| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121610502
Identifier: 121610502
GI number: 121610502
Start: 3950715
End: 3951959
Strand: Direct
Name: 121610502
Synonym: Veis_3573
Alternate gene names: NA
Gene position: 3950715-3951959 (Clockwise)
Preceding gene: 121610501
Following gene: 121610503
Centisome position: 70.97
GC content: 63.61
Gene sequence:
>1245_bases ATGAAAAAACACATTCTGGGACTGGCCATCACCGCCGCCTGCGCGCTGCCTGCGGCCGCGCAGCAAAGCGTCGAGGTGCT GCACTGGTGGACCGCCGGCGGCGAAGCCGCCGCGCTGAACGTTCTCAAGGGCAACCTGGAAAAGCAAGGCGTCAAGTGGA ACGACATGCCGGTGGCCGGCGGCGGCGGGGAGGCGGCGATGACCGTGGTGCGCGCGCGCGTGACCGCCGGCAACCCGCCC ACCGCCGTGCAAATGATGGGCTTCGACCTGCTCGACTGGGGCCGGCAAGGGGTTCTGAGCGACCTCAACGAACTGGCCAC CAAACAGGGCTGGGACAAGGTGGTGCCGCCTGCGCTGCAAAAGTTCTCGAAGTTCAACGGCAAGTGGATTGCGGTGCCCG TGAACATACACTCGACCAACTGGGTCTGGGCGAACAAGGAGGTGCTGGCCAAGGCCGGCGTCACCAGCGACCCCGGCCAC TGGACTTGGGATGACTTCATCGCCGCCGCGCAGCAGGTGCAAAAAGCCGGCTTCATCGCCATCGCTCACGGGGGCCAGCC CTGGCAGGAAGCCACGGTATTCGACGGCGTGGCGCTGTCCACCGGTGGCGCCGACTACTATCGCCGGGCCTTGATCGAAC TCGACGGCAAGGCGCTGAATTCGCCGACCACCGAGAAGGTCTTCGAGCGCATGGCGCAACTGCGCAAACTGGTCGACAAG GACTTTTCCGGCCGTGACTGGAATGTGGCCTCCGGCATGGTGATCAGCGGCAAGGCCGGTTTTCAGTTGATGGGCGACTG GGCCAAGGGCGAATTCATCACCGCCAAGAAACTGCCCGGCAAGGATTTCCTGTGCTTTCGCACCCCCGGCACGCAGGGGA GCGTGACCTTCAACGCCGATCAGTTTGCAATGTTCAAGGTCGGCGCCGACAAGGTCGCGGCCCAGTCCTTGCTGGCCAGC GCCATCATGGAACCGGCATTCCAGTCGACGTTCAACGTCGTCAAGGGCTCCGTTCCGGCCCGCACCGATGTGCCCGACAC CGCTTTCGATGCCTGCGGCAAAAAGGGCATGAAGGACCTGGCCGAGGCGAGCAGCAAAAACCAACTGCTCGGCTCCATGG GCCATGGCTATGCGGTGCCGGCGTCGATCAAGAACGCCTTTTATGACGTCATCACGCGGCACTTCAATGGCCAGATCGAC AACAAGAAGGCGGTCGCAGAAATGGCTGCGGCGGCCAAGGATTGA
Upstream 100 bases:
>100_bases CGTGCACCTGCATCTTGGTGCGCGCACCGACTGGTATTTGCCCCCGGCCTGATTTCTTTCCCCTGCCCCGCCCTGCAACC CTTCGACTGAGGAGATTCTG
Downstream 100 bases:
>100_bases CCATTGACCCACACCCCCTTGGCCACCTGCGGCGCCGGCCCCTCCACGGGGCGGCGCGGGCGGCGCACCGTGTCATGAGA AACCGGGTCATGGAGAAATC
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 414; Mature: 414
Protein sequence:
>414_residues MKKHILGLAITAACALPAAAQQSVEVLHWWTAGGEAAALNVLKGNLEKQGVKWNDMPVAGGGGEAAMTVVRARVTAGNPP TAVQMMGFDLLDWGRQGVLSDLNELATKQGWDKVVPPALQKFSKFNGKWIAVPVNIHSTNWVWANKEVLAKAGVTSDPGH WTWDDFIAAAQQVQKAGFIAIAHGGQPWQEATVFDGVALSTGGADYYRRALIELDGKALNSPTTEKVFERMAQLRKLVDK DFSGRDWNVASGMVISGKAGFQLMGDWAKGEFITAKKLPGKDFLCFRTPGTQGSVTFNADQFAMFKVGADKVAAQSLLAS AIMEPAFQSTFNVVKGSVPARTDVPDTAFDACGKKGMKDLAEASSKNQLLGSMGHGYAVPASIKNAFYDVITRHFNGQID NKKAVAEMAAAAKD
Sequences:
>Translated_414_residues MKKHILGLAITAACALPAAAQQSVEVLHWWTAGGEAAALNVLKGNLEKQGVKWNDMPVAGGGGEAAMTVVRARVTAGNPP TAVQMMGFDLLDWGRQGVLSDLNELATKQGWDKVVPPALQKFSKFNGKWIAVPVNIHSTNWVWANKEVLAKAGVTSDPGH WTWDDFIAAAQQVQKAGFIAIAHGGQPWQEATVFDGVALSTGGADYYRRALIELDGKALNSPTTEKVFERMAQLRKLVDK DFSGRDWNVASGMVISGKAGFQLMGDWAKGEFITAKKLPGKDFLCFRTPGTQGSVTFNADQFAMFKVGADKVAAQSLLAS AIMEPAFQSTFNVVKGSVPARTDVPDTAFDACGKKGMKDLAEASSKNQLLGSMGHGYAVPASIKNAFYDVITRHFNGQID NKKAVAEMAAAAKD >Mature_414_residues MKKHILGLAITAACALPAAAQQSVEVLHWWTAGGEAAALNVLKGNLEKQGVKWNDMPVAGGGGEAAMTVVRARVTAGNPP TAVQMMGFDLLDWGRQGVLSDLNELATKQGWDKVVPPALQKFSKFNGKWIAVPVNIHSTNWVWANKEVLAKAGVTSDPGH WTWDDFIAAAQQVQKAGFIAIAHGGQPWQEATVFDGVALSTGGADYYRRALIELDGKALNSPTTEKVFERMAQLRKLVDK DFSGRDWNVASGMVISGKAGFQLMGDWAKGEFITAKKLPGKDFLCFRTPGTQGSVTFNADQFAMFKVGADKVAAQSLLAS AIMEPAFQSTFNVVKGSVPARTDVPDTAFDACGKKGMKDLAEASSKNQLLGSMGHGYAVPASIKNAFYDVITRHFNGQID NKKAVAEMAAAAKD
Specific function: Part of a binding-protein-dependent transport system for a sugar (Potential) [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 1 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 44275; Mature: 44275
Theoretical pI: Translated: 9.30; Mature: 9.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKHILGLAITAACALPAAAQQSVEVLHWWTAGGEAAALNVLKGNLEKQGVKWNDMPVAG CCCHHHHHHHHHHHHCCHHHHHCEEEEEEECCCCCCEEHHHHHCCHHHCCCCCCCCCCCC GGGEAAMTVVRARVTAGNPPTAVQMMGFDLLDWGRQGVLSDLNELATKQGWDKVVPPALQ CCCHHHHHHHHHHHCCCCCCCEEHHHCCHHHHHCHHHHHHHHHHHHHHCCCCCCCCHHHH KFSKFNGKWIAVPVNIHSTNWVWANKEVLAKAGVTSDPGHWTWDDFIAAAQQVQKAGFIA HHHHCCCEEEEEEEEECCCCEEECCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCEEE IAHGGQPWQEATVFDGVALSTGGADYYRRALIELDGKALNSPTTEKVFERMAQLRKLVDK EECCCCCCHHHHHHCCEEEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC DFSGRDWNVASGMVISGKAGFQLMGDWAKGEFITAKKLPGKDFLCFRTPGTQGSVTFNAD CCCCCCCCCCCCEEEECCCCCEEEECCCCCCEEEEECCCCCCEEEEECCCCCCCEEECCC QFAMFKVGADKVAAQSLLASAIMEPAFQSTFNVVKGSVPARTDVPDTAFDACGKKGMKDL CEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH AEASSKNQLLGSMGHGYAVPASIKNAFYDVITRHFNGQIDNKKAVAEMAAAAKD HHHCHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC >Mature Secondary Structure MKKHILGLAITAACALPAAAQQSVEVLHWWTAGGEAAALNVLKGNLEKQGVKWNDMPVAG CCCHHHHHHHHHHHHCCHHHHHCEEEEEEECCCCCCEEHHHHHCCHHHCCCCCCCCCCCC GGGEAAMTVVRARVTAGNPPTAVQMMGFDLLDWGRQGVLSDLNELATKQGWDKVVPPALQ CCCHHHHHHHHHHHCCCCCCCEEHHHCCHHHHHCHHHHHHHHHHHHHHCCCCCCCCHHHH KFSKFNGKWIAVPVNIHSTNWVWANKEVLAKAGVTSDPGHWTWDDFIAAAQQVQKAGFIA HHHHCCCEEEEEEEEECCCCEEECCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCEEE IAHGGQPWQEATVFDGVALSTGGADYYRRALIELDGKALNSPTTEKVFERMAQLRKLVDK EECCCCCCHHHHHHCCEEEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCC DFSGRDWNVASGMVISGKAGFQLMGDWAKGEFITAKKLPGKDFLCFRTPGTQGSVTFNAD CCCCCCCCCCCCEEEECCCCCEEEECCCCCCEEEEECCCCCCEEEEECCCCCCCEEECCC QFAMFKVGADKVAAQSLLASAIMEPAFQSTFNVVKGSVPARTDVPDTAFDACGKKGMKDL CEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH AEASSKNQLLGSMGHGYAVPASIKNAFYDVITRHFNGQIDNKKAVAEMAAAAKD HHHCHHHHHHHHCCCCEECCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11481430 [H]