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The map label for this gene is yjjV [H]

Identifier: 121611492

GI number: 121611492

Start: 5074884

End: 5075705

Strand: Direct

Name: yjjV [H]

Synonym: Veis_4583

Alternate gene names: 121611492

Gene position: 5074884-5075705 (Clockwise)

Preceding gene: 121611490

Following gene: 121611497

Centisome position: 91.16

GC content: 70.8

Gene sequence:

>822_bases
ATGAGCCTCTGGATCGACACCCACTGCCACCTCGACGCACCCGAGTTCGACCCCGACCGCGACGCGGTGCGGCGCCGGGC
CGCCGCCCAGGGCGTGGGGCACTGCGTGATTCCTGCCGTCGAGCGCGGCAACTGGGACAGCGTTCGTGCACTTGCGCACC
GGCATGGCGACAGCTATGCCTTGGGCATTCACCCGCTGTACACGGCGCGCGCCGATGATGGCGATCTGGCGCTTTTGGCC
TGGGCGCTGGAGCAGCATCAGGCCGATCCGCGCCTGGTGGCCGTTGGCGAGATCGGCCTCGATGGCTGGGTGCCGGGCCT
GGACCCGGCCCGGCAAGAACGCTTTTACCGCGCCCAGTTGCACCTGGCGCGCCGCTTCGGGCTGCCGGTGATCCTGCATG
TGCGCCGCTCGGCCGATCAACTGCTCCAGGGCCTGCGCCAATTGCCGGTGCCGGGCGGCATCGCGCATGCGTTCAATGGC
AGCCTGCAACAGGCGCGGGCCTTCATGGCCCTGGGTTTCAAGCTGGGCTTCGGGGGCGCTATGACCCATGAGCGGGCGCT
GCGGCTGCGCCGCCTGGCACGCGAACTGCCGGGCGACGCCCTGGTGCTGGAAACCGACGCGCCCGACATTCCCCCGCACT
GGCTCTACACCAGCGCCGCGCAGCGTGCGCAAGGCCAGCCCCAGGGGCGCAATGCGCCCGAAGAACTACCGCGCATCGCC
GGCGTGCTGGCGCAGTTGCGCGGCCAGCCGCTGCCGTTGCTGGCCGCAACCACCAGCGCCAATGCGCTGGCCGCGCTGCC
CCGGTTGCAGCATCTGTTGTGA

Upstream 100 bases:

>100_bases
GCGTCGGCATGCGCGATCGGTTGGTTCAGGAACGCCTGGCATCGGCTGCAACACACGGATGAAACCCGCCCCACCCGGCT
GCATGGAGCATCATCGCCCG

Downstream 100 bases:

>100_bases
ACCCCCCCGTGGCGCCAGCAGCGGCTTGGCAAAGCCGGCCGCGCAGCCCCTGGCATGGGTTGCGCCCGTTGCAGCGCTCA
TCGGCAATGGATGACACGGC

Product: TatD-like deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MSLWIDTHCHLDAPEFDPDRDAVRRRAAAQGVGHCVIPAVERGNWDSVRALAHRHGDSYALGIHPLYTARADDGDLALLA
WALEQHQADPRLVAVGEIGLDGWVPGLDPARQERFYRAQLHLARRFGLPVILHVRRSADQLLQGLRQLPVPGGIAHAFNG
SLQQARAFMALGFKLGFGGAMTHERALRLRRLARELPGDALVLETDAPDIPPHWLYTSAAQRAQGQPQGRNAPEELPRIA
GVLAQLRGQPLPLLAATTSANALAALPRLQHLL

Sequences:

>Translated_273_residues
MSLWIDTHCHLDAPEFDPDRDAVRRRAAAQGVGHCVIPAVERGNWDSVRALAHRHGDSYALGIHPLYTARADDGDLALLA
WALEQHQADPRLVAVGEIGLDGWVPGLDPARQERFYRAQLHLARRFGLPVILHVRRSADQLLQGLRQLPVPGGIAHAFNG
SLQQARAFMALGFKLGFGGAMTHERALRLRRLARELPGDALVLETDAPDIPPHWLYTSAAQRAQGQPQGRNAPEELPRIA
GVLAQLRGQPLPLLAATTSANALAALPRLQHLL
>Mature_272_residues
SLWIDTHCHLDAPEFDPDRDAVRRRAAAQGVGHCVIPAVERGNWDSVRALAHRHGDSYALGIHPLYTARADDGDLALLAW
ALEQHQADPRLVAVGEIGLDGWVPGLDPARQERFYRAQLHLARRFGLPVILHVRRSADQLLQGLRQLPVPGGIAHAFNGS
LQQARAFMALGFKLGFGGAMTHERALRLRRLARELPGDALVLETDAPDIPPHWLYTSAAQRAQGQPQGRNAPEELPRIAG
VLAQLRGQPLPLLAATTSANALAALPRLQHLL

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=282, Percent_Identity=28.7234042553192, Blast_Score=101, Evalue=9e-22,
Organism=Homo sapiens, GI226061853, Length=287, Percent_Identity=28.2229965156794, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI110349734, Length=282, Percent_Identity=28.3687943262411, Blast_Score=99, Evalue=6e-21,
Organism=Homo sapiens, GI226061614, Length=271, Percent_Identity=27.3062730627306, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI226061595, Length=228, Percent_Identity=28.0701754385965, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI225903424, Length=169, Percent_Identity=27.810650887574, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI87082439, Length=251, Percent_Identity=45.0199203187251, Blast_Score=181, Evalue=6e-47,
Organism=Escherichia coli, GI48994985, Length=261, Percent_Identity=31.4176245210728, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1787342, Length=277, Percent_Identity=30.6859205776173, Blast_Score=107, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17559024, Length=284, Percent_Identity=24.2957746478873, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI71980746, Length=271, Percent_Identity=25.830258302583, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24586117, Length=282, Percent_Identity=27.3049645390071, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI221330018, Length=282, Percent_Identity=27.3049645390071, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24648690, Length=284, Percent_Identity=26.7605633802817, Blast_Score=73, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29847; Mature: 29715

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLWIDTHCHLDAPEFDPDRDAVRRRAAAQGVGHCVIPAVERGNWDSVRALAHRHGDSYA
CCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCEE
LGIHPLYTARADDGDLALLAWALEQHQADPRLVAVGEIGLDGWVPGLDPARQERFYRAQL
EECCEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH
HLARRFGLPVILHVRRSADQLLQGLRQLPVPGGIAHAFNGSLQQARAFMALGFKLGFGGA
HHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCCCH
MTHERALRLRRLARELPGDALVLETDAPDIPPHWLYTSAAQRAQGQPQGRNAPEELPRIA
HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH
GVLAQLRGQPLPLLAATTSANALAALPRLQHLL
HHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
SLWIDTHCHLDAPEFDPDRDAVRRRAAAQGVGHCVIPAVERGNWDSVRALAHRHGDSYA
CEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCCEE
LGIHPLYTARADDGDLALLAWALEQHQADPRLVAVGEIGLDGWVPGLDPARQERFYRAQL
EECCEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHH
HLARRFGLPVILHVRRSADQLLQGLRQLPVPGGIAHAFNGSLQQARAFMALGFKLGFGGA
HHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCCCH
MTHERALRLRRLARELPGDALVLETDAPDIPPHWLYTSAAQRAQGQPQGRNAPEELPRIA
HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHH
GVLAQLRGQPLPLLAATTSANALAALPRLQHLL
HHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]