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The map label for this gene is dppC [H]

Identifier: 121611406

GI number: 121611406

Start: 4973549

End: 4974472

Strand: Direct

Name: dppC [H]

Synonym: Veis_4495

Alternate gene names: 121611406

Gene position: 4973549-4974472 (Clockwise)

Preceding gene: 121611405

Following gene: 121611407

Centisome position: 89.34

GC content: 68.4

Gene sequence:

>924_bases
ATGACCGCGACGGCAATGCCCACCTCGCCGGCCCCGACGGCCCCGACGACCCTCTGCGCTGGCGTCACCTGCGGCGCGTT
GCGCCAGTTGGGTCGCCAGCCGCGCGTGTGGGTGGGCGGCAGCATTCTTTTGGTGATGCTGTCGTTGGCCGTGTTCGCGC
CCTGGGTGGCGCCGCACGACCCACTGGAACAGGACCTGCTGCACATGCTGACGCCGCCGATGTGGGCGTCGGGGGGCGAC
GCCGCTTTCCCCCTCGGGACCGACGGCCTGGGTCGCTGTGTGCTGTCACGCGCCATCTACGGCGCGCGCGTGGCCTTGAC
CGTGGCCGTCGTCGCAGCGCTGGGCTCGATGCTGCTCGGCAGCACCCTGGCAATGCTGGGGGGCTACTTCGGCGGCGTGG
TCGATCGCGGCATCAGCTACGTGGTCGACCTTTGGATGTCGTTCCCACCCGTGGTGCTATCGCTGATCCTGCTGGTCGGC
CTCGGCACAGGCGTGGACAAGGTGATCCTGGCGGTGGTGCTGGTGGACTGGACGCGCTTTTGCCGCGTGATCCGGGCCGA
CGTGCTGGTCACCCGCCGCCGTGACTATGTGCTGGCGGCTCGGTTGCTGGGCTTCAGCCATCTGCGCACCATGCTGCGCG
AAGTGCTGCCGGCGGTAGTGCCGTTGATGATCACGCTGTTCTCCATCGAGATGGGCATCGCCATCGTGGTGGAGGCGACG
CTGTCCTTCATCGGCCTTTCGGTGCCGGCGCAGGTCACCACCTGGGGTCAGATGTTGGCGGACGCTCGCACCGACATGCA
AAGCGCCGCCTGGGTGATGCTGGTTCCGGTCGCCTGCATCATCCTCACGGTGCTGGGCTGCAACCTCTTCGGCGACGGTG
TCCGTGTCGCGCTGGACCCGCGGCTGCGCCTGCGCAGCGAATGA

Upstream 100 bases:

>100_bases
TGATCCAGGGCATTGCCCTGATCTTCTGCGTGCTGATGCTGGCGATCACGGTGATCGTCGACGTTCTGTATGCCGTGTTG
AACCCGCGACTGAGAACGCC

Downstream 100 bases:

>100_bases
CATGCTCGGCATCTCCCATCTCACATTGACGGCCCGCCGCAGTGGCGCGAAGGTCGACTTGCTGCGCGACATCTCGCTCA
CCCTGGAACGCGGCAAGGTC

Product: binding-protein-dependent transport systems inner membrane component

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MTATAMPTSPAPTAPTTLCAGVTCGALRQLGRQPRVWVGGSILLVMLSLAVFAPWVAPHDPLEQDLLHMLTPPMWASGGD
AAFPLGTDGLGRCVLSRAIYGARVALTVAVVAALGSMLLGSTLAMLGGYFGGVVDRGISYVVDLWMSFPPVVLSLILLVG
LGTGVDKVILAVVLVDWTRFCRVIRADVLVTRRRDYVLAARLLGFSHLRTMLREVLPAVVPLMITLFSIEMGIAIVVEAT
LSFIGLSVPAQVTTWGQMLADARTDMQSAAWVMLVPVACIILTVLGCNLFGDGVRVALDPRLRLRSE

Sequences:

>Translated_307_residues
MTATAMPTSPAPTAPTTLCAGVTCGALRQLGRQPRVWVGGSILLVMLSLAVFAPWVAPHDPLEQDLLHMLTPPMWASGGD
AAFPLGTDGLGRCVLSRAIYGARVALTVAVVAALGSMLLGSTLAMLGGYFGGVVDRGISYVVDLWMSFPPVVLSLILLVG
LGTGVDKVILAVVLVDWTRFCRVIRADVLVTRRRDYVLAARLLGFSHLRTMLREVLPAVVPLMITLFSIEMGIAIVVEAT
LSFIGLSVPAQVTTWGQMLADARTDMQSAAWVMLVPVACIILTVLGCNLFGDGVRVALDPRLRLRSE
>Mature_306_residues
TATAMPTSPAPTAPTTLCAGVTCGALRQLGRQPRVWVGGSILLVMLSLAVFAPWVAPHDPLEQDLLHMLTPPMWASGGDA
AFPLGTDGLGRCVLSRAIYGARVALTVAVVAALGSMLLGSTLAMLGGYFGGVVDRGISYVVDLWMSFPPVVLSLILLVGL
GTGVDKVILAVVLVDWTRFCRVIRADVLVTRRRDYVLAARLLGFSHLRTMLREVLPAVVPLMITLFSIEMGIAIVVEATL
SFIGLSVPAQVTTWGQMLADARTDMQSAAWVMLVPVACIILTVLGCNLFGDGVRVALDPRLRLRSE

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789964, Length=257, Percent_Identity=41.2451361867704, Blast_Score=169, Evalue=2e-43,
Organism=Escherichia coli, GI1787054, Length=279, Percent_Identity=33.6917562724014, Blast_Score=167, Evalue=5e-43,
Organism=Escherichia coli, GI1787760, Length=260, Percent_Identity=35.7692307692308, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1789889, Length=250, Percent_Identity=35.6, Blast_Score=144, Evalue=8e-36,
Organism=Escherichia coli, GI1787549, Length=250, Percent_Identity=33.6, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1787498, Length=277, Percent_Identity=30.3249097472924, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1788505, Length=217, Percent_Identity=28.5714285714286, Blast_Score=94, Evalue=9e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32677; Mature: 32545

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATAMPTSPAPTAPTTLCAGVTCGALRQLGRQPRVWVGGSILLVMLSLAVFAPWVAPHD
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHCCCCCCC
PLEQDLLHMLTPPMWASGGDAAFPLGTDGLGRCVLSRAIYGARVALTVAVVAALGSMLLG
CHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
STLAMLGGYFGGVVDRGISYVVDLWMSFPPVVLSLILLVGLGTGVDKVILAVVLVDWTRF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
CRVIRADVLVTRRRDYVLAARLLGFSHLRTMLREVLPAVVPLMITLFSIEMGIAIVVEAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSFIGLSVPAQVTTWGQMLADARTDMQSAAWVMLVPVACIILTVLGCNLFGDGVRVALDP
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
RLRLRSE
CHHCCCC
>Mature Secondary Structure 
TATAMPTSPAPTAPTTLCAGVTCGALRQLGRQPRVWVGGSILLVMLSLAVFAPWVAPHD
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHCCCCCCC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CHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800; 8550458 [H]