| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is braF [H]
Identifier: 121611013
GI number: 121611013
Start: 4494206
End: 4495084
Strand: Direct
Name: braF [H]
Synonym: Veis_4097
Alternate gene names: 121611013
Gene position: 4494206-4495084 (Clockwise)
Preceding gene: 121611012
Following gene: 121611014
Centisome position: 80.73
GC content: 68.6
Gene sequence:
>879_bases ATGACCACGCCGGCAGCCCCCCAGGACGACAGCGGCGTGCTGCTCAGCGTGCGCAACCTCAGCCTGCGCTTTGGCGGTGT GCTGGCGGTCAACGACGTGAGCTTCGATGTGCGCAGCGGCGAGGTGTTCACGCTCATCGGCCCCAACGGCGCGGGCAAGA CCACGCTGTTCAACCTCATCAGCCGCATCTACCGGCCGAGCACCGGCAGCATCGCCTATGCGGGGCCGGACGGCGCAATG CTGCAACTGACGCGCCAGCAGCCGCACATGGTGGCCGGCCTGGGCATTGCGCGCACCTTCCAGAACATCGAACTGTTCGA GCATGCCAGCGTGCTGCACAACCTGCTGATCGGCCGCCACCGGTGCCGCGAGACCGGGCTGTGGGCCGATTTGCTGTTCA CGCGCCGCGTGCGCGCGGCCGAGATGCGCGCGCGCGAGAAGGTCGAGCAGGTCATCGACTTCCTCGATCTGCAGCATTGC CGCGACCAACTGGTGGCCGGCCTGCCCTATGGCGTGCGCAAGGTGGTGGAACTGGCGCGCGCGCTGTGCACCGAGCCGCG CCTGCTGCTGCTCGACGAGCCTTCGTCGGGCCTGAATGTGGAGGAGACCGACGACATGGCCTTCTGGATCCAGGACATAC AGCAGGCGCTGGGCATCACCGTGCTGATGGTCGAGCATGACATGGCGCTGGTCTCCAGGGTGTCCGACCGGGTGCTGGCG ATGAACCATGGCCAGGTGCTGGCCATGGGCAGCCCACGCGAAGTGCAGTCGCACCCCGGCGTCATCGAGGCCTACCTGGG CCGCGCCGACACGGCCAGCGACACTTCAGGCCCGCTGCGCCGCCCGCCGGCCAGCCCCGGCGCAAGGACGAGCGCATGA
Upstream 100 bases:
>100_bases GCCGCTGGCTCAAGCTGCGTACCTGGCTGCAGATGTTTCCGTTCTACCGCCGGGGCATGTTCAAGCGGCAGCGGTCGTTC CAGAAATCCGAGCGTTTGCG
Downstream 100 bases:
>100_bases GCGCCGCCCGGCCGCCCGAAGGCCCGCATTCCGCAGCCGAAGGCGCAGGTACTCCCGTGCGCCCGGATGCCCGCACCGCC GACGACCAGGCCCCGATGCT
Product: ABC transporter-like protein
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 292; Mature: 291
Protein sequence:
>292_residues MTTPAAPQDDSGVLLSVRNLSLRFGGVLAVNDVSFDVRSGEVFTLIGPNGAGKTTLFNLISRIYRPSTGSIAYAGPDGAM LQLTRQQPHMVAGLGIARTFQNIELFEHASVLHNLLIGRHRCRETGLWADLLFTRRVRAAEMRAREKVEQVIDFLDLQHC RDQLVAGLPYGVRKVVELARALCTEPRLLLLDEPSSGLNVEETDDMAFWIQDIQQALGITVLMVEHDMALVSRVSDRVLA MNHGQVLAMGSPREVQSHPGVIEAYLGRADTASDTSGPLRRPPASPGARTSA
Sequences:
>Translated_292_residues MTTPAAPQDDSGVLLSVRNLSLRFGGVLAVNDVSFDVRSGEVFTLIGPNGAGKTTLFNLISRIYRPSTGSIAYAGPDGAM LQLTRQQPHMVAGLGIARTFQNIELFEHASVLHNLLIGRHRCRETGLWADLLFTRRVRAAEMRAREKVEQVIDFLDLQHC RDQLVAGLPYGVRKVVELARALCTEPRLLLLDEPSSGLNVEETDDMAFWIQDIQQALGITVLMVEHDMALVSRVSDRVLA MNHGQVLAMGSPREVQSHPGVIEAYLGRADTASDTSGPLRRPPASPGARTSA >Mature_291_residues TTPAAPQDDSGVLLSVRNLSLRFGGVLAVNDVSFDVRSGEVFTLIGPNGAGKTTLFNLISRIYRPSTGSIAYAGPDGAML QLTRQQPHMVAGLGIARTFQNIELFEHASVLHNLLIGRHRCRETGLWADLLFTRRVRAAEMRAREKVEQVIDFLDLQHCR DQLVAGLPYGVRKVVELARALCTEPRLLLLDEPSSGLNVEETDDMAFWIQDIQQALGITVLMVEHDMALVSRVSDRVLAM NHGQVLAMGSPREVQSHPGVIEAYLGRADTASDTSGPLRRPPASPGARTSA
Specific function: Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids [H]
COG id: COG0411
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI47078218, Length=225, Percent_Identity=27.1111111111111, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI45446740, Length=225, Percent_Identity=27.1111111111111, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI11967969, Length=234, Percent_Identity=26.9230769230769, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI31657092, Length=226, Percent_Identity=26.1061946902655, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI27436953, Length=259, Percent_Identity=22.007722007722, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI27881501, Length=244, Percent_Identity=23.3606557377049, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI30795238, Length=244, Percent_Identity=23.3606557377049, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI21536378, Length=242, Percent_Identity=28.5123966942149, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI116734710, Length=227, Percent_Identity=23.3480176211454, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI27477115, Length=200, Percent_Identity=25.5, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI105990541, Length=242, Percent_Identity=23.1404958677686, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI73747915, Length=227, Percent_Identity=26.8722466960352, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI153792144, Length=252, Percent_Identity=23.4126984126984, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI1789864, Length=256, Percent_Identity=40.234375, Blast_Score=199, Evalue=1e-52, Organism=Escherichia coli, GI1788761, Length=246, Percent_Identity=29.6747967479675, Blast_Score=128, Evalue=3e-31, Organism=Escherichia coli, GI87081791, Length=246, Percent_Identity=32.520325203252, Blast_Score=126, Evalue=1e-30, Organism=Escherichia coli, GI87081709, Length=259, Percent_Identity=31.2741312741313, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI1787712, Length=241, Percent_Identity=34.0248962655602, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1789593, Length=253, Percent_Identity=31.6205533596838, Blast_Score=110, Evalue=9e-26, Organism=Escherichia coli, GI1790525, Length=259, Percent_Identity=29.3436293436293, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1786398, Length=233, Percent_Identity=28.3261802575107, Blast_Score=101, Evalue=7e-23, Organism=Escherichia coli, GI1789991, Length=236, Percent_Identity=30.5084745762712, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1790467, Length=246, Percent_Identity=26.4227642276423, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI48994943, Length=290, Percent_Identity=27.5862068965517, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1788897, Length=227, Percent_Identity=31.7180616740088, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1789032, Length=248, Percent_Identity=28.6290322580645, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1786345, Length=247, Percent_Identity=30.3643724696356, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI1787029, Length=253, Percent_Identity=26.8774703557312, Blast_Score=98, Evalue=7e-22, Organism=Escherichia coli, GI1788225, Length=247, Percent_Identity=28.3400809716599, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1789672, Length=253, Percent_Identity=26.0869565217391, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1790190, Length=257, Percent_Identity=26.8482490272374, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1788210, Length=256, Percent_Identity=27.34375, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1788450, Length=260, Percent_Identity=26.5384615384615, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1787370, Length=236, Percent_Identity=29.2372881355932, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI1787089, Length=245, Percent_Identity=26.9387755102041, Blast_Score=94, Evalue=9e-21, Organism=Escherichia coli, GI48995001, Length=262, Percent_Identity=28.2442748091603, Blast_Score=94, Evalue=9e-21, Organism=Escherichia coli, GI1788165, Length=252, Percent_Identity=29.3650793650794, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1790739, Length=249, Percent_Identity=29.718875502008, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI87082268, Length=260, Percent_Identity=28.0769230769231, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI87082267, Length=235, Percent_Identity=28.0851063829787, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1787792, Length=244, Percent_Identity=26.6393442622951, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI87081782, Length=248, Percent_Identity=27.4193548387097, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI48994883, Length=269, Percent_Identity=26.7657992565056, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1788472, Length=247, Percent_Identity=24.2914979757085, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1786803, Length=241, Percent_Identity=26.5560165975104, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1786872, Length=243, Percent_Identity=27.9835390946502, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1786563, Length=265, Percent_Identity=29.0566037735849, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI1786253, Length=238, Percent_Identity=30.2521008403361, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1789873, Length=223, Percent_Identity=30.4932735426009, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787759, Length=290, Percent_Identity=28.9655172413793, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI87081834, Length=244, Percent_Identity=29.0983606557377, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1788053, Length=217, Percent_Identity=33.1797235023041, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1787500, Length=235, Percent_Identity=27.2340425531915, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1787758, Length=261, Percent_Identity=24.904214559387, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1786319, Length=223, Percent_Identity=26.0089686098655, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1789891, Length=219, Percent_Identity=28.7671232876712, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1790544, Length=247, Percent_Identity=28.3400809716599, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1788506, Length=246, Percent_Identity=28.0487804878049, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI145693107, Length=277, Percent_Identity=24.187725631769, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1788644, Length=253, Percent_Identity=27.2727272727273, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI1789586, Length=274, Percent_Identity=26.6423357664234, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1787548, Length=260, Percent_Identity=23.8461538461538, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787182, Length=275, Percent_Identity=22.5454545454545, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1787164, Length=238, Percent_Identity=25.6302521008403, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1786703, Length=215, Percent_Identity=27.4418604651163, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1787105, Length=221, Percent_Identity=24.8868778280543, Blast_Score=64, Evalue=1e-11, Organism=Caenorhabditis elegans, GI115533608, Length=297, Percent_Identity=27.9461279461279, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI115534520, Length=255, Percent_Identity=23.921568627451, Blast_Score=79, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17565938, Length=264, Percent_Identity=29.5454545454545, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17543740, Length=239, Percent_Identity=29.2887029288703, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI212646699, Length=238, Percent_Identity=25.2100840336134, Blast_Score=74, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17551702, Length=239, Percent_Identity=27.1966527196653, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17551700, Length=239, Percent_Identity=27.1966527196653, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71992285, Length=260, Percent_Identity=23.8461538461538, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17565586, Length=233, Percent_Identity=25.7510729613734, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17533971, Length=239, Percent_Identity=25.9414225941423, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193202349, Length=272, Percent_Identity=23.8970588235294, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17510237, Length=242, Percent_Identity=22.3140495867769, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71983523, Length=247, Percent_Identity=24.2914979757085, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI71983510, Length=247, Percent_Identity=24.2914979757085, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI71983516, Length=247, Percent_Identity=24.2914979757085, Blast_Score=65, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6324498, Length=249, Percent_Identity=27.3092369477912, Blast_Score=72, Evalue=1e-13, Organism=Drosophila melanogaster, GI24666092, Length=238, Percent_Identity=29.8319327731092, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI28573571, Length=254, Percent_Identity=25.1968503937008, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24643674, Length=237, Percent_Identity=27.0042194092827, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI28573573, Length=248, Percent_Identity=25.4032258064516, Blast_Score=78, Evalue=7e-15, Organism=Drosophila melanogaster, GI221512771, Length=234, Percent_Identity=27.7777777777778, Blast_Score=78, Evalue=9e-15, Organism=Drosophila melanogaster, GI28571209, Length=227, Percent_Identity=22.0264317180617, Blast_Score=72, Evalue=6e-13, Organism=Drosophila melanogaster, GI24641565, Length=240, Percent_Identity=25, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI24581387, Length=256, Percent_Identity=26.171875, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI17136592, Length=223, Percent_Identity=27.3542600896861, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24581383, Length=255, Percent_Identity=26.2745098039216, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI24581385, Length=255, Percent_Identity=26.2745098039216, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 31871; Mature: 31740
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTPAAPQDDSGVLLSVRNLSLRFGGVLAVNDVSFDVRSGEVFTLIGPNGAGKTTLFNLI CCCCCCCCCCCCEEEEEEECEEEECCEEEEECCEEEECCCCEEEEECCCCCCHHHHHHHH SRIYRPSTGSIAYAGPDGAMLQLTRQQPHMVAGLGIARTFQNIELFEHASVLHNLLIGRH HHHHCCCCCCEEEECCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RCRETGLWADLLFTRRVRAAEMRAREKVEQVIDFLDLQHCRDQLVAGLPYGVRKVVELAR HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH ALCTEPRLLLLDEPSSGLNVEETDDMAFWIQDIQQALGITVLMVEHDMALVSRVSDRVLA HHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCEEEEEEEHHHHHHHHHHHHEEE MNHGQVLAMGSPREVQSHPGVIEAYLGRADTASDTSGPLRRPPASPGARTSA ECCCEEEEECCCHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TTPAAPQDDSGVLLSVRNLSLRFGGVLAVNDVSFDVRSGEVFTLIGPNGAGKTTLFNLI CCCCCCCCCCCEEEEEEECEEEECCEEEEECCEEEECCCCEEEEECCCCCCHHHHHHHH SRIYRPSTGSIAYAGPDGAMLQLTRQQPHMVAGLGIARTFQNIELFEHASVLHNLLIGRH HHHHCCCCCCEEEECCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RCRETGLWADLLFTRRVRAAEMRAREKVEQVIDFLDLQHCRDQLVAGLPYGVRKVVELAR HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH ALCTEPRLLLLDEPSSGLNVEETDDMAFWIQDIQQALGITVLMVEHDMALVSRVSDRVLA HHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCEEEEEEEHHHHHHHHHHHHEEE MNHGQVLAMGSPREVQSHPGVIEAYLGRADTASDTSGPLRRPPASPGARTSA ECCCEEEEECCCHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 2120183; 10984043 [H]