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The map label for this gene is yfdE [H]

Identifier: 121609455

GI number: 121609455

Start: 2831247

End: 2832494

Strand: Direct

Name: yfdE [H]

Synonym: Veis_2499

Alternate gene names: 121609455

Gene position: 2831247-2832494 (Clockwise)

Preceding gene: 121609454

Following gene: 121609456

Centisome position: 50.86

GC content: 70.83

Gene sequence:

>1248_bases
ATGCCCGCCACTTCAACGTCCGACACCGCGCCGCGCAGCGCTGCGCCGGATATGCGCAGCGGCCCGCTGGCCGGGGTGCG
CATCCTGGACATGGCCACCGTGGTGGCCGCCCCCTTTGCCTGCACCCTGTGCGCCGACCTGGGGGCCGAGGTGGTCAAGC
TGGAACTGCCCGACGGCAGCGATGCGCTGCGCACCCTGGCGCCGGTCAAGGGCCGGCATGCGCTGTACTGGAAGGTGACC
AATCGCGGCAAGCGCGGCATCACGCTCGATGTGCGCAAGGCCGAGGGCCGCGCGCTGTTGCTGCGCCTGTTGCCGCAGTT
CGATGTGCTGGTGGAGAACTTTCGCACCGGCACCCTGGAGCGCTGGGGCCTGGACCTGGCGACGCTGCAACGCGCCAACC
CGCAGTTGACGGTGCTGCGCCTGACCGGCTTTGGCCAGACCGGGCCCTACGCCGCGCGCCCGGGCTTTGCCCGCATCTTC
GAGGCGATGAGCGGCTTTGCCCACCTGACCGGCGAGGCCGACGGTCGCCCGCAGCATATGAACTACCCGCTGGGCGATAT
GGTGGCGGGCCTGTTCGGCGCCTTCTCCATTGCCGCCGCGGTGGCCGACCGGCGCGCGCACCCGCGCGAGTGCGGCCGCG
AGATCGACCTGTCGGCCACCGAGGCCATGCTGCGCATGCTCGAACCGCTGGCGGCGGAGTTCGAGCAACTCGGCCAGGTG
CGTTGCCGCGCCGGCAGCCGCGCCACCTACACCGCGCCGTCGAACATATACCGCACCAAGGACCAGTGCTGGATCACGCT
GGTGGCCTCGTCCGAGCCGATTTTCCGGCGGCTGTGCCAGGCCATGGGCCGGCCCGCGCTGGCCAGCGATCCGCGCTTTG
GCTCCAGCCAGCAGCGCATGCTGCATATCGATGCGCTCGACGGCGCCATCGAGCGCTGGTGCGCCACGCTGGCTTGCGCT
GAACTGGCGCAGGTGCTCGAGCAGCACGAGGTGCCCTTTGGCAAGGTCTACGCCATCGATGACGTGCTCGCCGACCCGCA
TTTGCAGGCGCGCCAGGCCATCATCCGCCTGCCCGACCCGGACCTGGGCGAGTTGCCCGCGCCCTGCGCCGTGCCGCGCT
TTTCCGGCTTTGCGCCGCAGATTCCGCGCAGCGGGCCGGCGCTGGGCGAGCACAACGAGCAGGTGTTCGGCGCGCTCGGT
CTGGGCGCTGACGAGCTCGCCTGTCTGCGCTCGGCGCAGGTGATTTGA

Upstream 100 bases:

>100_bases
AGCCGCGCCGGTATCGGCGCGTTCAACATACTGAAACAACGGTGGCCGGCAAGGGCCAGCGCAGCACACACTGGCCGCAG
CCCGATCACCTGCCGCCGCC

Downstream 100 bases:

>100_bases
TCGAAATCGAGGAGCCTTCCCCCATGATCCGCGATCCCGAGGCCTTCGGGCATTTCATAGATCAGTTGCGCGCCTTCGTG
CGCAAGGAACTGGTGCCGCA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 414

Protein sequence:

>415_residues
MPATSTSDTAPRSAAPDMRSGPLAGVRILDMATVVAAPFACTLCADLGAEVVKLELPDGSDALRTLAPVKGRHALYWKVT
NRGKRGITLDVRKAEGRALLLRLLPQFDVLVENFRTGTLERWGLDLATLQRANPQLTVLRLTGFGQTGPYAARPGFARIF
EAMSGFAHLTGEADGRPQHMNYPLGDMVAGLFGAFSIAAAVADRRAHPRECGREIDLSATEAMLRMLEPLAAEFEQLGQV
RCRAGSRATYTAPSNIYRTKDQCWITLVASSEPIFRRLCQAMGRPALASDPRFGSSQQRMLHIDALDGAIERWCATLACA
ELAQVLEQHEVPFGKVYAIDDVLADPHLQARQAIIRLPDPDLGELPAPCAVPRFSGFAPQIPRSGPALGEHNEQVFGALG
LGADELACLRSAQVI

Sequences:

>Translated_415_residues
MPATSTSDTAPRSAAPDMRSGPLAGVRILDMATVVAAPFACTLCADLGAEVVKLELPDGSDALRTLAPVKGRHALYWKVT
NRGKRGITLDVRKAEGRALLLRLLPQFDVLVENFRTGTLERWGLDLATLQRANPQLTVLRLTGFGQTGPYAARPGFARIF
EAMSGFAHLTGEADGRPQHMNYPLGDMVAGLFGAFSIAAAVADRRAHPRECGREIDLSATEAMLRMLEPLAAEFEQLGQV
RCRAGSRATYTAPSNIYRTKDQCWITLVASSEPIFRRLCQAMGRPALASDPRFGSSQQRMLHIDALDGAIERWCATLACA
ELAQVLEQHEVPFGKVYAIDDVLADPHLQARQAIIRLPDPDLGELPAPCAVPRFSGFAPQIPRSGPALGEHNEQVFGALG
LGADELACLRSAQVI
>Mature_414_residues
PATSTSDTAPRSAAPDMRSGPLAGVRILDMATVVAAPFACTLCADLGAEVVKLELPDGSDALRTLAPVKGRHALYWKVTN
RGKRGITLDVRKAEGRALLLRLLPQFDVLVENFRTGTLERWGLDLATLQRANPQLTVLRLTGFGQTGPYAARPGFARIFE
AMSGFAHLTGEADGRPQHMNYPLGDMVAGLFGAFSIAAAVADRRAHPRECGREIDLSATEAMLRMLEPLAAEFEQLGQVR
CRAGSRATYTAPSNIYRTKDQCWITLVASSEPIFRRLCQAMGRPALASDPRFGSSQQRMLHIDALDGAIERWCATLACAE
LAQVLEQHEVPFGKVYAIDDVLADPHLQARQAIIRLPDPDLGELPAPCAVPRFSGFAPQIPRSGPALGEHNEQVFGALGL
GADELACLRSAQVI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=389, Percent_Identity=28.5347043701799, Blast_Score=174, Evalue=1e-43,
Organism=Homo sapiens, GI300863124, Length=415, Percent_Identity=27.4698795180723, Blast_Score=163, Evalue=3e-40,
Organism=Homo sapiens, GI300863126, Length=390, Percent_Identity=26.9230769230769, Blast_Score=144, Evalue=2e-34,
Organism=Homo sapiens, GI13376042, Length=415, Percent_Identity=24.8192771084337, Blast_Score=129, Evalue=5e-30,
Organism=Homo sapiens, GI266456254, Length=402, Percent_Identity=27.1144278606965, Blast_Score=116, Evalue=4e-26,
Organism=Homo sapiens, GI42794625, Length=402, Percent_Identity=27.1144278606965, Blast_Score=116, Evalue=4e-26,
Organism=Homo sapiens, GI266458393, Length=201, Percent_Identity=31.8407960199005, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI266458397, Length=201, Percent_Identity=31.8407960199005, Blast_Score=90, Evalue=5e-18,
Organism=Homo sapiens, GI266458395, Length=143, Percent_Identity=34.2657342657343, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI42822893, Length=209, Percent_Identity=30.1435406698565, Blast_Score=84, Evalue=3e-16,
Organism=Escherichia coli, GI87082093, Length=376, Percent_Identity=31.9148936170213, Blast_Score=201, Evalue=8e-53,
Organism=Escherichia coli, GI1788717, Length=418, Percent_Identity=27.9904306220096, Blast_Score=163, Evalue=2e-41,
Organism=Escherichia coli, GI1786222, Length=406, Percent_Identity=24.8768472906404, Blast_Score=121, Evalue=8e-29,
Organism=Caenorhabditis elegans, GI115535051, Length=323, Percent_Identity=27.5541795665635, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI32564160, Length=321, Percent_Identity=25.2336448598131, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24648431, Length=400, Percent_Identity=33.25, Blast_Score=211, Evalue=9e-55,
Organism=Drosophila melanogaster, GI24585488, Length=289, Percent_Identity=29.4117647058824, Blast_Score=90, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44827; Mature: 44696

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPATSTSDTAPRSAAPDMRSGPLAGVRILDMATVVAAPFACTLCADLGAEVVKLELPDGS
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH
DALRTLAPVKGRHALYWKVTNRGKRGITLDVRKAEGRALLLRLLPQFDVLVENFRTGTLE
HHHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHH
RWGLDLATLQRANPQLTVLRLTGFGQTGPYAARPGFARIFEAMSGFAHLTGEADGRPQHM
HHCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCEEECCCCCCCCCCC
NYPLGDMVAGLFGAFSIAAAVADRRAHPRECGREIDLSATEAMLRMLEPLAAEFEQLGQV
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RCRAGSRATYTAPSNIYRTKDQCWITLVASSEPIFRRLCQAMGRPALASDPRFGSSQQRM
HHCCCCCEEECCCCCCEECCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCEE
LHIDALDGAIERWCATLACAELAQVLEQHEVPFGKVYAIDDVLADPHLQARQAIIRLPDP
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCHHHHHHEEECCCC
DLGELPAPCAVPRFSGFAPQIPRSGPALGEHNEQVFGALGLGADELACLRSAQVI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
PATSTSDTAPRSAAPDMRSGPLAGVRILDMATVVAAPFACTLCADLGAEVVKLELPDGS
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCH
DALRTLAPVKGRHALYWKVTNRGKRGITLDVRKAEGRALLLRLLPQFDVLVENFRTGTLE
HHHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHH
RWGLDLATLQRANPQLTVLRLTGFGQTGPYAARPGFARIFEAMSGFAHLTGEADGRPQHM
HHCCCHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCEEECCCCCCCCCCC
NYPLGDMVAGLFGAFSIAAAVADRRAHPRECGREIDLSATEAMLRMLEPLAAEFEQLGQV
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
RCRAGSRATYTAPSNIYRTKDQCWITLVASSEPIFRRLCQAMGRPALASDPRFGSSQQRM
HHCCCCCEEECCCCCCEECCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCEE
LHIDALDGAIERWCATLACAELAQVLEQHEVPFGKVYAIDDVLADPHLQARQAIIRLPDP
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCHHHHHHEEECCCC
DLGELPAPCAVPRFSGFAPQIPRSGPALGEHNEQVFGALGLGADELACLRSAQVI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]