Click here to switch to the map view.

The map label for this gene is deoR [H]

Identifier: 121609638

GI number: 121609638

Start: 3028976

End: 3029929

Strand: Direct

Name: deoR [H]

Synonym: Veis_2685

Alternate gene names: 121609638

Gene position: 3028976-3029929 (Clockwise)

Preceding gene: 121609637

Following gene: 121609639

Centisome position: 54.41

GC content: 70.23

Gene sequence:

>954_bases
GTGCGCATCGGCTCGCAAGAGCGGCGCGAGCAGATCATGGTGCAGATCGCCAAGCGCTACTACCACCTGGAGCACACCCA
GGCCGACATTGCCGACGAGATGGGCCTCACGCGCTGGCAGGTGGGGCGGCTGCTGCGCGAGGCGCGCGAGTCCGGCATCG
TGCGCGTGGACATCATTCCGCGCTCGACGCGGCGCGTCGAGCTGGAAAGCGCGCTGCAGCAGCGCTACGGCCTGCGCGAG
GCGCTGGTGCTGCCCGACACCGGCGCAGACGAAGTGACGCTGAACAGCGTCGCGCAGGAGGCCGGCCGCTACCTGGCCAG
CCTGCAGCCGAGGCCGCAACTGGTGGGCGTGTCGTGGGGGCGCACCATGAGCGCCATGGCGCGCTGGCTGCCGGTCGGCT
GGAACGAGGGCGTGCACGTGGTGCTGCTCAACGGTGCGGCCAACCTCCGCGACAACGACGGCCCGTCGCACAACGTGGCG
GAGCGCTTCGCGCAGGCCGCCAAGGGCACGGCCACGTTGCTGCCGGTGCCGGCCATCGTGGGCAGTTCGAAGACCCGCCA
GGTGCTCGAAGAAGACCCCGTCATCGGCGCCGTCATGCGCCTGGGGCGCGAGACCACCGTGGCTTGCGTGGGCATCGGGT
CGCTGTCCGAACGCTCGGTGCTGGTGCAGTCCGGGTACATGGACGCCGACTCGCTGCAGGCCCTGCTCAAGGCCGGCGCG
GTGGGCGACATCCTGGGCCGCTTCATCGACGAAGAGGGCCACATCGTCAGCCCCGATTTCGACGCCCGCGCCATCGGGTT
GTCGCCTGCGCTGCTGCGCGACAAGGCGCATGCCATCGGCGTGAGCGCTGGCAAGGCCAAGCACCGTGCCGTGAAGGCCT
GCCTGCTGGCCCGCTACATCAATGTGCTGGTGACCGACGAGGCCACGGCCAACTACCTGCTGGAGCGGCCATGA

Upstream 100 bases:

>100_bases
TGCAGCCGCTGTCCCACGAGCTCGTGCGGAGCGTCGCATGAGCCGCAAGCCAGGCAAGCCAGGCAAGGCGGCCACGGTGA
ATGCCGACGAACAACTGTCC

Downstream 100 bases:

>100_bases
ATCCAGTGAGCGTGGATGTCCCGGGCGCCCCGCCGCCGCTGTTGGACGTGCGCGGCGTGAGCAAGGTCTTTCCGCCCCGG
GTCAAGGCCCTGCACGACGC

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MRIGSQERREQIMVQIAKRYYHLEHTQADIADEMGLTRWQVGRLLREARESGIVRVDIIPRSTRRVELESALQQRYGLRE
ALVLPDTGADEVTLNSVAQEAGRYLASLQPRPQLVGVSWGRTMSAMARWLPVGWNEGVHVVLLNGAANLRDNDGPSHNVA
ERFAQAAKGTATLLPVPAIVGSSKTRQVLEEDPVIGAVMRLGRETTVACVGIGSLSERSVLVQSGYMDADSLQALLKAGA
VGDILGRFIDEEGHIVSPDFDARAIGLSPALLRDKAHAIGVSAGKAKHRAVKACLLARYINVLVTDEATANYLLERP

Sequences:

>Translated_317_residues
MRIGSQERREQIMVQIAKRYYHLEHTQADIADEMGLTRWQVGRLLREARESGIVRVDIIPRSTRRVELESALQQRYGLRE
ALVLPDTGADEVTLNSVAQEAGRYLASLQPRPQLVGVSWGRTMSAMARWLPVGWNEGVHVVLLNGAANLRDNDGPSHNVA
ERFAQAAKGTATLLPVPAIVGSSKTRQVLEEDPVIGAVMRLGRETTVACVGIGSLSERSVLVQSGYMDADSLQALLKAGA
VGDILGRFIDEEGHIVSPDFDARAIGLSPALLRDKAHAIGVSAGKAKHRAVKACLLARYINVLVTDEATANYLLERP
>Mature_317_residues
MRIGSQERREQIMVQIAKRYYHLEHTQADIADEMGLTRWQVGRLLREARESGIVRVDIIPRSTRRVELESALQQRYGLRE
ALVLPDTGADEVTLNSVAQEAGRYLASLQPRPQLVGVSWGRTMSAMARWLPVGWNEGVHVVLLNGAANLRDNDGPSHNVA
ERFAQAAKGTATLLPVPAIVGSSKTRQVLEEDPVIGAVMRLGRETTVACVGIGSLSERSVLVQSGYMDADSLQALLKAGA
VGDILGRFIDEEGHIVSPDFDARAIGLSPALLRDKAHAIGVSAGKAKHRAVKACLLARYINVLVTDEATANYLLERP

Specific function: Negative regulator of the dra-nupC-pdp operon. DeoR binds cooperatively to the operator DNA, which consists of a palindrome and a direct repeat sequence located 3' to the palindrome [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI1787791, Length=309, Percent_Identity=30.42071197411, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI87082414, Length=304, Percent_Identity=27.9605263157895, Blast_Score=123, Evalue=1e-29,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 34523; Mature: 34523

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIGSQERREQIMVQIAKRYYHLEHTQADIADEMGLTRWQVGRLLREARESGIVRVDIIP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEEC
RSTRRVELESALQQRYGLREALVLPDTGADEVTLNSVAQEAGRYLASLQPRPQLVGVSWG
CCCHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCC
RTMSAMARWLPVGWNEGVHVVLLNGAANLRDNDGPSHNVAERFAQAAKGTATLLPVPAIV
HHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECHHHH
GSSKTRQVLEEDPVIGAVMRLGRETTVACVGIGSLSERSVLVQSGYMDADSLQALLKAGA
CCHHHHHHHHHCCHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCCCHHHHHHHHHCCC
VGDILGRFIDEEGHIVSPDFDARAIGLSPALLRDKAHAIGVSAGKAKHRAVKACLLARYI
HHHHHHHHHCCCCCEECCCCCCEEECCCHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHH
NVLVTDEATANYLLERP
HHEEECCCHHCHHCCCC
>Mature Secondary Structure
MRIGSQERREQIMVQIAKRYYHLEHTQADIADEMGLTRWQVGRLLREARESGIVRVDIIP
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEEEC
RSTRRVELESALQQRYGLREALVLPDTGADEVTLNSVAQEAGRYLASLQPRPQLVGVSWG
CCCHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCC
RTMSAMARWLPVGWNEGVHVVLLNGAANLRDNDGPSHNVAERFAQAAKGTATLLPVPAIV
HHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECHHHH
GSSKTRQVLEEDPVIGAVMRLGRETTVACVGIGSLSERSVLVQSGYMDADSLQALLKAGA
CCHHHHHHHHHCCHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCCCHHHHHHHHHCCC
VGDILGRFIDEEGHIVSPDFDARAIGLSPALLRDKAHAIGVSAGKAKHRAVKACLLARYI
HHHHHHHHHCCCCCEECCCCCCEEECCCHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHH
NVLVTDEATANYLLERP
HHEEECCCHHCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8550462; 8867804; 9384377; 10074062; 10714997 [H]