| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121610904
Identifier: 121610904
GI number: 121610904
Start: 4374345
End: 4375364
Strand: Direct
Name: 121610904
Synonym: Veis_3986
Alternate gene names: NA
Gene position: 4374345-4375364 (Clockwise)
Preceding gene: 121610903
Following gene: 121610905
Centisome position: 78.58
GC content: 69.9
Gene sequence:
>1020_bases ATGCCGCTTCTTTCGCTTCCCCCGCTTGCACGCCCCCTGCCCCCGCTCCCCCTGCGCCTGTGCGCTGCCGCCTGGCTGGC GCTGGCGCTGGCGGCCCTGCCCGCCGGCAGCCCGCTGGCGCAGCAGGGCTATCCGGGCAGGCCGATCCGGCTGGTCGTCC CGTTCCCGCCGGGCAGCGGTTCCGACATCACGGCGCGCACCGTGGCGCAGAAAATGGCCGAGCAGAACCACTGGAGCGTG CTGGTGGACAACCGCCCCGGCGCCGGCGGCAACCTGGGCGTGGACAGCGTCGCCAAGTCGGCGCCCGATGGCCATACGCT GGTGCTGGGGCAGACCAACAACCTGGCCATCAACCCCACGCTCTACCCCCAACTGCCTTATGACCCGCTCAAGGACCTGG TGCCGGTGGCGCTGCTGTCGTCCTCGCCCATCGTGCTGGTCACGTCCCTGAAGTCGGCCTTCAAGACCTATGCCGATGTG GTCACTGCGGCCAGGATGCAGCCCGATACGGTCACGCTGGGGGTTGCCGGCAGCACCGCGCAACTGGCGGGCAAACTGGC CGAGAACGCTGCCGGCATCCGGCTGCGCCACATCCCCTACAAAGGCGCAGCCCAGGGCGTGACGGACCTGGTGGGCGGGC AGATCGATTTGTACATATCCTCCGTGCCCACGCTGCTGGGCCAGGTGCGCAACGGCAGGCTGCGCGCGCTGGCGATCACC TCGGCCCGGCGCTCGGGCCAGTTGCCGGACACGCCCACGCTGGCCGAGTCCGGCTACCCGGGCTTCGATGTCACGACCTG GTACGGCATCCTCGCTCCGGCGGGCACACCCGCCGCCATCGTGCAGCAGTTGAACCAGGCCATCAATCAGGCGCTGGCAC AGCCCGATGTGGCCGAAAAACTGCGCTCCGAAGGCGGCGAGGTGCTCGGCGGCAGCGCCGAGCGCTTTGCCGAACTGCTG CGCACCGAGGTGCCGCGCTGGGGCAAGATCGTCAAGGACTCGGGGGCCAGCGTCAATTGA
Upstream 100 bases:
>100_bases AACGCCGCGATGCGCTTCGATGGCCAGCGCAGACCGACAGATGATCGGTGACGCGACACTAAGGCGCACCGCGTGATGTT TGCCACAGAGACCAACGACC
Downstream 100 bases:
>100_bases TATCGATGGATTCCTGCGCGCTAGCCGACGGCTTTCGCTACAGTCGCGCCACGCTTGCAGCGCCTGCGGCACTGCGTGAT GTGCGATGCCTTCGGCGCAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 339; Mature: 338
Protein sequence:
>339_residues MPLLSLPPLARPLPPLPLRLCAAAWLALALAALPAGSPLAQQGYPGRPIRLVVPFPPGSGSDITARTVAQKMAEQNHWSV LVDNRPGAGGNLGVDSVAKSAPDGHTLVLGQTNNLAINPTLYPQLPYDPLKDLVPVALLSSSPIVLVTSLKSAFKTYADV VTAARMQPDTVTLGVAGSTAQLAGKLAENAAGIRLRHIPYKGAAQGVTDLVGGQIDLYISSVPTLLGQVRNGRLRALAIT SARRSGQLPDTPTLAESGYPGFDVTTWYGILAPAGTPAAIVQQLNQAINQALAQPDVAEKLRSEGGEVLGGSAERFAELL RTEVPRWGKIVKDSGASVN
Sequences:
>Translated_339_residues MPLLSLPPLARPLPPLPLRLCAAAWLALALAALPAGSPLAQQGYPGRPIRLVVPFPPGSGSDITARTVAQKMAEQNHWSV LVDNRPGAGGNLGVDSVAKSAPDGHTLVLGQTNNLAINPTLYPQLPYDPLKDLVPVALLSSSPIVLVTSLKSAFKTYADV VTAARMQPDTVTLGVAGSTAQLAGKLAENAAGIRLRHIPYKGAAQGVTDLVGGQIDLYISSVPTLLGQVRNGRLRALAIT SARRSGQLPDTPTLAESGYPGFDVTTWYGILAPAGTPAAIVQQLNQAINQALAQPDVAEKLRSEGGEVLGGSAERFAELL RTEVPRWGKIVKDSGASVN >Mature_338_residues PLLSLPPLARPLPPLPLRLCAAAWLALALAALPAGSPLAQQGYPGRPIRLVVPFPPGSGSDITARTVAQKMAEQNHWSVL VDNRPGAGGNLGVDSVAKSAPDGHTLVLGQTNNLAINPTLYPQLPYDPLKDLVPVALLSSSPIVLVTSLKSAFKTYADVV TAARMQPDTVTLGVAGSTAQLAGKLAENAAGIRLRHIPYKGAAQGVTDLVGGQIDLYISSVPTLLGQVRNGRLRALAITS ARRSGQLPDTPTLAESGYPGFDVTTWYGILAPAGTPAAIVQQLNQAINQALAQPDVAEKLRSEGGEVLGGSAERFAELLR TEVPRWGKIVKDSGASVN
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 35288; Mature: 35157
Theoretical pI: Translated: 9.72; Mature: 9.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLLSLPPLARPLPPLPLRLCAAAWLALALAALPAGSPLAQQGYPGRPIRLVVPFPPGSG CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEEEECCCCCC SDITARTVAQKMAEQNHWSVLVDNRPGAGGNLGVDSVAKSAPDGHTLVLGQTNNLAINPT CCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCEEEEECCCCEEECCE LYPQLPYDPLKDLVPVALLSSSPIVLVTSLKSAFKTYADVVTAARMQPDTVTLGVAGSTA ECCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHH QLAGKLAENAAGIRLRHIPYKGAAQGVTDLVGGQIDLYISSVPTLLGQVRNGRLRALAIT HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCEEEEEHHHHHHHHHHHCCCCEEEEEEE SARRSGQLPDTPTLAESGYPGFDVTTWYGILAPAGTPAAIVQQLNQAINQALAQPDVAEK CHHHCCCCCCCCCHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHH LRSEGGEVLGGSAERFAELLRTEVPRWGKIVKDSGASVN HHHCCCCEECCCHHHHHHHHHHCCCHHHHHHHCCCCCCC >Mature Secondary Structure PLLSLPPLARPLPPLPLRLCAAAWLALALAALPAGSPLAQQGYPGRPIRLVVPFPPGSG CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEEEECCCCCC SDITARTVAQKMAEQNHWSVLVDNRPGAGGNLGVDSVAKSAPDGHTLVLGQTNNLAINPT CCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCEEEEECCCCEEECCE LYPQLPYDPLKDLVPVALLSSSPIVLVTSLKSAFKTYADVVTAARMQPDTVTLGVAGSTA ECCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHH QLAGKLAENAAGIRLRHIPYKGAAQGVTDLVGGQIDLYISSVPTLLGQVRNGRLRALAIT HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCEEEEEHHHHHHHHHHHCCCCEEEEEEE SARRSGQLPDTPTLAESGYPGFDVTTWYGILAPAGTPAAIVQQLNQAINQALAQPDVAEK CHHHCCCCCCCCCHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHH LRSEGGEVLGGSAERFAELLRTEVPRWGKIVKDSGASVN HHHCCCCEECCCHHHHHHHHHHCCCHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2013566 [H]