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The map label for this gene is ydfH [C]

Identifier: 121609846

GI number: 121609846

Start: 3241838

End: 3242563

Strand: Direct

Name: ydfH [C]

Synonym: Veis_2899

Alternate gene names: 121609846

Gene position: 3241838-3242563 (Clockwise)

Preceding gene: 121609832

Following gene: 121609849

Centisome position: 58.24

GC content: 67.91

Gene sequence:

>726_bases
ATGGTCACGAAACCGGTCGCACGGCCCAAGGGCGGCGCGCGCAACGCCGGGCCGATAGCCGCAGCCCATCCACTGCCTGA
GCCCAAGGCCAAACTGACCGATCTGGCCTACGGGATGATCGAAGAGGCGATCGTCACGCTGCGCATCCCGCCGGGCAGCG
CCATCTCCGAGCAGGTGTTGTCGGAGATGACGGGCGTCGGCCGCACACCGATCCGCGAGGCGATACAGCGGCTGGCGCGC
GAGCATCTGATCATCGTGCTGCCCCAGCGCGGGCTGCTGGTGTCGGAGATCGACGTCAACAAGCAACTCAAACTGCTGGA
GACGCGCCGCGAAATCGAGCGGCTGATCTGCCGCAGCGCCGCGCGGCGCGCCAACGATGCCGAGCGCAAGCGCTTCGTGC
AACTGGGGCAGGAATTCCTGCGCTCGTCCGCGAAGAACGACGACGTGGCCTTCGTCCGCGCCGACCGCGCGTTCAACGAA
CTGTGCCTGGTCGCAGCGCGCAACGAGTTCGCCGAAGGCGCAATGCGCCTGCTGCACGGCTTGTCGCGGCGCTTTTGGTA
CCTGCACTACAAGCAGACGGCCGAGATGCCGGAGATGGCCCGGCTGCATGCGGCGCTGGCCACGGCGCTGGCCATGGGGG
ATGTGCAAGGCGCCGGCGAGGCCAGCGACCGGCTCATCGACAACCTGGAGAACTTCACGCGCGCGACGGTCATGCCCGGT
CGCTGA

Upstream 100 bases:

>100_bases
TGACGCGACACTGGTGGTCGGCCGTCTGCACGAGCCCCGGGCATTCCAGCCACGCCATGGCGATGGGATACGATCGATTT
TTTCTTCCGGAGTCCAAGCG

Downstream 100 bases:

>100_bases
GTGCGCCGGCCTGCCATGCCGGGCGCCGTTCAATGCGAGAGCTCCTCGAGCGATTGCCCCTTGGTCTCCACCCCCAGCAG
GGCCACGACCCCGGCCGCCA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; GntR Family Regulatory Protein; GntR-Family Transcriptional Regulator; Regulatory Protein; Regulatory Protein GntR; Transcriptional Regulator Protein; Transcriptional Regulator GntR Family Protein; Regulatory Protein GntR HTH; HTH-Type Transcriptional Regulator; GntR Domain-Containing Protein; Transcriptional Regulator GntR; Transcriptional Regulator Protein GntR Family; Transcriptional Regulator Gntr Family; FCD Domain Protein; GntR Family Transcription Regulator Protein

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MVTKPVARPKGGARNAGPIAAAHPLPEPKAKLTDLAYGMIEEAIVTLRIPPGSAISEQVLSEMTGVGRTPIREAIQRLAR
EHLIIVLPQRGLLVSEIDVNKQLKLLETRREIERLICRSAARRANDAERKRFVQLGQEFLRSSAKNDDVAFVRADRAFNE
LCLVAARNEFAEGAMRLLHGLSRRFWYLHYKQTAEMPEMARLHAALATALAMGDVQGAGEASDRLIDNLENFTRATVMPG
R

Sequences:

>Translated_241_residues
MVTKPVARPKGGARNAGPIAAAHPLPEPKAKLTDLAYGMIEEAIVTLRIPPGSAISEQVLSEMTGVGRTPIREAIQRLAR
EHLIIVLPQRGLLVSEIDVNKQLKLLETRREIERLICRSAARRANDAERKRFVQLGQEFLRSSAKNDDVAFVRADRAFNE
LCLVAARNEFAEGAMRLLHGLSRRFWYLHYKQTAEMPEMARLHAALATALAMGDVQGAGEASDRLIDNLENFTRATVMPG
R
>Mature_241_residues
MVTKPVARPKGGARNAGPIAAAHPLPEPKAKLTDLAYGMIEEAIVTLRIPPGSAISEQVLSEMTGVGRTPIREAIQRLAR
EHLIIVLPQRGLLVSEIDVNKQLKLLETRREIERLICRSAARRANDAERKRFVQLGQEFLRSSAKNDDVAFVRADRAFNE
LCLVAARNEFAEGAMRLLHGLSRRFWYLHYKQTAEMPEMARLHAALATALAMGDVQGAGEASDRLIDNLENFTRATVMPG
R

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26739; Mature: 26739

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTKPVARPKGGARNAGPIAAAHPLPEPKAKLTDLAYGMIEEAIVTLRIPPGSAISEQVL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHH
SEMTGVGRTPIREAIQRLAREHLIIVLPQRGLLVSEIDVNKQLKLLETRREIERLICRSA
HHHHCCCCCHHHHHHHHHHHCCEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
ARRANDAERKRFVQLGQEFLRSSAKNDDVAFVRADRAFNELCLVAARNEFAEGAMRLLHG
HHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSRRFWYLHYKQTAEMPEMARLHAALATALAMGDVQGAGEASDRLIDNLENFTRATVMPG
HHHHHEEEEHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
R
C
>Mature Secondary Structure
MVTKPVARPKGGARNAGPIAAAHPLPEPKAKLTDLAYGMIEEAIVTLRIPPGSAISEQVL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHH
SEMTGVGRTPIREAIQRLAREHLIIVLPQRGLLVSEIDVNKQLKLLETRREIERLICRSA
HHHHCCCCCHHHHHHHHHHHCCEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHH
ARRANDAERKRFVQLGQEFLRSSAKNDDVAFVRADRAFNELCLVAARNEFAEGAMRLLHG
HHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSRRFWYLHYKQTAEMPEMARLHAALATALAMGDVQGAGEASDRLIDNLENFTRATVMPG
HHHHHEEEEHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA