| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is hexR [C]
Identifier: 121611282
GI number: 121611282
Start: 4816320
End: 4817324
Strand: Direct
Name: hexR [C]
Synonym: Veis_4368
Alternate gene names: 121611282
Gene position: 4816320-4817324 (Clockwise)
Preceding gene: 121611280
Following gene: 121611284
Centisome position: 86.52
GC content: 65.07
Gene sequence:
>1005_bases GTGGCATCATTGGCCATCGGGCAGACACATGCGATTACGGCCCGGAGCATTTTGCAATCATCCACTGCGCGCGTTGCGAT GAATCCACCCCATACACCACCCGCATCCGTCGAGCAGTTCCTGCAATGCATCTCGCAGGAATACGAGGGCCTGAGCAAAC AGCTCAAGGCTATCTCGCGCCATGTCGAGGCCCACCGCGACCACCTGGGGCTGCAGGGCATACAGTCGGTGGCCGAGCAA TGCGGTGTGCAGCCGTCGGCGATGGTGCGCTTTGCCAAGCATTTCGGTTTTTCGGGTTTTTCGGAGATGCAGCGGCTGTT TCGCGAAGGGCTGGCCGAGCAGATCGCGCCGGGGCGCGCTTACAACCTGCGCTTGCGCGACGTGATCGAGGCTGGCTCGA CCAGCCTGCAGTCGCCGCAGATCGCCGATGAGTTCATCAAAGGCAGCATCGCCGGGATGCAGCAGTTGCGCCAGGAGTTG GACCAGCAGGCCTTCGCCCGCGCCGTGGAACTGCTGGCGGACACGCAGGCGATCTGGATCGCCGGCTCGCGCCGCTCTTT TCCGGTGGCGGTGTACCTGGACTACGCCTTGCAGCACACCGAAAAGCGCATCGGCCTGCTCAATGCGCTGGGCAGCATGC AGCAGGGGCAGATACGCTCGGTGCGCGCCGGCGATGTGCTGATCGCGATCTCGTTCAACCCCTACGCCGAAGAAACCCTG CAGGTGGCGCAGCAGGCCACGCAGCGCGGCGCGCGGGTGATCGCCATCACCGACAGCCGCATGGGCCCGCTGGCGCGCAC GGCCGAGGCGACGCTGATCGTGCAAGACAGCGCCACCTTCGGTTTTCGCGCCCTCACGGCCACCATGGGTCTGGCGCAAA GCCTGTTCGTTGCGCTGGCCTACCGGCTGGAAATTTCCTCCCAGCCCACCAGCACCGGGCGCCACAGAGGCGCGCTCAGG GCCGTCGCACAGTTGCCGCCGTTGCTCAAGGCGGCCAATTCATGA
Upstream 100 bases:
>100_bases CCTGCTTGTCGTCTTCGTCATTTCCGTTCGTGGATGAACGGCGTGCGCGGTTTTTCGGCAGGGGCATCGACCACCAGGGT CATGGGCCGCATGGGTCTTC
Downstream 100 bases:
>100_bases GCTGACGCGCGTGTGCAGCGCGCCGTTGCCGGTGCTGCCGGTGCTGCCGGTGCTGTTCGCTCCGGTTGTTGCTCGTTGCT CGTTTTTTCACATCACCAAC
Product: RpiR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator RpiR Family; Transcriptional Regulator; SIS Domain Protein; SIS Domain-Containing Protein; Transcriptional Regulator Protein; Transcription Regulator Protein; Sugar Isomerase; Transcriptional Regulator Rpir Family; SIS Family Regulator; Transcriptional Regulator RpiR Family Protein; N-Acetylmannosamine Kinase; N-Acylmannosamine Kinase; GlvR Family Transcriptional Regulator; RpiR-Family Transcriptional Regulator; Conserved Hypothethical Protein; RpiR Family Regulatory; Transcriptional Regulator Of Myo-Inositol Catabolism Operon; Transcriptional Regulator RpiR Family SIS Domain; Protein Hex Regulon Repressor; Transcription Regulator; RpiR Family Transcription Regulator Protein; Bifunctional Protein Glk; HTH/SIS Domain-Containing Protein; Sugar Isomerase Family Protein; Transcriptional Regulator IolR; Helix-Turn-Helix Domain RpiR Family
Number of amino acids: Translated: 334; Mature: 333
Protein sequence:
>334_residues MASLAIGQTHAITARSILQSSTARVAMNPPHTPPASVEQFLQCISQEYEGLSKQLKAISRHVEAHRDHLGLQGIQSVAEQ CGVQPSAMVRFAKHFGFSGFSEMQRLFREGLAEQIAPGRAYNLRLRDVIEAGSTSLQSPQIADEFIKGSIAGMQQLRQEL DQQAFARAVELLADTQAIWIAGSRRSFPVAVYLDYALQHTEKRIGLLNALGSMQQGQIRSVRAGDVLIAISFNPYAEETL QVAQQATQRGARVIAITDSRMGPLARTAEATLIVQDSATFGFRALTATMGLAQSLFVALAYRLEISSQPTSTGRHRGALR AVAQLPPLLKAANS
Sequences:
>Translated_334_residues MASLAIGQTHAITARSILQSSTARVAMNPPHTPPASVEQFLQCISQEYEGLSKQLKAISRHVEAHRDHLGLQGIQSVAEQ CGVQPSAMVRFAKHFGFSGFSEMQRLFREGLAEQIAPGRAYNLRLRDVIEAGSTSLQSPQIADEFIKGSIAGMQQLRQEL DQQAFARAVELLADTQAIWIAGSRRSFPVAVYLDYALQHTEKRIGLLNALGSMQQGQIRSVRAGDVLIAISFNPYAEETL QVAQQATQRGARVIAITDSRMGPLARTAEATLIVQDSATFGFRALTATMGLAQSLFVALAYRLEISSQPTSTGRHRGALR AVAQLPPLLKAANS >Mature_333_residues ASLAIGQTHAITARSILQSSTARVAMNPPHTPPASVEQFLQCISQEYEGLSKQLKAISRHVEAHRDHLGLQGIQSVAEQC GVQPSAMVRFAKHFGFSGFSEMQRLFREGLAEQIAPGRAYNLRLRDVIEAGSTSLQSPQIADEFIKGSIAGMQQLRQELD QQAFARAVELLADTQAIWIAGSRRSFPVAVYLDYALQHTEKRIGLLNALGSMQQGQIRSVRAGDVLIAISFNPYAEETLQ VAQQATQRGARVIAITDSRMGPLARTAEATLIVQDSATFGFRALTATMGLAQSLFVALAYRLEISSQPTSTGRHRGALRA VAQLPPLLKAANS
Specific function: Represses The Expression Of The Hex Regulon (Zwf, Eda, Glp And Gap) (By Similarity). [C]
COG id: COG1737
COG function: function code K; Transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36234; Mature: 36103
Theoretical pI: Translated: 9.91; Mature: 9.91
Prosite motif: PS51071 HTH_RPIR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASLAIGQTHAITARSILQSSTARVAMNPPHTPPASVEQFLQCISQEYEGLSKQLKAISR CCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH HVEAHRDHLGLQGIQSVAEQCGVQPSAMVRFAKHFGFSGFSEMQRLFREGLAEQIAPGRA HHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCE YNLRLRDVIEAGSTSLQSPQIADEFIKGSIAGMQQLRQELDQQAFARAVELLADTQAIWI EEEHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE AGSRRSFPVAVYLDYALQHTEKRIGLLNALGSMQQGQIRSVRAGDVLIAISFNPYAEETL ECCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEEECCCHHHHHH QVAQQATQRGARVIAITDSRMGPLARTAEATLIVQDSATFGFRALTATMGLAQSLFVALA HHHHHHHHCCCEEEEEECCCCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH YRLEISSQPTSTGRHRGALRAVAQLPPLLKAANS HHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHCCC >Mature Secondary Structure ASLAIGQTHAITARSILQSSTARVAMNPPHTPPASVEQFLQCISQEYEGLSKQLKAISR CCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH HVEAHRDHLGLQGIQSVAEQCGVQPSAMVRFAKHFGFSGFSEMQRLFREGLAEQIAPGRA HHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCE YNLRLRDVIEAGSTSLQSPQIADEFIKGSIAGMQQLRQELDQQAFARAVELLADTQAIWI EEEHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE AGSRRSFPVAVYLDYALQHTEKRIGLLNALGSMQQGQIRSVRAGDVLIAISFNPYAEETL ECCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEEECCCHHHHHH QVAQQATQRGARVIAITDSRMGPLARTAEATLIVQDSATFGFRALTATMGLAQSLFVALA HHHHHHHHCCCEEEEEECCCCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH YRLEISSQPTSTGRHRGALRAVAQLPPLLKAANS HHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA