Click here to switch to the map view.

The map label for this gene is rbsR [H]

Identifier: 121610497

GI number: 121610497

Start: 3944457

End: 3945476

Strand: Direct

Name: rbsR [H]

Synonym: Veis_3568

Alternate gene names: 121610497

Gene position: 3944457-3945476 (Clockwise)

Preceding gene: 121610483

Following gene: 121610498

Centisome position: 70.86

GC content: 63.33

Gene sequence:

>1020_bases
ATGAGCAAGAAAACGCCAGGCTTTCGGGCCGCAACCATTCTCGACGTCGCGTCGGTCGCCAATGTCTCCAAGTCAACGGT
ATCGCTGGTATTGCGCGGCAGCGACCTGATTCCGACGGAGACATCGGACCGGGTGCGCAAGGCGGCGGCCAAAATCGGCT
ATGTCTACAACCGGCGCGCAGCAGAGCTCAGACGGCAGTCGTCCAACGCCATCGGGGTTGTCATCAGCGACCTGCGCAAC
CCCTTCTTTGCCGAAGTTCTGGTGGGACTCGAGCGCCGGCTTGCCGAAGCCGGCTACACCGTCTTCATGGCGCATACCAA
TGAAGACCTCGAAAGACAGCAACGGGTGCTGACCATCCTGAGGGAGCAAGGCATTGCCGGCATTGCCATCTGTCCGGCGC
TCGGAACGCCGATCTCGCTGCCCCGGAGCGTCAAGTCCTGGGGCGTCCCGCTGGTGGTGATGGTGCGCACGCTGGGAGGG
GGCGCGAGCTACGACTTCGCCGGCGCCGACAACAGCCTGGGCGTTCGCCAGGCCATGGACCACCTGATCGGCAAAGGGCA
CAGACGGATTGCCTTTCTGGGCGGAATCACGGGGCCGGTGCTGCAACAGCGCCTGGACGGTTACAAAGAGACGTTCACTG
CGCACCGCATCAGGTTCCACCCGGACTTGATCGTGACATCGCAGCCCACGCGCGAGGGCGGGCACGCCGCAATGGTGCGC
TTGCTCAAAGCCCGCAAGAGCGTCAAAGCAGCCGTTTGTTACAACGACCTGACCGCCTTCGGCGCGCTTTCGGCATTGGG
GGACGCCGGCCTGCGCGCCGGTGTCGACTTCGATCTCATCGGGTTTGACAACATCCTGGACACGATCCATTCCAACCCGC
CGCTGAGCACGGTCGATATCAAACCCGAGCAGATGGGGGCCGAAGCGGCAGTGCTGCTGCTGGCCCGTATCAAGGAACCC
GGCCTGAAGGTGCAGCGCTTCATTCAAGAGCCGACCCTGGTGCTCAGGCAGTCCGGATGA

Upstream 100 bases:

>100_bases
ATACGTTCAAGCCCGGCTAGACTCCGGCTAGACTGTTGGAACGGTCCAACGAAACCGGCCATAAAACCGGCACATCCAGG
CAGGAAATCACTCCCAGGCC

Downstream 100 bases:

>100_bases
CCGGCCTGCCCGCCCGTCGCGCCGGTGTCATATCGGTGTTTACCCTGGTTTTCGGATTTTGCTGTTGACGGCGGCCTATG
GGAACGTTCCAATGAATGCT

Product: periplasmic-binding protein/LacI transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 338

Protein sequence:

>339_residues
MSKKTPGFRAATILDVASVANVSKSTVSLVLRGSDLIPTETSDRVRKAAAKIGYVYNRRAAELRRQSSNAIGVVISDLRN
PFFAEVLVGLERRLAEAGYTVFMAHTNEDLERQQRVLTILREQGIAGIAICPALGTPISLPRSVKSWGVPLVVMVRTLGG
GASYDFAGADNSLGVRQAMDHLIGKGHRRIAFLGGITGPVLQQRLDGYKETFTAHRIRFHPDLIVTSQPTREGGHAAMVR
LLKARKSVKAAVCYNDLTAFGALSALGDAGLRAGVDFDLIGFDNILDTIHSNPPLSTVDIKPEQMGAEAAVLLLARIKEP
GLKVQRFIQEPTLVLRQSG

Sequences:

>Translated_339_residues
MSKKTPGFRAATILDVASVANVSKSTVSLVLRGSDLIPTETSDRVRKAAAKIGYVYNRRAAELRRQSSNAIGVVISDLRN
PFFAEVLVGLERRLAEAGYTVFMAHTNEDLERQQRVLTILREQGIAGIAICPALGTPISLPRSVKSWGVPLVVMVRTLGG
GASYDFAGADNSLGVRQAMDHLIGKGHRRIAFLGGITGPVLQQRLDGYKETFTAHRIRFHPDLIVTSQPTREGGHAAMVR
LLKARKSVKAAVCYNDLTAFGALSALGDAGLRAGVDFDLIGFDNILDTIHSNPPLSTVDIKPEQMGAEAAVLLLARIKEP
GLKVQRFIQEPTLVLRQSG
>Mature_338_residues
SKKTPGFRAATILDVASVANVSKSTVSLVLRGSDLIPTETSDRVRKAAAKIGYVYNRRAAELRRQSSNAIGVVISDLRNP
FFAEVLVGLERRLAEAGYTVFMAHTNEDLERQQRVLTILREQGIAGIAICPALGTPISLPRSVKSWGVPLVVMVRTLGGG
ASYDFAGADNSLGVRQAMDHLIGKGHRRIAFLGGITGPVLQQRLDGYKETFTAHRIRFHPDLIVTSQPTREGGHAAMVRL
LKARKSVKAAVCYNDLTAFGALSALGDAGLRAGVDFDLIGFDNILDTIHSNPPLSTVDIKPEQMGAEAAVLLLARIKEPG
LKVQRFIQEPTLVLRQSG

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787906, Length=320, Percent_Identity=33.125, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI1790369, Length=311, Percent_Identity=31.1897106109325, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI1787948, Length=336, Percent_Identity=30.6547619047619, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1790194, Length=334, Percent_Identity=31.7365269461078, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1789068, Length=300, Percent_Identity=30.6666666666667, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1789202, Length=329, Percent_Identity=28.5714285714286, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1788474, Length=290, Percent_Identity=30, Blast_Score=115, Evalue=6e-27,
Organism=Escherichia coli, GI48994940, Length=322, Percent_Identity=29.1925465838509, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787580, Length=311, Percent_Identity=27.0096463022508, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1786540, Length=302, Percent_Identity=28.1456953642384, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1790715, Length=311, Percent_Identity=26.3665594855305, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1790192, Length=285, Percent_Identity=25.9649122807018, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790689, Length=312, Percent_Identity=25, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1789456, Length=328, Percent_Identity=23.780487804878, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36599; Mature: 36468

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKTPGFRAATILDVASVANVSKSTVSLVLRGSDLIPTETSDRVRKAAAKIGYVYNRRA
CCCCCCCCHHHHHHHHHHHHHCCHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
AELRRQSSNAIGVVISDLRNPFFAEVLVGLERRLAEAGYTVFMAHTNEDLERQQRVLTIL
HHHHHHCCCCCEEEEHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH
REQGIAGIAICPALGTPISLPRSVKSWGVPLVVMVRTLGGGASYDFAGADNSLGVRQAMD
HHCCCCEEEECCCCCCCCCCCCHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
HLIGKGHRRIAFLGGITGPVLQQRLDGYKETFTAHRIRFHPDLIVTSQPTREGGHAAMVR
HHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHEEEECCCEEEECCCCCCCHHHHHHH
LLKARKSVKAAVCYNDLTAFGALSALGDAGLRAGVDFDLIGFDNILDTIHSNPPLSTVDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCEEEC
KPEQMGAEAAVLLLARIKEPGLKVQRFIQEPTLVLRQSG
CHHHHCHHHHHHHHHHHCCCCHHHHHHHHCCHHEEECCC
>Mature Secondary Structure 
SKKTPGFRAATILDVASVANVSKSTVSLVLRGSDLIPTETSDRVRKAAAKIGYVYNRRA
CCCCCCCHHHHHHHHHHHHHCCHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
AELRRQSSNAIGVVISDLRNPFFAEVLVGLERRLAEAGYTVFMAHTNEDLERQQRVLTIL
HHHHHHCCCCCEEEEHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH
REQGIAGIAICPALGTPISLPRSVKSWGVPLVVMVRTLGGGASYDFAGADNSLGVRQAMD
HHCCCCEEEECCCCCCCCCCCCHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
HLIGKGHRRIAFLGGITGPVLQQRLDGYKETFTAHRIRFHPDLIVTSQPTREGGHAAMVR
HHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHEEEECCCEEEECCCCCCCHHHHHHH
LLKARKSVKAAVCYNDLTAFGALSALGDAGLRAGVDFDLIGFDNILDTIHSNPPLSTVDI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCCCCCCEEEC
KPEQMGAEAAVLLLARIKEPGLKVQRFIQEPTLVLRQSG
CHHHHCHHHHHHHHHHHCCCCHHHHHHHHCCHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]