| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
Click here to switch to the map view.
The map label for this gene is 121610516
Identifier: 121610516
GI number: 121610516
Start: 3963573
End: 3964577
Strand: Direct
Name: 121610516
Synonym: Veis_3587
Alternate gene names: NA
Gene position: 3963573-3964577 (Clockwise)
Preceding gene: 121610512
Following gene: 121610517
Centisome position: 71.2
GC content: 69.05
Gene sequence:
>1005_bases ATGAAAGCTGCTGCCGACTGCTCGCGCCGCCAGGCGCTGGGCACGGGCCTGGGTTTCGTTGCCACCGCTCTGGCGCCAGG GGTGGCGGCAGCGCAAGGCCCTGCCGCGTGGCCCGGCAAGGCCGTGACGCTGGTGGTCGGCGCGCCGCCCGGCGGTCAGA CCGACTTTGCGATCCGGGTGCAGATACCCGGCTTGCAGGCCGCGCTGGGCCAGCCTTGCGTGATCGACAACCGCCCGGGC GCCGGCGGCAACATCAGCGTCGAGCATGTGCTCAAGGGCCCGAGCGACGGCTACCGCCTGCTGGTGGGCAACGGCGGCAA CATGACCATGAACCCCCACACCTACCGCAACACACCGATGGTCGACCCGCGCAGGCTGGTGCCGATCGGCCTGCTGCTGC AGTCGGCGCTGGTGCTCGCAGTGCATCCGGACGTGGGTGCGAAGAACTTCAGCGAGTTGCTCGCCTGGGTCAAGGCGCAG GACGGCATCGACTACGCCTCCTCCGGGCCTGGCAGTCTCACGCAGGCGGCGATGGAACTGCTGCGCGAGCGCATGGGCCG GCCGGCGATGACCCACATCGCCTACAAGGGCAGCGCGCCGGCGCTGCACGACTTGATCGCTGGCCGCGTGAAGCTGATGT TCGACGCGGTGTCGGTCATCGCACCCTTCGTCCGGTCAGGGCAGTTGCGGGCGCTGATGGTCACCAGCGACAGGCGCGTG CCCGCGCTGGCGCAGGTTCCGACGGCGGACGAACTCGGCCTGAAGGATTTCATCGTCACCTCGTTCATCGGCCTGTACGG CCCGCCCGGCCTGTCCCCCGAGATCGTCAGGAAGGCCAACGCAGCGCTGAACCAATCGATGGCCGATCCGGTCACGGTCA AGACGATCACCGATCGCGGCGACGAGCCGGGCGGCGGCACGCCCGAGCGCCTGATGGGCATGACCCACGGGTACTACGAG ACTTGGAGGCAGGTCGTGCAGGCCAACGATATCCGGGCCGATTGA
Upstream 100 bases:
>100_bases TGGCCACTTGCAGGCCTGGTTTGCCTCGGGTTATTCCCTGGCTCGGTGCCATTCTTGCCAGCAATAATCGATTGACTCTG ATGAAAATGGGAGACGACCA
Downstream 100 bases:
>100_bases GCGCCTGTGCCATGGCGCCCCCGGTTCCCGGACCGTGGGCACCGCGCGGCCGCCCGAAGGCGCCCATACCGTAGCCGAAG GCAAAGGTTCCCCAGTGAAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 334; Mature: 334
Protein sequence:
>334_residues MKAAADCSRRQALGTGLGFVATALAPGVAAAQGPAAWPGKAVTLVVGAPPGGQTDFAIRVQIPGLQAALGQPCVIDNRPG AGGNISVEHVLKGPSDGYRLLVGNGGNMTMNPHTYRNTPMVDPRRLVPIGLLLQSALVLAVHPDVGAKNFSELLAWVKAQ DGIDYASSGPGSLTQAAMELLRERMGRPAMTHIAYKGSAPALHDLIAGRVKLMFDAVSVIAPFVRSGQLRALMVTSDRRV PALAQVPTADELGLKDFIVTSFIGLYGPPGLSPEIVRKANAALNQSMADPVTVKTITDRGDEPGGGTPERLMGMTHGYYE TWRQVVQANDIRAD
Sequences:
>Translated_334_residues MKAAADCSRRQALGTGLGFVATALAPGVAAAQGPAAWPGKAVTLVVGAPPGGQTDFAIRVQIPGLQAALGQPCVIDNRPG AGGNISVEHVLKGPSDGYRLLVGNGGNMTMNPHTYRNTPMVDPRRLVPIGLLLQSALVLAVHPDVGAKNFSELLAWVKAQ DGIDYASSGPGSLTQAAMELLRERMGRPAMTHIAYKGSAPALHDLIAGRVKLMFDAVSVIAPFVRSGQLRALMVTSDRRV PALAQVPTADELGLKDFIVTSFIGLYGPPGLSPEIVRKANAALNQSMADPVTVKTITDRGDEPGGGTPERLMGMTHGYYE TWRQVVQANDIRAD >Mature_334_residues MKAAADCSRRQALGTGLGFVATALAPGVAAAQGPAAWPGKAVTLVVGAPPGGQTDFAIRVQIPGLQAALGQPCVIDNRPG AGGNISVEHVLKGPSDGYRLLVGNGGNMTMNPHTYRNTPMVDPRRLVPIGLLLQSALVLAVHPDVGAKNFSELLAWVKAQ DGIDYASSGPGSLTQAAMELLRERMGRPAMTHIAYKGSAPALHDLIAGRVKLMFDAVSVIAPFVRSGQLRALMVTSDRRV PALAQVPTADELGLKDFIVTSFIGLYGPPGLSPEIVRKANAALNQSMADPVTVKTITDRGDEPGGGTPERLMGMTHGYYE TWRQVVQANDIRAD
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 35039; Mature: 35039
Theoretical pI: Translated: 9.35; Mature: 9.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKAAADCSRRQALGTGLGFVATALAPGVAAAQGPAAWPGKAVTLVVGAPPGGQTDFAIRV CCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEE QIPGLQAALGQPCVIDNRPGAGGNISVEHVLKGPSDGYRLLVGNGGNMTMNPHTYRNTPM ECCCHHHHCCCCEEECCCCCCCCCEEHHEEECCCCCCCEEEEECCCCEEECCCCCCCCCC VDPRRLVPIGLLLQSALVLAVHPDVGAKNFSELLAWVKAQDGIDYASSGPGSLTQAAMEL CCCHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH LRERMGRPAMTHIAYKGSAPALHDLIAGRVKLMFDAVSVIAPFVRSGQLRALMVTSDRRV HHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC PALAQVPTADELGLKDFIVTSFIGLYGPPGLSPEIVRKANAALNQSMADPVTVKTITDRG CHHHCCCCCHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC DEPGGGTPERLMGMTHGYYETWRQVVQANDIRAD CCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MKAAADCSRRQALGTGLGFVATALAPGVAAAQGPAAWPGKAVTLVVGAPPGGQTDFAIRV CCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEEEE QIPGLQAALGQPCVIDNRPGAGGNISVEHVLKGPSDGYRLLVGNGGNMTMNPHTYRNTPM ECCCHHHHCCCCEEECCCCCCCCCEEHHEEECCCCCCCEEEEECCCCEEECCCCCCCCCC VDPRRLVPIGLLLQSALVLAVHPDVGAKNFSELLAWVKAQDGIDYASSGPGSLTQAAMEL CCCHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH LRERMGRPAMTHIAYKGSAPALHDLIAGRVKLMFDAVSVIAPFVRSGQLRALMVTSDRRV HHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC PALAQVPTADELGLKDFIVTSFIGLYGPPGLSPEIVRKANAALNQSMADPVTVKTITDRG CHHHCCCCCHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC DEPGGGTPERLMGMTHGYYETWRQVVQANDIRAD CCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3299368 [H]