| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
Click here to switch to the map view.
The map label for this gene is 121611060
Identifier: 121611060
GI number: 121611060
Start: 4556822
End: 4559167
Strand: Direct
Name: 121611060
Synonym: Veis_4144
Alternate gene names: NA
Gene position: 4556822-4559167 (Clockwise)
Preceding gene: 121611059
Following gene: 121611061
Centisome position: 81.86
GC content: 66.92
Gene sequence:
>2346_bases ATGGCCTCCACCATCAGGATCAACAAGCCCATCGTCAGAGCCGGCGAGACCGCCTGGGTCACCTTTACTTTCATCAATAA CGAGTACATGCGCATCGATGGGGATCAGATTCGTGACGTGACCGTCACCGGCGGCACGCTGAGTGCCGATTCCCTCGGAG TGCATACCATCGTTTCAAACAACATATCCTTCAAAGCCAGATTCACACCGACCCCGAACCTGGAGAAATCCGACTGCAAA ATCCGCTACAACGGCTCCGGCGATATCGCCGATGGAGAGCTCACCTTCGCCGTCGACACCCTGCGGCCCACCGTTGCCAG TGCCTCGATCGCCAAAAGCGACCTGCGCCTCGGGGAAAAAACCACCATCACCATCACCTTCAGCGAACGGGTGCTGCGCG ACACCTTCACGCTCGATGACCTGCAGGTGGACGCCGGCAAGGGCACTTTGAGCAACCTGCGCGTCGCCCCCTCCGACACC ACGGCCACCACCACCGCCGCCACCACCTGGCTGGTCGACCTGGAGGCCCCGGCCACCCGGCCCGCGACGGGCCTCGATGG CAACCAGATACGGATCAACCTCGACGACATCACCGATGTCCCGGGCAACGCAGGCGCAAGCCGGGGGGTGAGCCTCGCCC GCTACAACATCGACGCGCCGCCCACGGTCGCCATCACGGGCCAGCCCGCCACCCTCAAGATCGGCGAGTCCTTCACCGTC ACCTTCACCTTCGACGAGCGCGTCACCGGCTTTGGTGCCGAGGACATCCAGTACGACACCAGCAAAGGCACGCTGGGCGC TCTGACGGCCGTCGGCACCGACGGCAAGGTCTGGAGCGCCAGCTACACGCCCCGGTCCGGCATCGAGAGCGCCGAAAACA CCATCCGCGTGAATCTCAGCGGCGTCCGGGACGTGCGGGACAACGCCGGCGTGGGCACCGCCACCAGCGGCAACTTCAGC ATCGACACCGTGCGCCCCACGGTCAACGTGACGATCAGCGACGAGCGCCTCACCGCTGGCGAAACCGCCACCATCACCAT CACCTTCAGCGAGCGCGTCACCGGCTTCACGAAAGAGGACATCGGCCTGTCCCGGGCCAACGGCACGCTCGGCGACCTGA CCCCGGTCGGCACCGACGGCAAAACCTGGACCGCCACCTTCACCCCCACGGCCAACCTGGAGCGCCCCTACCCCTCCACC AACAGCCAGCTCACCCTGAACCTGGCCAATGTCAGGGATGCCGCAGGCAACACCGTCGCCAACAACACCTACTCGCTCCG GTACACCGTAGACACCATGGTCTTTGCGCTCAGCAGCGCCACGGTGAACCGCGACCAGTTGGTGCTGGGCTACGGCGCCG AAACGGATCTCGACGGGAACGCAGACCGCGCCCCGACCAACGAGTCCTTTACCGTGCTGGTCGATGGCACGCGCATCGAC GTCAGCCGGGTGACGGTGGATGCAGCGGCCCGGACGGTCACGCTGACCCTGGCCCGCGCCGTGGCTGCCGGCCAGCAGGT GAGCATCGCCTACCAGGACACCGACACCAGCGACGGCAAAGCGCTACAGGAGGTCAACGACGGCGACGACGCGGCCAGCT TCGCGGCCACGCCGGTGACCAACCTCACCCCGTCCCCGGTCGCACCCGCCACACCGGAGGCGTCTGGGGCGTCTGGGGCG TCTGGGGCGTCTGGAGGGTCTGGAGGGTCTGGAGGGTCTGGAGGGTCTGGAGGGTCTGGGGCGCTGGACTCCGACTACGA CAGTGTGCCCAACGCCCAGGAGGACCAGGCCCCCGGCCTGCTGCGCCCCGATGGCTCGGCCGGCCCGGATGGCGACGGCA ACGGCGACGGTATCCGGGACAGCCAGCAGGTCGCCGTCAGCTCGACCCGCGACCTGACCCTGGTGGCCGGCAGCCAGGAC GGCAAACTGATCCCCGGCAGCAATGCGCGCATCACCGAACTGGTGCGCAACGAAGCCCCCGCCAGCCTGCCCAAGGGCAT GGAAATGCCGATCGGCCTGACGCAATTCAGGGTCGGCCTGTCCGAAGGCCGCTACACCGAGAGCTTCAGCCTGTACGTAG ACCCGGCGCTCGGCGTCAACGGCTACTGGGTCAAGGACAGCGCCGGCACCTGGGTGAACCTGGCCAGCGAACCCTACGGC GGCAAAATGAGCACCGAAGGCGGGCGCACGCGGCTGGACTTTGAGATTCAGGACGGCGGCCAGTACGACGCCGACGGGCT GGCCGATGGCCACATCACCGCCCTTGGCGCCGCAGCGAAGATGCCGCTGTCCATCGTCGGGCAGGCGCCGCCCCAGGTCG AGTCGCAGGGGGGGTATTGGTTCTGA
Upstream 100 bases:
>100_bases TCCCTTCCGTCCAAAGGAGAGGCACCGTGACCGCCACCCTCCTGCCTACATTCAAGCGCGCATCAGCGTAATCCTCGCCC CACTGTGAAAGGACAGCACC
Downstream 100 bases:
>100_bases GTGTCGCGTCACCGGCCATCTGTCGGTCTGCGCTGGCCATCGAAGCGCAGCGCGGCGTTGCATCGCTGGCCAATACGCTC GGTATTTGTATTGATTGGCT
Product: hypothetical protein
Products: NA
Alternate protein names: Cadherin Domain-Containing Protein; Pyrrolo-Quinoline Quinone; Glycosyl Hydrolase BNR Repeat; Flagellar Hook-Length Control Protein FliK; S-Layer Domain Protein; BNR Repeat-Containing Glycosyl Hydrolase; RTX xin; Outer Membrane Adhesin Like Proteiin; Outer Membrane Adhesin Like Protein; Fibronectin Type III Domain Protein
Number of amino acids: Translated: 781; Mature: 780
Protein sequence:
>781_residues MASTIRINKPIVRAGETAWVTFTFINNEYMRIDGDQIRDVTVTGGTLSADSLGVHTIVSNNISFKARFTPTPNLEKSDCK IRYNGSGDIADGELTFAVDTLRPTVASASIAKSDLRLGEKTTITITFSERVLRDTFTLDDLQVDAGKGTLSNLRVAPSDT TATTTAATTWLVDLEAPATRPATGLDGNQIRINLDDITDVPGNAGASRGVSLARYNIDAPPTVAITGQPATLKIGESFTV TFTFDERVTGFGAEDIQYDTSKGTLGALTAVGTDGKVWSASYTPRSGIESAENTIRVNLSGVRDVRDNAGVGTATSGNFS IDTVRPTVNVTISDERLTAGETATITITFSERVTGFTKEDIGLSRANGTLGDLTPVGTDGKTWTATFTPTANLERPYPST NSQLTLNLANVRDAAGNTVANNTYSLRYTVDTMVFALSSATVNRDQLVLGYGAETDLDGNADRAPTNESFTVLVDGTRID VSRVTVDAAARTVTLTLARAVAAGQQVSIAYQDTDTSDGKALQEVNDGDDAASFAATPVTNLTPSPVAPATPEASGASGA SGASGGSGGSGGSGGSGGSGALDSDYDSVPNAQEDQAPGLLRPDGSAGPDGDGNGDGIRDSQQVAVSSTRDLTLVAGSQD GKLIPGSNARITELVRNEAPASLPKGMEMPIGLTQFRVGLSEGRYTESFSLYVDPALGVNGYWVKDSAGTWVNLASEPYG GKMSTEGGRTRLDFEIQDGGQYDADGLADGHITALGAAAKMPLSIVGQAPPQVESQGGYWF
Sequences:
>Translated_781_residues MASTIRINKPIVRAGETAWVTFTFINNEYMRIDGDQIRDVTVTGGTLSADSLGVHTIVSNNISFKARFTPTPNLEKSDCK IRYNGSGDIADGELTFAVDTLRPTVASASIAKSDLRLGEKTTITITFSERVLRDTFTLDDLQVDAGKGTLSNLRVAPSDT TATTTAATTWLVDLEAPATRPATGLDGNQIRINLDDITDVPGNAGASRGVSLARYNIDAPPTVAITGQPATLKIGESFTV TFTFDERVTGFGAEDIQYDTSKGTLGALTAVGTDGKVWSASYTPRSGIESAENTIRVNLSGVRDVRDNAGVGTATSGNFS IDTVRPTVNVTISDERLTAGETATITITFSERVTGFTKEDIGLSRANGTLGDLTPVGTDGKTWTATFTPTANLERPYPST NSQLTLNLANVRDAAGNTVANNTYSLRYTVDTMVFALSSATVNRDQLVLGYGAETDLDGNADRAPTNESFTVLVDGTRID VSRVTVDAAARTVTLTLARAVAAGQQVSIAYQDTDTSDGKALQEVNDGDDAASFAATPVTNLTPSPVAPATPEASGASGA SGASGGSGGSGGSGGSGGSGALDSDYDSVPNAQEDQAPGLLRPDGSAGPDGDGNGDGIRDSQQVAVSSTRDLTLVAGSQD GKLIPGSNARITELVRNEAPASLPKGMEMPIGLTQFRVGLSEGRYTESFSLYVDPALGVNGYWVKDSAGTWVNLASEPYG GKMSTEGGRTRLDFEIQDGGQYDADGLADGHITALGAAAKMPLSIVGQAPPQVESQGGYWF >Mature_780_residues ASTIRINKPIVRAGETAWVTFTFINNEYMRIDGDQIRDVTVTGGTLSADSLGVHTIVSNNISFKARFTPTPNLEKSDCKI RYNGSGDIADGELTFAVDTLRPTVASASIAKSDLRLGEKTTITITFSERVLRDTFTLDDLQVDAGKGTLSNLRVAPSDTT ATTTAATTWLVDLEAPATRPATGLDGNQIRINLDDITDVPGNAGASRGVSLARYNIDAPPTVAITGQPATLKIGESFTVT FTFDERVTGFGAEDIQYDTSKGTLGALTAVGTDGKVWSASYTPRSGIESAENTIRVNLSGVRDVRDNAGVGTATSGNFSI DTVRPTVNVTISDERLTAGETATITITFSERVTGFTKEDIGLSRANGTLGDLTPVGTDGKTWTATFTPTANLERPYPSTN SQLTLNLANVRDAAGNTVANNTYSLRYTVDTMVFALSSATVNRDQLVLGYGAETDLDGNADRAPTNESFTVLVDGTRIDV SRVTVDAAARTVTLTLARAVAAGQQVSIAYQDTDTSDGKALQEVNDGDDAASFAATPVTNLTPSPVAPATPEASGASGAS GASGGSGGSGGSGGSGGSGALDSDYDSVPNAQEDQAPGLLRPDGSAGPDGDGNGDGIRDSQQVAVSSTRDLTLVAGSQDG KLIPGSNARITELVRNEAPASLPKGMEMPIGLTQFRVGLSEGRYTESFSLYVDPALGVNGYWVKDSAGTWVNLASEPYGG KMSTEGGRTRLDFEIQDGGQYDADGLADGHITALGAAAKMPLSIVGQAPPQVESQGGYWF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 81188; Mature: 81057
Theoretical pI: Translated: 4.25; Mature: 4.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASTIRINKPIVRAGETAWVTFTFINNEYMRIDGDQIRDVTVTGGTLSADSLGVHTIVSN CCCEEEECCCEEECCCEEEEEEEEECCEEEEECCCCEEEEEEECCEECCCCCCEEEEEEC NISFKARFTPTPNLEKSDCKIRYNGSGDIADGELTFAVDTLRPTVASASIAKSDLRLGEK CEEEEEEECCCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCE TTITITFSERVLRDTFTLDDLQVDAGKGTLSNLRVAPSDTTATTTAATTWLVDLEAPATR EEEEEEECCHHHHHHCCCCCEEEECCCCCHHCCEECCCCCCCEEEEEEEEEEEECCCCCC PATGLDGNQIRINLDDITDVPGNAGASRGVSLARYNIDAPPTVAITGQPATLKIGESFTV CCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCEEEECCEEEE TFTFDERVTGFGAEDIQYDTSKGTLGALTAVGTDGKVWSASYTPRSGIESAENTIRVNLS EEEECCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCEEEEEEC GVRDVRDNAGVGTATSGNFSIDTVRPTVNVTISDERLTAGETATITITFSERVTGFTKED CCEECCCCCCCCCCCCCCEEEEEECCEEEEEECCCEEECCCEEEEEEEEHHCCCCCCHHH IGLSRANGTLGDLTPVGTDGKTWTATFTPTANLERPYPSTNSQLTLNLANVRDAAGNTVA CCEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEC NNTYSLRYTVDTMVFALSSATVNRDQLVLGYGAETDLDGNADRAPTNESFTVLVDGTRID CCEEEEEEEHHEEEEEHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCEEE VSRVTVDAAARTVTLTLARAVAAGQQVSIAYQDTDTSDGKALQEVNDGDDAASFAATPVT EEEEEEEHHHEEEEEEEHHHHHCCCEEEEEEECCCCCCCHHHHHCCCCCCCHHEECCCCC NLTPSPVAPATPEASGASGASGASGGSGGSGGSGGSGGSGALDSDYDSVPNAQEDQAPGL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE LRPDGSAGPDGDGNGDGIRDSQQVAVSSTRDLTLVAGSQDGKLIPGSNARITELVRNEAP ECCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCEECCCCCHHHHHHHCCCC ASLPKGMEMPIGLTQFRVGLSEGRYTESFSLYVDPALGVNGYWVKDSAGTWVNLASEPYG CCCCCCCCCCCCHHHEEEECCCCCEEEEEEEEECCCCCCCCEEEECCCCCEEEECCCCCC GKMSTEGGRTRLDFEIQDGGQYDADGLADGHITALGAAAKMPLSIVGQAPPQVESQGGYW CEECCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECHHHCCCEEEECCCCCCCCCCCCCC F C >Mature Secondary Structure ASTIRINKPIVRAGETAWVTFTFINNEYMRIDGDQIRDVTVTGGTLSADSLGVHTIVSN CCEEEECCCEEECCCEEEEEEEEECCEEEEECCCCEEEEEEECCEECCCCCCEEEEEEC NISFKARFTPTPNLEKSDCKIRYNGSGDIADGELTFAVDTLRPTVASASIAKSDLRLGEK CEEEEEEECCCCCCCCCCCEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCE TTITITFSERVLRDTFTLDDLQVDAGKGTLSNLRVAPSDTTATTTAATTWLVDLEAPATR EEEEEEECCHHHHHHCCCCCEEEECCCCCHHCCEECCCCCCCEEEEEEEEEEEECCCCCC PATGLDGNQIRINLDDITDVPGNAGASRGVSLARYNIDAPPTVAITGQPATLKIGESFTV CCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCEEEECCEEEE TFTFDERVTGFGAEDIQYDTSKGTLGALTAVGTDGKVWSASYTPRSGIESAENTIRVNLS EEEECCCCCCCCCCCEEEECCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCEEEEEEC GVRDVRDNAGVGTATSGNFSIDTVRPTVNVTISDERLTAGETATITITFSERVTGFTKED CCEECCCCCCCCCCCCCCEEEEEECCEEEEEECCCEEECCCEEEEEEEEHHCCCCCCHHH IGLSRANGTLGDLTPVGTDGKTWTATFTPTANLERPYPSTNSQLTLNLANVRDAAGNTVA CCEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEC NNTYSLRYTVDTMVFALSSATVNRDQLVLGYGAETDLDGNADRAPTNESFTVLVDGTRID CCEEEEEEEHHEEEEEHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCEEE VSRVTVDAAARTVTLTLARAVAAGQQVSIAYQDTDTSDGKALQEVNDGDDAASFAATPVT EEEEEEEHHHEEEEEEEHHHHHCCCEEEEEEECCCCCCCHHHHHCCCCCCCHHEECCCCC NLTPSPVAPATPEASGASGASGASGGSGGSGGSGGSGGSGALDSDYDSVPNAQEDQAPGL CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE LRPDGSAGPDGDGNGDGIRDSQQVAVSSTRDLTLVAGSQDGKLIPGSNARITELVRNEAP ECCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCEECCCCCHHHHHHHCCCC ASLPKGMEMPIGLTQFRVGLSEGRYTESFSLYVDPALGVNGYWVKDSAGTWVNLASEPYG CCCCCCCCCCCCHHHEEEECCCCCEEEEEEEEECCCCCCCCEEEECCCCCEEEECCCCCC GKMSTEGGRTRLDFEIQDGGQYDADGLADGHITALGAAAKMPLSIVGQAPPQVESQGGYW CEECCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECHHHCCCEEEECCCCCCCCCCCCCC F C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA