| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
Click here to switch to the map view.
The map label for this gene is braF [H]
Identifier: 121610754
GI number: 121610754
Start: 4232455
End: 4233231
Strand: Direct
Name: braF [H]
Synonym: Veis_3834
Alternate gene names: 121610754
Gene position: 4232455-4233231 (Clockwise)
Preceding gene: 121610753
Following gene: 121610755
Centisome position: 76.03
GC content: 63.71
Gene sequence:
>777_bases ATGAGCGGGAGCACACAGCCCTTGCTTGTGCTGAGCGATGTGCGCAAGACCTTTGGCGGCGTTACGGCGCTCAAGGGCAT CAGCTTTGGTGTGGGTGCGCGTGAGGTGGTGGGGCTGATCGGCCCCAATGGTTCGGGCAAGTCCACCTGCGTGAATGTCA TTTCGGGCGCACTGCCGCCCACCCAGGGGCAGATCAGCCTCGAGGGACAGCGCATCAGCGGTCTGCCAGCCCATCAGGTA GTGGCCCGAGGGCTGGCCCGGACCTTTCAGACAACGCAGTTGTTTGGCGAATTCAGCGCGCTCGACAATGTGCTGGTGGG GGCCAATGTCTGCCAGCGCCAGGGCTTGCTGGCGCAGATGCGGGGTTGGCGCAGTGCGCGCCGCGATACTGCGGATGCGC AGGTCCGGGCGCTGGAATTGCTCGAATTCACAGGCTTGGCCGACGAGCGCGATGTGCCGGCGCGCCGGTTGCCCGTGGCC CGGCAGCGCTTGCTGATGATCGCCTGTGCTTTGGCCAGCCGGTCTTCGGTGTTGTTGATGGACGAACCGGCAGCGGGCAT GGTCGCCAGCGAGCGGCGCATGCTATCGGCATTGATCCGTCGACTGCCGCGACGCAATGTGAGCGTGATGGTGATCGAAC ACCATATGGCGCTGATCATGGAGGTCTGCCAGCGCATCGTCGTTCTCAATTTTGGTGAAAAAATTGCCGAAGGCACGCCC GCCGAGATCCGGGCCAATCCCGCCGTGATCGAGGCTTACCTGGGACACCAGCAGTGA
Upstream 100 bases:
>100_bases GTGCCGCAGCGATCGACGGTGCGCGCGGCATCGGGGAGCTCCTGCGGCACCGGGCCGTGCAGATGCCCGTCGCGCGCACG GTGGCCGACAAGGTTGCAGC
Downstream 100 bases:
>100_bases AGCCGATATTGCAGGTTCAGGGCCTGGTTGCAGGGTACGGCAACATCGAAGCCGTGCATGGCGTCTCGTTGGATGTGGCG GCTGGCGAGTGCGTGGCACT
Product: ABC transporter-like protein
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 258; Mature: 257
Protein sequence:
>258_residues MSGSTQPLLVLSDVRKTFGGVTALKGISFGVGAREVVGLIGPNGSGKSTCVNVISGALPPTQGQISLEGQRISGLPAHQV VARGLARTFQTTQLFGEFSALDNVLVGANVCQRQGLLAQMRGWRSARRDTADAQVRALELLEFTGLADERDVPARRLPVA RQRLLMIACALASRSSVLLMDEPAAGMVASERRMLSALIRRLPRRNVSVMVIEHHMALIMEVCQRIVVLNFGEKIAEGTP AEIRANPAVIEAYLGHQQ
Sequences:
>Translated_258_residues MSGSTQPLLVLSDVRKTFGGVTALKGISFGVGAREVVGLIGPNGSGKSTCVNVISGALPPTQGQISLEGQRISGLPAHQV VARGLARTFQTTQLFGEFSALDNVLVGANVCQRQGLLAQMRGWRSARRDTADAQVRALELLEFTGLADERDVPARRLPVA RQRLLMIACALASRSSVLLMDEPAAGMVASERRMLSALIRRLPRRNVSVMVIEHHMALIMEVCQRIVVLNFGEKIAEGTP AEIRANPAVIEAYLGHQQ >Mature_257_residues SGSTQPLLVLSDVRKTFGGVTALKGISFGVGAREVVGLIGPNGSGKSTCVNVISGALPPTQGQISLEGQRISGLPAHQVV ARGLARTFQTTQLFGEFSALDNVLVGANVCQRQGLLAQMRGWRSARRDTADAQVRALELLEFTGLADERDVPARRLPVAR QRLLMIACALASRSSVLLMDEPAAGMVASERRMLSALIRRLPRRNVSVMVIEHHMALIMEVCQRIVVLNFGEKIAEGTPA EIRANPAVIEAYLGHQQ
Specific function: Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids [H]
COG id: COG0411
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI105990541, Length=206, Percent_Identity=27.1844660194175, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI6005701, Length=241, Percent_Identity=28.6307053941909, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI27477115, Length=240, Percent_Identity=27.9166666666667, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI27436953, Length=239, Percent_Identity=26.7782426778243, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI153792144, Length=211, Percent_Identity=27.4881516587678, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI45446740, Length=221, Percent_Identity=28.9592760180996, Blast_Score=74, Evalue=9e-14, Organism=Homo sapiens, GI47078218, Length=221, Percent_Identity=28.9592760180996, Blast_Score=74, Evalue=9e-14, Organism=Homo sapiens, GI116734710, Length=211, Percent_Identity=27.4881516587678, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI150417984, Length=249, Percent_Identity=27.710843373494, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI27262624, Length=195, Percent_Identity=27.1794871794872, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI27262626, Length=195, Percent_Identity=27.1794871794872, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI31657092, Length=234, Percent_Identity=25.2136752136752, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI9955968, Length=222, Percent_Identity=25.6756756756757, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI9955966, Length=222, Percent_Identity=25.6756756756757, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI45243524, Length=222, Percent_Identity=25.6756756756757, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI9665248, Length=219, Percent_Identity=27.8538812785388, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI1789864, Length=252, Percent_Identity=39.2857142857143, Blast_Score=181, Evalue=4e-47, Organism=Escherichia coli, GI1790525, Length=252, Percent_Identity=26.984126984127, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI48995001, Length=227, Percent_Identity=32.15859030837, Blast_Score=106, Evalue=1e-24, Organism=Escherichia coli, GI1789593, Length=247, Percent_Identity=30.3643724696356, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1788210, Length=251, Percent_Identity=28.2868525896414, Blast_Score=103, Evalue=8e-24, Organism=Escherichia coli, GI1788472, Length=243, Percent_Identity=27.9835390946502, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI1789991, Length=230, Percent_Identity=28.695652173913, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI48994943, Length=249, Percent_Identity=27.3092369477912, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1788761, Length=240, Percent_Identity=27.9166666666667, Blast_Score=95, Evalue=4e-21, Organism=Escherichia coli, GI87081782, Length=240, Percent_Identity=28.75, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1786398, Length=248, Percent_Identity=29.0322580645161, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1790190, Length=252, Percent_Identity=26.984126984127, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1787792, Length=262, Percent_Identity=29.0076335877863, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1786319, Length=226, Percent_Identity=29.2035398230088, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1787029, Length=252, Percent_Identity=26.5873015873016, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI87081709, Length=239, Percent_Identity=26.7782426778243, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1788225, Length=244, Percent_Identity=28.2786885245902, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787041, Length=266, Percent_Identity=27.8195488721804, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI87081791, Length=243, Percent_Identity=25.5144032921811, Blast_Score=84, Evalue=6e-18, Organism=Escherichia coli, GI1787370, Length=246, Percent_Identity=25.2032520325203, Blast_Score=83, Evalue=1e-17, Organism=Escherichia coli, GI87082267, Length=242, Percent_Identity=27.2727272727273, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1786872, Length=236, Percent_Identity=28.3898305084746, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787712, Length=238, Percent_Identity=28.9915966386555, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1787105, Length=255, Percent_Identity=28.6274509803922, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1790467, Length=240, Percent_Identity=26.6666666666667, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1788450, Length=243, Percent_Identity=26.3374485596708, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1790544, Length=248, Percent_Identity=27.8225806451613, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI87082268, Length=248, Percent_Identity=25, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI1789032, Length=229, Percent_Identity=27.5109170305677, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI48994997, Length=252, Percent_Identity=26.5873015873016, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1787759, Length=262, Percent_Identity=28.6259541984733, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1786345, Length=228, Percent_Identity=30.2631578947368, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1786654, Length=222, Percent_Identity=26.1261261261261, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1789672, Length=241, Percent_Identity=23.6514522821577, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI48994883, Length=264, Percent_Identity=24.6212121212121, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1786803, Length=227, Percent_Identity=25.1101321585903, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1789963, Length=243, Percent_Identity=29.6296296296296, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1786563, Length=226, Percent_Identity=27.4336283185841, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787112, Length=239, Percent_Identity=29.7071129707113, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI87081834, Length=211, Percent_Identity=26.0663507109005, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1788897, Length=223, Percent_Identity=23.7668161434978, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1789873, Length=225, Percent_Identity=26.2222222222222, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1790739, Length=248, Percent_Identity=27.0161290322581, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1787089, Length=253, Percent_Identity=24.901185770751, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1787548, Length=264, Percent_Identity=26.1363636363636, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1786253, Length=230, Percent_Identity=24.7826086956522, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1788506, Length=231, Percent_Identity=27.2727272727273, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1788644, Length=249, Percent_Identity=28.5140562248996, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1786703, Length=217, Percent_Identity=27.1889400921659, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI71983516, Length=243, Percent_Identity=27.5720164609054, Blast_Score=91, Evalue=7e-19, Organism=Caenorhabditis elegans, GI71983510, Length=243, Percent_Identity=27.5720164609054, Blast_Score=91, Evalue=7e-19, Organism=Caenorhabditis elegans, GI71983523, Length=243, Percent_Identity=27.5720164609054, Blast_Score=91, Evalue=8e-19, Organism=Caenorhabditis elegans, GI17510237, Length=242, Percent_Identity=25.6198347107438, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI115533608, Length=236, Percent_Identity=28.3898305084746, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI71992290, Length=210, Percent_Identity=27.1428571428571, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI221512771, Length=230, Percent_Identity=28.695652173913, Blast_Score=91, Evalue=8e-19, Organism=Drosophila melanogaster, GI24643674, Length=242, Percent_Identity=27.6859504132231, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI116007184, Length=226, Percent_Identity=29.2035398230088, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI221500365, Length=226, Percent_Identity=29.2035398230088, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI28574150, Length=229, Percent_Identity=27.5109170305677, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI116007328, Length=229, Percent_Identity=27.5109170305677, Blast_Score=83, Evalue=2e-16, Organism=Drosophila melanogaster, GI24648314, Length=234, Percent_Identity=25.6410256410256, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI24666092, Length=220, Percent_Identity=25.9090909090909, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI28573571, Length=236, Percent_Identity=28.3898305084746, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI28573573, Length=228, Percent_Identity=28.0701754385965, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI28571209, Length=237, Percent_Identity=25.7383966244726, Blast_Score=77, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 27727; Mature: 27596
Theoretical pI: Translated: 10.72; Mature: 10.72
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGSTQPLLVLSDVRKTFGGVTALKGISFGVGAREVVGLIGPNGSGKSTCVNVISGALPP CCCCCCCEEHHHHHHHHHCCHHHHHHCCCCCCHHHHHEEECCCCCCHHHHHHHHHCCCCC TQGQISLEGQRISGLPAHQVVARGLARTFQTTQLFGEFSALDNVLVGANVCQRQGLLAQM CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHH RGWRSARRDTADAQVRALELLEFTGLADERDVPARRLPVARQRLLMIACALASRSSVLLM HHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCHHHHHHHHHHHHHHHCCCCEEEE DEPAAGMVASERRMLSALIRRLPRRNVSVMVIEHHMALIMEVCQRIVVLNFGEKIAEGTP ECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCHHHHCCCC AEIRANPAVIEAYLGHQQ CCEECCHHHHHHHCCCCC >Mature Secondary Structure SGSTQPLLVLSDVRKTFGGVTALKGISFGVGAREVVGLIGPNGSGKSTCVNVISGALPP CCCCCCEEHHHHHHHHHCCHHHHHHCCCCCCHHHHHEEECCCCCCHHHHHHHHHCCCCC TQGQISLEGQRISGLPAHQVVARGLARTFQTTQLFGEFSALDNVLVGANVCQRQGLLAQM CCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHH RGWRSARRDTADAQVRALELLEFTGLADERDVPARRLPVARQRLLMIACALASRSSVLLM HHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCHHHHHHHHHHHHHHHCCCCEEEE DEPAAGMVASERRMLSALIRRLPRRNVSVMVIEHHMALIMEVCQRIVVLNFGEKIAEGTP ECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCHHHHCCCC AEIRANPAVIEAYLGHQQ CCEECCHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 2120183; 10984043 [H]