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The map label for this gene is rbsC [H]

Identifier: 121610363

GI number: 121610363

Start: 3802666

End: 3803694

Strand: Direct

Name: rbsC [H]

Synonym: Veis_3431

Alternate gene names: 121610363

Gene position: 3802666-3803694 (Clockwise)

Preceding gene: 121610362

Following gene: 121610364

Centisome position: 68.31

GC content: 57.82

Gene sequence:

>1029_bases
ATGGCGACAGGCACCCGCAATGCAGCGACCACAGAGGCTGGCATGACGAACCGATTGAAGCTCTCGTTTCTGAGGCTATT
GGCGCAACACCGTGAACTCAGCCCACTGATCATCCTGGTCGCGTTATGCATCGCCTTTTCAATGGGCAACGCCAGTTTTT
TCTCGGCTTTGAATTTGACGAATCTGTTGTCCATCCTCCCGGAACTGGGAATCATCGCCTTGGCGATGACTTTGCTGCTG
ACCACCGGCGAGTTCGACCTTTCCGTGGGTGCCGTATTCGCGCTGGCGCCGATTCTCCTGCTGCTGATGGTTCAGTCGGG
CGTGCCGCTTCCGGTGGCGCTTGCGCTGGCCCTTGCGGTGTCGGCTGCGATCGGCTGCCTCAACGGCTGGCTGGTCACCG
GGATGGCGATCACCTCTTTTCTCGTGACGCTCTCCATGTTGCTGATCGTTCGCGGCGTGGCGCTTTTCATCACCAACGGC
TTCCCGCAGAAACCATTGGAGGATGAATCCTGGTTGCGCTGGATGCTCTCTGGCGGCGTTGACATCGGAGAATTCACCAT
CCATGCCTCGCTGTTGTGGTTTATCGCGCTTAGCGTGATGTGCCATTACCTCTTGCGCCGATCGAAGTTGGGAAACTGGA
TTTTGGCTACGGGCAGCAACGGCCCTGCGGCAATCGCCCGTGGCGTGCCGACGGCAAAAGTCAAAACCGGCCTGTTTGCC
TTGACCTCCCTGTTTGCCGGCTTCGCCGGCATTCTGAGTGCCCTGCGAATCTCGTCCGCCTCTCCCATAGCGGGTACCGG
GTACGAACTTGAGGTCATTGCCATGGTGGTGGTCGGCGGAACGGCGCTGACGGGTGGTTTGGGTACGATCATTGGAACCG
TGATTGGTGTCATGCTGCTGCGGATCATCCGCAATGGAATCATCATGGCCGGCGTGCCAGGGCTTGCTTACAATATTTTC
GTCGGGGTCATCATCCTTGCCATGCTGATCATCAACTCCCGCCTCGAAAAACACATCAAACTGCGTTGA

Upstream 100 bases:

>100_bases
CGCTGGACCTGTACGACAAATCGAATGTCCAGACCTTCCTCAAAACCATGATGGCAGCGCAGAAAAAATAATCCGCAACT
CACTCACCGGGGTAGAACGA

Downstream 100 bases:

>100_bases
TCATATGACTACCGAACTTATCCGCCTCGAAGGCATCAACAAGTCGTTCGGCAATGTGCAGGCGTTGAAGGATATCGATC
TCAAAATCGATTCCGGCGAA

Product: inner-membrane translocator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MATGTRNAATTEAGMTNRLKLSFLRLLAQHRELSPLIILVALCIAFSMGNASFFSALNLTNLLSILPELGIIALAMTLLL
TTGEFDLSVGAVFALAPILLLLMVQSGVPLPVALALALAVSAAIGCLNGWLVTGMAITSFLVTLSMLLIVRGVALFITNG
FPQKPLEDESWLRWMLSGGVDIGEFTIHASLLWFIALSVMCHYLLRRSKLGNWILATGSNGPAAIARGVPTAKVKTGLFA
LTSLFAGFAGILSALRISSASPIAGTGYELEVIAMVVVGGTALTGGLGTIIGTVIGVMLLRIIRNGIIMAGVPGLAYNIF
VGVIILAMLIINSRLEKHIKLR

Sequences:

>Translated_342_residues
MATGTRNAATTEAGMTNRLKLSFLRLLAQHRELSPLIILVALCIAFSMGNASFFSALNLTNLLSILPELGIIALAMTLLL
TTGEFDLSVGAVFALAPILLLLMVQSGVPLPVALALALAVSAAIGCLNGWLVTGMAITSFLVTLSMLLIVRGVALFITNG
FPQKPLEDESWLRWMLSGGVDIGEFTIHASLLWFIALSVMCHYLLRRSKLGNWILATGSNGPAAIARGVPTAKVKTGLFA
LTSLFAGFAGILSALRISSASPIAGTGYELEVIAMVVVGGTALTGGLGTIIGTVIGVMLLRIIRNGIIMAGVPGLAYNIF
VGVIILAMLIINSRLEKHIKLR
>Mature_341_residues
ATGTRNAATTEAGMTNRLKLSFLRLLAQHRELSPLIILVALCIAFSMGNASFFSALNLTNLLSILPELGIIALAMTLLLT
TGEFDLSVGAVFALAPILLLLMVQSGVPLPVALALALAVSAAIGCLNGWLVTGMAITSFLVTLSMLLIVRGVALFITNGF
PQKPLEDESWLRWMLSGGVDIGEFTIHASLLWFIALSVMCHYLLRRSKLGNWILATGSNGPAAIARGVPTAKVKTGLFAL
TSLFAGFAGILSALRISSASPIAGTGYELEVIAMVVVGGTALTGGLGTIIGTVIGVMLLRIIRNGIIMAGVPGLAYNIFV
GVIILAMLIINSRLEKHIKLR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=320, Percent_Identity=34.6875, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1790191, Length=313, Percent_Identity=35.4632587859425, Blast_Score=138, Evalue=5e-34,
Organism=Escherichia coli, GI145693152, Length=336, Percent_Identity=29.1666666666667, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI87082395, Length=263, Percent_Identity=32.6996197718631, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787793, Length=323, Percent_Identity=30.6501547987616, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1790524, Length=341, Percent_Identity=27.2727272727273, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787794, Length=262, Percent_Identity=26.7175572519084, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789992, Length=136, Percent_Identity=33.0882352941176, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI145693214, Length=255, Percent_Identity=33.7254901960784, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788471, Length=268, Percent_Identity=28.7313432835821, Blast_Score=68, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35937; Mature: 35806

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGTRNAATTEAGMTNRLKLSFLRLLAQHRELSPLIILVALCIAFSMGNASFFSALNLT
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
NLLSILPELGIIALAMTLLLTTGEFDLSVGAVFALAPILLLLMVQSGVPLPVALALALAV
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
SAAIGCLNGWLVTGMAITSFLVTLSMLLIVRGVALFITNGFPQKPLEDESWLRWMLSGGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCC
DIGEFTIHASLLWFIALSVMCHYLLRRSKLGNWILATGSNGPAAIARGVPTAKVKTGLFA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCHHHHHHHHH
LTSLFAGFAGILSALRISSASPIAGTGYELEVIAMVVVGGTALTGGLGTIIGTVIGVMLL
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHH
RIIRNGIIMAGVPGLAYNIFVGVIILAMLIINSRLEKHIKLR
HHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ATGTRNAATTEAGMTNRLKLSFLRLLAQHRELSPLIILVALCIAFSMGNASFFSALNLT
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
NLLSILPELGIIALAMTLLLTTGEFDLSVGAVFALAPILLLLMVQSGVPLPVALALALAV
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
SAAIGCLNGWLVTGMAITSFLVTLSMLLIVRGVALFITNGFPQKPLEDESWLRWMLSGGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCC
DIGEFTIHASLLWFIALSVMCHYLLRRSKLGNWILATGSNGPAAIARGVPTAKVKTGLFA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCHHHHHHHHH
LTSLFAGFAGILSALRISSASPIAGTGYELEVIAMVVVGGTALTGGLGTIIGTVIGVMLL
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHH
RIIRNGIIMAGVPGLAYNIFVGVIILAMLIINSRLEKHIKLR
HHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]