| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121611416
Identifier: 121611416
GI number: 121611416
Start: 4985971
End: 4986999
Strand: Direct
Name: 121611416
Synonym: Veis_4505
Alternate gene names: NA
Gene position: 4985971-4986999 (Clockwise)
Preceding gene: 121611413
Following gene: 121611417
Centisome position: 89.57
GC content: 62.29
Gene sequence:
>1029_bases ATGGCCCTTTTCACCACACTGCGCCGTCTTTGCCGGCAGGGCGCGCGCTTCGGTGCGCTGACTGCCATCGGCGCTGTCCA TTGGGGGAGCGCGCAGGCGCTGGATGTGCGCGTGGCGCGCCAATATGGTGTGGCCTATATCCCGCTGATGATCATGCAGG AGCAGAAACTGATCGAGAAGCACGCCGCCAGGTTGGGCGTGAAGGATGTCAACGTGGTCTGGCAGCAGTTCTCCGGCGGC GCGGTCATGAACGATGCCTTGCTGTCCGGCAACCTTGACTTCGCAGTGGTCGGTCCGCCGCCGTTTCTGACCATGTGGGC GCGCACGCAAGGCTCACGAAATCAGGTGCTGGGAATCGCGGCGCTGAACACGATGCCGATGTACCTGATGACGCGCAATC CGGCGATCAAGTCCGTCAAGGACTTTACGCCGAAGGACCGGATTGCGGTTTCCGGCGTCAAGGTGTCGACACAGGCTGTG GTGCTGCAAATGGCGGCCGCACAGGCCTGGGGCATCGGGGAGTTCGACCGCCTCGACAAGTTGACGGTGGCCATGCCGCT GTCCGACAGCATGGCGCTGATGCTGTCGGGCAAGAGCGAGATCACGGGGGATTTCACGGTGCCGCCCTTTTCCCATCGGG AGATGAGAGCCGGGATGAAGCCGGTCATCGATACCTTCTCGGTGCTGGGCGGCCCGAGTTCGACCAACGTGATCTACACC ACGAAAAATTACCACGACGCCCATCCGAAGATGGTCCAGGCTTTCTTGGCCGCGTTGCGCCAGGCGCAGCGTTCGATTGC CGAGAACAAGACAGCGGCGGCAGCCGTCTATCTCCGGCTTTCCGGTGACAAGGAGACGCCGGAGAACATCGTCGAGATCC TGAACGACCCGCAGATCAGCTTCGACAGCACCCCGCGCGGCATCATGGGTTTCGCGAAGTTCATGTACGAGACCGGGGCC ATCAGGGTGCAACCCGCATCGTGGAAGAGCCTGTTCATTGCCGCGCTCGACGGGGAGGCCGGAAATTGA
Upstream 100 bases:
>100_bases AAAATGCAAACGCTTGCATATAACGCTTGCATTTAACGCTTCCACGGCCCTGCGCGGTGCGTGGAAACATCTCGCCACCT TGCCTGAAGGGGAAAACAGC
Downstream 100 bases:
>100_bases AGCCCGATGCTGGCGCTGGCAGTTCCGCGCCTTTGCTGGCGGTGCAGCGGGTCACGCTGCGCTACGTCAGCGAAGGGCGC ACGGTGACTGCGACCGAGAA
Product: NLPA lipoprotein
Products: NA
Alternate protein names: NMT1/THI5 Like Domain Protein; NLPA Lipoprotein; Nlpa Lipoprotein; ABC-Type Transporter Periplasmic; Transporter Periplasmic Component; Periplasmic Protein
Number of amino acids: Translated: 342; Mature: 341
Protein sequence:
>342_residues MALFTTLRRLCRQGARFGALTAIGAVHWGSAQALDVRVARQYGVAYIPLMIMQEQKLIEKHAARLGVKDVNVVWQQFSGG AVMNDALLSGNLDFAVVGPPPFLTMWARTQGSRNQVLGIAALNTMPMYLMTRNPAIKSVKDFTPKDRIAVSGVKVSTQAV VLQMAAAQAWGIGEFDRLDKLTVAMPLSDSMALMLSGKSEITGDFTVPPFSHREMRAGMKPVIDTFSVLGGPSSTNVIYT TKNYHDAHPKMVQAFLAALRQAQRSIAENKTAAAAVYLRLSGDKETPENIVEILNDPQISFDSTPRGIMGFAKFMYETGA IRVQPASWKSLFIAALDGEAGN
Sequences:
>Translated_342_residues MALFTTLRRLCRQGARFGALTAIGAVHWGSAQALDVRVARQYGVAYIPLMIMQEQKLIEKHAARLGVKDVNVVWQQFSGG AVMNDALLSGNLDFAVVGPPPFLTMWARTQGSRNQVLGIAALNTMPMYLMTRNPAIKSVKDFTPKDRIAVSGVKVSTQAV VLQMAAAQAWGIGEFDRLDKLTVAMPLSDSMALMLSGKSEITGDFTVPPFSHREMRAGMKPVIDTFSVLGGPSSTNVIYT TKNYHDAHPKMVQAFLAALRQAQRSIAENKTAAAAVYLRLSGDKETPENIVEILNDPQISFDSTPRGIMGFAKFMYETGA IRVQPASWKSLFIAALDGEAGN >Mature_341_residues ALFTTLRRLCRQGARFGALTAIGAVHWGSAQALDVRVARQYGVAYIPLMIMQEQKLIEKHAARLGVKDVNVVWQQFSGGA VMNDALLSGNLDFAVVGPPPFLTMWARTQGSRNQVLGIAALNTMPMYLMTRNPAIKSVKDFTPKDRIAVSGVKVSTQAVV LQMAAAQAWGIGEFDRLDKLTVAMPLSDSMALMLSGKSEITGDFTVPPFSHREMRAGMKPVIDTFSVLGGPSSTNVIYTT KNYHDAHPKMVQAFLAALRQAQRSIAENKTAAAAVYLRLSGDKETPENIVEILNDPQISFDSTPRGIMGFAKFMYETGAI RVQPASWKSLFIAALDGEAGN
Specific function: Unknown
COG id: COG0715
COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37183; Mature: 37051
Theoretical pI: Translated: 10.08; Mature: 10.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALFTTLRRLCRQGARFGALTAIGAVHWGSAQALDVRVARQYGVAYIPLMIMQEQKLIEK CCHHHHHHHHHHCCCCCCHHHHHHHEECCCCCHHHHHHHHHCCCEEEHHHHHHHHHHHHH HAARLGVKDVNVVWQQFSGGAVMNDALLSGNLDFAVVGPPPFLTMWARTQGSRNQVLGIA HHHHCCCHHHHHHHHHCCCCEEECCCEEECCCCEEEECCCCCEEEEECCCCCCCCEEEEE ALNTMPMYLMTRNPAIKSVKDFTPKDRIAVSGVKVSTQAVVLQMAAAQAWGIGEFDRLDK ECCCCCEEEEECCCHHHHHHHCCCCCCEEEECEEEHHHHHHHHHHHHHHCCCCCHHHHCC LTVAMPLSDSMALMLSGKSEITGDFTVPPFSHREMRAGMKPVIDTFSVLGGPSSTNVIYT EEEEECCCCCEEEEEECCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCCCCEEEE TKNYHDAHPKMVQAFLAALRQAQRSIAENKTAAAAVYLRLSGDKETPENIVEILNDPQIS ECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHCCCCCC FDSTPRGIMGFAKFMYETGAIRVQPASWKSLFIAALDGEAGN CCCCCHHHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCCCC >Mature Secondary Structure ALFTTLRRLCRQGARFGALTAIGAVHWGSAQALDVRVARQYGVAYIPLMIMQEQKLIEK CHHHHHHHHHHCCCCCCHHHHHHHEECCCCCHHHHHHHHHCCCEEEHHHHHHHHHHHHH HAARLGVKDVNVVWQQFSGGAVMNDALLSGNLDFAVVGPPPFLTMWARTQGSRNQVLGIA HHHHCCCHHHHHHHHHCCCCEEECCCEEECCCCEEEECCCCCEEEEECCCCCCCCEEEEE ALNTMPMYLMTRNPAIKSVKDFTPKDRIAVSGVKVSTQAVVLQMAAAQAWGIGEFDRLDK ECCCCCEEEEECCCHHHHHHHCCCCCCEEEECEEEHHHHHHHHHHHHHHCCCCCHHHHCC LTVAMPLSDSMALMLSGKSEITGDFTVPPFSHREMRAGMKPVIDTFSVLGGPSSTNVIYT EEEEECCCCCEEEEEECCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCCCCEEEE TKNYHDAHPKMVQAFLAALRQAQRSIAENKTAAAAVYLRLSGDKETPENIVEILNDPQIS ECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHCCCCCC FDSTPRGIMGFAKFMYETGAIRVQPASWKSLFIAALDGEAGN CCCCCHHHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA