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The map label for this gene is nrtC [H]

Identifier: 121610890

GI number: 121610890

Start: 4356397

End: 4357812

Strand: Direct

Name: nrtC [H]

Synonym: Veis_3972

Alternate gene names: 121610890

Gene position: 4356397-4357812 (Clockwise)

Preceding gene: 121610889

Following gene: 121610891

Centisome position: 78.26

GC content: 59.39

Gene sequence:

>1416_bases
ATGCCAAGAGAAATCGACAGCCCCCTCTTCCACACTGACGACGCCGGGTACGCAGGCAACATTTGCTCCTGCGGCAAACA
TGCCAGCCAGATGCAGATGGCGCATGGCGATGGGCACCCGGCGGCGCAGCAACATCTGCGGCGAATACGTTCGCAGGATC
CCGAACCATTGAGCAACGATGTGGTGGAAGAATCCGTGTTGCGCGCACTGTTTCCGCAGGCAGCGCAGCGTCGCGGCTTC
CTGCGTGCGGTCGGCGCCAATACGGCGCGCGCGGCCATTGCCAGCATGTTTCCGTTGGATGCGTTGCAGGCGATGGCGCA
AGAAAAGAACGGCGCCATCGAAAAGAAGGACCTCAAAATCGGCTTCATCGCGCTTACCTGCGCAGCACCGCTGATCATGG
CCGATCCGCTCGGCTTTTACCGCAAGCAGGGCCTGAACGTGTCGCTCAACAAAACCGCCGGTTGGGCGCTGATTCGCGAC
AAGATGATCAACAAGGAATATGACGCATCGCATTTCCTGTCGCCGATGCCGCTGGCGATGTCGATCGGTGCGGGCAGCCA
TCCGGTGCAGATGCGCATCGCGACGATCCAGAACATCAATGGCCAGGCCATCACGCTGCACGTCAAGCACAAGGACAAAC
GCAATCCCGGGCAGTGGAATGGCTTCAGGTTTGCGGTGCCGTTCGAGTATTCGATGCACAACTTCCTGCTGCGCTATTAC
CTTGCCGAAAACGGACTCGATCCGGATCGTGACGTGCAGATCCGCGTCACACCGCCACCGGAAATGGTGGCCAATCTGCG
CGCCGGCAACATCGACGGCTTCCTCGGTCCCGATCCGTTCAATCAGCGCGCGGTGTACGACGAAGTCGGTTTCATCCATA
TCCTCTCCAAGGAAATCTGGGACGGTCATCCATGCTGCGCGTTCGGCATGTCGGAAGATTTCGTCAAACAAAATCCGAAT
ACCTTCGCGGCCTTGTTCCGCGCCGTGCTGACTGCCGCAGCGATGGCGCGCGATCCGGCCAATCGTTCTCTGGTGGCCAA
GGTGATTTCGCCGGCAGCCTATTTGAATCAGCCGGAAACGGTGGTCGAGCAGGTGCTGACCGGCCGCTTCGCTGACGGTC
TCGGCAACGTGAAAACCGTGCCGGGCCGCGCCGACTTCGATCCGGTGCCGTGGGATTCGATGGCGGTGTGGATTTTGAGC
CAGTTAAAGCGCTGGGGTTATGTCAAAGGCGAGATCGATTACAAAGGCATCGCCGAGCGCGTGCTGCTGTTGACCGATGC
CAAAAAATACATGAAGGAACTCGGCCAGCCAGTGCCGGACGGCGCCTATCGCAAACACATGATCATGGGCAAGGAATTCG
ACCCGGCCAAGGCCGACGCCTACGTCAACAGCTTTGCCATCAAGAGGACGAGCTGA

Upstream 100 bases:

>100_bases
TGAAAATGGCACCCGTGTGGCAAGGCACTGATGGCAAGACCCTTGCATGTAGTCGGGCAACAAGGCAGTTTTACTTCAAC
TTCATCACACGAGGGAATTC

Downstream 100 bases:

>100_bases
TGACGCCGGCTGCGCAATTGGGCTGGCGCACCGGGCTGATCTCGCTGGTGATTTTCGGCTGTCTGCTGCTGGTGTGGCAT
CTGGCGACAGCGCCAGGGCA

Product: ABC transporter nitrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 471; Mature: 470

Protein sequence:

>471_residues
MPREIDSPLFHTDDAGYAGNICSCGKHASQMQMAHGDGHPAAQQHLRRIRSQDPEPLSNDVVEESVLRALFPQAAQRRGF
LRAVGANTARAAIASMFPLDALQAMAQEKNGAIEKKDLKIGFIALTCAAPLIMADPLGFYRKQGLNVSLNKTAGWALIRD
KMINKEYDASHFLSPMPLAMSIGAGSHPVQMRIATIQNINGQAITLHVKHKDKRNPGQWNGFRFAVPFEYSMHNFLLRYY
LAENGLDPDRDVQIRVTPPPEMVANLRAGNIDGFLGPDPFNQRAVYDEVGFIHILSKEIWDGHPCCAFGMSEDFVKQNPN
TFAALFRAVLTAAAMARDPANRSLVAKVISPAAYLNQPETVVEQVLTGRFADGLGNVKTVPGRADFDPVPWDSMAVWILS
QLKRWGYVKGEIDYKGIAERVLLLTDAKKYMKELGQPVPDGAYRKHMIMGKEFDPAKADAYVNSFAIKRTS

Sequences:

>Translated_471_residues
MPREIDSPLFHTDDAGYAGNICSCGKHASQMQMAHGDGHPAAQQHLRRIRSQDPEPLSNDVVEESVLRALFPQAAQRRGF
LRAVGANTARAAIASMFPLDALQAMAQEKNGAIEKKDLKIGFIALTCAAPLIMADPLGFYRKQGLNVSLNKTAGWALIRD
KMINKEYDASHFLSPMPLAMSIGAGSHPVQMRIATIQNINGQAITLHVKHKDKRNPGQWNGFRFAVPFEYSMHNFLLRYY
LAENGLDPDRDVQIRVTPPPEMVANLRAGNIDGFLGPDPFNQRAVYDEVGFIHILSKEIWDGHPCCAFGMSEDFVKQNPN
TFAALFRAVLTAAAMARDPANRSLVAKVISPAAYLNQPETVVEQVLTGRFADGLGNVKTVPGRADFDPVPWDSMAVWILS
QLKRWGYVKGEIDYKGIAERVLLLTDAKKYMKELGQPVPDGAYRKHMIMGKEFDPAKADAYVNSFAIKRTS
>Mature_470_residues
PREIDSPLFHTDDAGYAGNICSCGKHASQMQMAHGDGHPAAQQHLRRIRSQDPEPLSNDVVEESVLRALFPQAAQRRGFL
RAVGANTARAAIASMFPLDALQAMAQEKNGAIEKKDLKIGFIALTCAAPLIMADPLGFYRKQGLNVSLNKTAGWALIRDK
MINKEYDASHFLSPMPLAMSIGAGSHPVQMRIATIQNINGQAITLHVKHKDKRNPGQWNGFRFAVPFEYSMHNFLLRYYL
AENGLDPDRDVQIRVTPPPEMVANLRAGNIDGFLGPDPFNQRAVYDEVGFIHILSKEIWDGHPCCAFGMSEDFVKQNPNT
FAALFRAVLTAAAMARDPANRSLVAKVISPAAYLNQPETVVEQVLTGRFADGLGNVKTVPGRADFDPVPWDSMAVWILSQ
LKRWGYVKGEIDYKGIAERVLLLTDAKKYMKELGQPVPDGAYRKHMIMGKEFDPAKADAYVNSFAIKRTS

Specific function: Probably part of a high-affinity binding-protein- dependent transport system for nitrate. Probably responsible for energy coupling to the transport system [H]

COG id: COG0715

COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR015168
- InterPro:   IPR005890 [H]

Pfam domain/function: PF00005 ABC_tran; PF09084 NMT1 [H]

EC number: NA

Molecular weight: Translated: 52118; Mature: 51987

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPREIDSPLFHTDDAGYAGNICSCGKHASQMQMAHGDGHPAAQQHLRRIRSQDPEPLSND
CCCCCCCCCEECCCCCCCCCHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHH
VVEESVLRALFPQAAQRRGFLRAVGANTARAAIASMFPLDALQAMAQEKNGAIEKKDLKI
HHHHHHHHHHHHHHHHHCCCEEHHCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCEE
GFIALTCAAPLIMADPLGFYRKQGLNVSLNKTAGWALIRDKMINKEYDASHFLSPMPLAM
EEEEHHHHCHHHHHCCHHHHHHCCCCEEECCCCCHHHHHHHHHCCCCCHHHCCCCCCCEE
SIGAGSHPVQMRIATIQNINGQAITLHVKHKDKRNPGQWNGFRFAVPFEYSMHNFLLRYY
ECCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEECHHHHHHHHHHHH
LAENGLDPDRDVQIRVTPPPEMVANLRAGNIDGFLGPDPFNQRAVYDEVGFIHILSKEIW
HHHCCCCCCCCEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCHHEEHHHHHC
DGHPCCAFGMSEDFVKQNPNTFAALFRAVLTAAAMARDPANRSLVAKVISPAAYLNQPET
CCCCEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHH
VVEQVLTGRFADGLGNVKTVPGRADFDPVPWDSMAVWILSQLKRWGYVKGEIDYKGIAER
HHHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
VLLLTDAKKYMKELGQPVPDGAYRKHMIMGKEFDPAKADAYVNSFAIKRTS
HHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHEEEEECC
>Mature Secondary Structure 
PREIDSPLFHTDDAGYAGNICSCGKHASQMQMAHGDGHPAAQQHLRRIRSQDPEPLSND
CCCCCCCCEECCCCCCCCCHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHH
VVEESVLRALFPQAAQRRGFLRAVGANTARAAIASMFPLDALQAMAQEKNGAIEKKDLKI
HHHHHHHHHHHHHHHHHCCCEEHHCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCEE
GFIALTCAAPLIMADPLGFYRKQGLNVSLNKTAGWALIRDKMINKEYDASHFLSPMPLAM
EEEEHHHHCHHHHHCCHHHHHHCCCCEEECCCCCHHHHHHHHHCCCCCHHHCCCCCCCEE
SIGAGSHPVQMRIATIQNINGQAITLHVKHKDKRNPGQWNGFRFAVPFEYSMHNFLLRYY
ECCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEECHHHHHHHHHHHH
LAENGLDPDRDVQIRVTPPPEMVANLRAGNIDGFLGPDPFNQRAVYDEVGFIHILSKEIW
HHHCCCCCCCCEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHCCHHEEHHHHHC
DGHPCCAFGMSEDFVKQNPNTFAALFRAVLTAAAMARDPANRSLVAKVISPAAYLNQPET
CCCCEEECCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHH
VVEQVLTGRFADGLGNVKTVPGRADFDPVPWDSMAVWILSQLKRWGYVKGEIDYKGIAER
HHHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
VLLLTDAKKYMKELGQPVPDGAYRKHMIMGKEFDPAKADAYVNSFAIKRTS
HHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]