGLRSGVKFHDGTDFNAEAVKVTLDRVLNQDNKLLRRNQFNRVGKVEALNPSTVRITLKEPFGPFIHSL AHASAAMISPAALKKWGNKDIAFHPVGTGPFEFVEWKQTDAVKAKKFDGYWKKGFPKIDNLQWKPVLENNTRAAMLQTGE ADFAFPIPYEQAELLKKSDRLEVMASPSIIMRFLAFNMLQKPYDNPKVREAIGYAINKEALAKVAFGGYAIPAQGVLPQG VKFAEKMAPIPYDVKKAKALLAEAGYPNGFESVLWGAYNNTTSQKTIQFVQQQLAQVGIKLQVQALEVGQRTEMVEAWPD PKTAKVRMYYTGWSSSTGEADWGLRPLFASESWAPKLNNMSFYKSDVVDNALAKALITVDDKEKAALYKTAQEEIRKDLP RVPLVTEQNLSAHAKRLSGVYVMPDANINFDAIAVSN
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import [H]
COG id: COG0747
COG function: function code E; ABC-type dipeptide transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI1787052, Length=497, Percent_Identity=57.3440643863179, Blast_Score=597, Evalue=1e-172, Organism=Escherichia coli, GI1789966, Length=531, Percent_Identity=28.2485875706215, Blast_Score=188, Evalue=8e-49, Organism=Escherichia coli, GI1787551, Length=543, Percent_Identity=26.3351749539595, Blast_Score=141, Evalue=9e-35, Organism=Escherichia coli, GI1787762, Length=527, Percent_Identity=25.6166982922201, Blast_Score=134, Evalue=2e-32, Organism=Escherichia coli, GI1787495, Length=497, Percent_Identity=23.5412474849095, Blast_Score=119, Evalue=7e-28, Organism=Escherichia coli, GI1789887, Length=340, Percent_Identity=27.9411764705882, Blast_Score=112, Evalue=8e-26, Organism=Escherichia coli, GI1789397, Length=511, Percent_Identity=22.7005870841487, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI87081878, Length=509, Percent_Identity=20.6286836935167, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 57199; Mature: 57199
Theoretical pI: Translated: 9.61; Mature: 9.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQSSFSMRWASALLGLAALAASGSALAAKDVVLAIGYQPETLDPYNTNTTITTAVTKTF CCCCCHHHHHHHHHHHHHHHHCCCCCEEECCEEEEECCCCCCCCCCCCCCEEEHHHHHHH YEGLFQFDKDLKVQNALAEGYEVSKDGLVYTIGLRSGVKFHDGTDFNAEAVKVTLDRVLN HHHHHHHCCCHHHHHHHHCCCEECCCCEEEEEECCCCCEECCCCCCCCHHHHEEHHHHHC QDNKLLRRNQFNRVGKVEALNPSTVRITLKEPFGPFIHSLAHASAAMISPAALKKWGNKD CCHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHCCCCC IAFHPVGTGPFEFVEWKQTDAVKAKKFDGYWKKGFPKIDNLQWKPVLENNTRAAMLQTGE EEEEECCCCCHHHEECCCCCCCHHHHCCCHHHCCCCCCCCEEECEEECCCCCEEEEECCC ADFAFPIPYEQAELLKKSDRLEVMASPSIIMRFLAFNMLQKPYDNPKVREAIGYAINKEA CCEECCCCCHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHH LAKVAFGGYAIPAQGVLPQGVKFAEKMAPIPYDVKKAKALLAEAGYPNGFESVLWGAYNN HHHHHCCCEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCC TTSQKTIQFVQQQLAQVGIKLQVQALEVGQRTEMVEAWPDPKTAKVRMYYTGWSSSTGEA CCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHCCCCCCCEEEEEEEECCCCCCCCC DWGLRPLFASESWAPKLNNMSFYKSDVVDNALAKALITVDDKEKAALYKTAQEEIRKDLP CCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHCC RVPLVTEQNLSAHAKRLSGVYVMPDANINFDAIAVSN CCCCEECCCHHHHHHHHCCEEEECCCCCCEEEEEECC >Mature Secondary Structure MKQSSFSMRWASALLGLAALAASGSALAAKDVVLAIGYQPETLDPYNTNTTITTAVTKTF CCCCCHHHHHHHHHHHHHHHHCCCCCEEECCEEEEECCCCCCCCCCCCCCEEEHHHHHHH YEGLFQFDKDLKVQNALAEGYEVSKDGLVYTIGLRSGVKFHDGTDFNAEAVKVTLDRVLN HHHHHHHCCCHHHHHHHHCCCEECCCCEEEEEECCCCCEECCCCCCCCHHHHEEHHHHHC QDNKLLRRNQFNRVGKVEALNPSTVRITLKEPFGPFIHSLAHASAAMISPAALKKWGNKD CCHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHCCCCC IAFHPVGTGPFEFVEWKQTDAVKAKKFDGYWKKGFPKIDNLQWKPVLENNTRAAMLQTGE EEEEECCCCCHHHEECCCCCCCHHHHCCCHHHCCCCCCCCEEECEEECCCCCEEEEECCC ADFAFPIPYEQAELLKKSDRLEVMASPSIIMRFLAFNMLQKPYDNPKVREAIGYAINKEA CCEECCCCCHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHH LAKVAFGGYAIPAQGVLPQGVKFAEKMAPIPYDVKKAKALLAEAGYPNGFESVLWGAYNN HHHHHCCCEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHCCCCCC TTSQKTIQFVQQQLAQVGIKLQVQALEVGQRTEMVEAWPDPKTAKVRMYYTGWSSSTGEA CCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHCCCCCCCEEEEEEEECCCCCCCCC DWGLRPLFASESWAPKLNNMSFYKSDVVDNALAKALITVDDKEKAALYKTAQEEIRKDLP CCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHCC RVPLVTEQNLSAHAKRLSGVYVMPDANINFDAIAVSN CCCCEECCCHHHHHHHHCCEEEECCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA