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The map label for this gene is intB [H]

Identifier: 121609718

GI number: 121609718

Start: 3118250

End: 3119515

Strand: Direct

Name: intB [H]

Synonym: Veis_2767

Alternate gene names: 121609718

Gene position: 3118250-3119515 (Clockwise)

Preceding gene: 121609716

Following gene: 121609719

Centisome position: 56.02

GC content: 58.85

Gene sequence:

>1266_bases
ATGCTCACCGATAAGCACTGCAAAAACGCACTCTGTCCCGCCGATAAGCAGCGGGTTCGCCTCTCCGATGCGGCCGGTTT
GTACCTTGAGGTGTCACCGTCCGGTTCCAAACGCTGGTTTTGGAAGTATCGCTTCGACGGCAGAGAAAAACGGCTCGCGC
TCGGCGTCTATCCAGACGTACCGCTCAAGGACGCACGAACGGCACGCGATGATGCGCGAAAGCAACACCAGCGCGGCGTC
GATCCAGTGCTTGAACGTCAGCTTGAGCGGCTGAGCAACCGTTCAGACCCTGAAGCTACCTTTGAGGTTGTTGCGCGGGA
GTTCCACACGACGAAAAAGAGGTCCTGGAGTCTGGAGTACGCCAGAAGGTGGCTGGAGCGTCTGGAAAAAGACATCTTTC
CGTGGCTTGGCAAACTGCCGCTCAAACAGATTTCTGCTCCTATGCTTCTGCAGGCCTTGCGCCGCGTCGAAGCGCGGGGC
GCGCGCGAACTGCCGCATTCGCTGTTGGAAGCCTGCGGGCAGACCTTTCGTTACGGTATCGCCACTGGCCGGTGCGACAG
GAATTCCGCAGCGGACCTTCGAGGTGCTCTGCGCCCAGTGCTGACGAAACACATGGCAGCCATCCTGGAGCCGAAGGAGG
TTCGTGAGTTGATGTTGGCCATTCGTGGCTATGACGGGCAACTGACCACGCGGGTCGCCCTTTACCTGTCGGCGCTACTG
TTCCAACGGCCGGGCAACATCCGCCAGATGGAGTGGGAAGAGGTTGATCTTGAGGCGTCCATGTGGAAAATTCCTTCGGA
GAAGATGAAGCGGAAGAAGAGCGAAAAGCTCAACGGGCGCCCGCATCTGGTTCCGCTTGCGCGTCAGGCCGTGGCCGTGC
TTCGGGATCTGCAGCCGCTGACAGGGAGAGGGCGCTACGTGTTCCCCGCGGTCGTTAGCCCCAAACGTCCCATGAGTGAA
AACACGGTGAGGGTAGCATTGCGTCGGATGGGATTCGACAACGACACGATGACTCCTCACGGCTTTCGAGCGATGGCCAG
AACGCTTCTCGTGGAGTGGCTGAATATCTCTTCAGATGTCATCGAAGTGCAATTGGCCCACCGGAAGTCTGGACCGCTCG
GCTCGGCCTACGACAGGGCCGAGTTCATGGTGCAACGCCAGACCATGATGCAGTCTTGGGCTGACTATCTTGACGCTTTG
TGTGAAGCTCACACGGGCTCGGGGGAGAACGCTTATCAACATGAGAGTACCGTAGCGGCAACATGA

Upstream 100 bases:

>100_bases
ATCAGGAGCATTCAACCGGTTTCATAAAAAAACCGGTCAATGTGGGGGAACATTTGGGGGAACGAATGGCGGTTTTTCAA
CCGTTAGGAGTTGTTCCCCC

Downstream 100 bases:

>100_bases
CGCGCCCTGCATGCAAGAATGGATTCCCTATTCAGCTTGCCCTTTGGTATGTTTTAGTCAATACTACTAATTAGCTTGTT
TGACTAATTTCTCCAAAATG

Product: phage integrase family protein

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MLTDKHCKNALCPADKQRVRLSDAAGLYLEVSPSGSKRWFWKYRFDGREKRLALGVYPDVPLKDARTARDDARKQHQRGV
DPVLERQLERLSNRSDPEATFEVVAREFHTTKKRSWSLEYARRWLERLEKDIFPWLGKLPLKQISAPMLLQALRRVEARG
ARELPHSLLEACGQTFRYGIATGRCDRNSAADLRGALRPVLTKHMAAILEPKEVRELMLAIRGYDGQLTTRVALYLSALL
FQRPGNIRQMEWEEVDLEASMWKIPSEKMKRKKSEKLNGRPHLVPLARQAVAVLRDLQPLTGRGRYVFPAVVSPKRPMSE
NTVRVALRRMGFDNDTMTPHGFRAMARTLLVEWLNISSDVIEVQLAHRKSGPLGSAYDRAEFMVQRQTMMQSWADYLDAL
CEAHTGSGENAYQHESTVAAT

Sequences:

>Translated_421_residues
MLTDKHCKNALCPADKQRVRLSDAAGLYLEVSPSGSKRWFWKYRFDGREKRLALGVYPDVPLKDARTARDDARKQHQRGV
DPVLERQLERLSNRSDPEATFEVVAREFHTTKKRSWSLEYARRWLERLEKDIFPWLGKLPLKQISAPMLLQALRRVEARG
ARELPHSLLEACGQTFRYGIATGRCDRNSAADLRGALRPVLTKHMAAILEPKEVRELMLAIRGYDGQLTTRVALYLSALL
FQRPGNIRQMEWEEVDLEASMWKIPSEKMKRKKSEKLNGRPHLVPLARQAVAVLRDLQPLTGRGRYVFPAVVSPKRPMSE
NTVRVALRRMGFDNDTMTPHGFRAMARTLLVEWLNISSDVIEVQLAHRKSGPLGSAYDRAEFMVQRQTMMQSWADYLDAL
CEAHTGSGENAYQHESTVAAT
>Mature_421_residues
MLTDKHCKNALCPADKQRVRLSDAAGLYLEVSPSGSKRWFWKYRFDGREKRLALGVYPDVPLKDARTARDDARKQHQRGV
DPVLERQLERLSNRSDPEATFEVVAREFHTTKKRSWSLEYARRWLERLEKDIFPWLGKLPLKQISAPMLLQALRRVEARG
ARELPHSLLEACGQTFRYGIATGRCDRNSAADLRGALRPVLTKHMAAILEPKEVRELMLAIRGYDGQLTTRVALYLSALL
FQRPGNIRQMEWEEVDLEASMWKIPSEKMKRKKSEKLNGRPHLVPLARQAVAVLRDLQPLTGRGRYVFPAVVSPKRPMSE
NTVRVALRRMGFDNDTMTPHGFRAMARTLLVEWLNISSDVIEVQLAHRKSGPLGSAYDRAEFMVQRQTMMQSWADYLDAL
CEAHTGSGENAYQHESTVAAT

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788690, Length=405, Percent_Identity=33.5802469135802, Blast_Score=208, Evalue=5e-55,
Organism=Escherichia coli, GI1788974, Length=409, Percent_Identity=33.9853300733496, Blast_Score=208, Evalue=5e-55,
Organism=Escherichia coli, GI145693166, Length=400, Percent_Identity=34, Blast_Score=189, Evalue=2e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 48188; Mature: 48188

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTDKHCKNALCPADKQRVRLSDAAGLYLEVSPSGSKRWFWKYRFDGREKRLALGVYPDV
CCCCHHHCCCCCCCCHHHEEEECCCCEEEEECCCCCCEEEEEEEECCCCCEEEEECCCCC
PLKDARTARDDARKQHQRGVDPVLERQLERLSNRSDPEATFEVVAREFHTTKKRSWSLEY
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHH
ARRWLERLEKDIFPWLGKLPLKQISAPMLLQALRRVEARGARELPHSLLEACGQTFRYGI
HHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
ATGRCDRNSAADLRGALRPVLTKHMAAILEPKEVRELMLAIRGYDGQLTTRVALYLSALL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
FQRPGNIRQMEWEEVDLEASMWKIPSEKMKRKKSEKLNGRPHLVPLARQAVAVLRDLQPL
HHCCCCCCCCCHHHHCCHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC
TGRGRYVFPAVVSPKRPMSENTVRVALRRMGFDNDTMTPHGFRAMARTLLVEWLNISSDV
CCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHH
IEVQLAHRKSGPLGSAYDRAEFMVQRQTMMQSWADYLDALCEAHTGSGENAYQHESTVAA
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHCC
T
C
>Mature Secondary Structure
MLTDKHCKNALCPADKQRVRLSDAAGLYLEVSPSGSKRWFWKYRFDGREKRLALGVYPDV
CCCCHHHCCCCCCCCHHHEEEECCCCEEEEECCCCCCEEEEEEEECCCCCEEEEECCCCC
PLKDARTARDDARKQHQRGVDPVLERQLERLSNRSDPEATFEVVAREFHTTKKRSWSLEY
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHH
ARRWLERLEKDIFPWLGKLPLKQISAPMLLQALRRVEARGARELPHSLLEACGQTFRYGI
HHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
ATGRCDRNSAADLRGALRPVLTKHMAAILEPKEVRELMLAIRGYDGQLTTRVALYLSALL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
FQRPGNIRQMEWEEVDLEASMWKIPSEKMKRKKSEKLNGRPHLVPLARQAVAVLRDLQPL
HHCCCCCCCCCHHHHCCHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC
TGRGRYVFPAVVSPKRPMSENTVRVALRRMGFDNDTMTPHGFRAMARTLLVEWLNISSDV
CCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHH
IEVQLAHRKSGPLGSAYDRAEFMVQRQTMMQSWADYLDALCEAHTGSGENAYQHESTVAA
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHCC
T
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]