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The map label for this gene is ygbK [C]

Identifier: 121609416

GI number: 121609416

Start: 2794602

End: 2795873

Strand: Direct

Name: ygbK [C]

Synonym: Veis_2460

Alternate gene names: 121609416

Gene position: 2794602-2795873 (Clockwise)

Preceding gene: 121609412

Following gene: 121609417

Centisome position: 50.2

GC content: 70.44

Gene sequence:

>1272_bases
ATGAGTCGCTTGTCGCTGGGCTGCATCGCTGACGACTTCACCGGCGCCACCGACCTGGCGAACAACCTGGCGCGCGCCGG
CATGCGCGTGCTCCAGACCATCGGCGTGCCCGGCGCTGCGCCGGACACCGAGGCCGACGCCATCGTGGTGGCCCTCAAGT
CCCGCACCATCGCGGCCAGCGTGGCCGTTGCCCGGTCGCTGGCCGCGCTGCAATGGCTGCGGGCGCAGGGCGCGCAGCAG
ATCTATTTCAAATACTGCTCCACCTTCGACAGCACGGCCCAGGGCAATATCGGCCCGGTGACCGAGGCGCTGATGCAGGC
CCTGGGCAGCGACTTTTGCATCGCCACCCCGGCCTTCCCGGACAACCAGCGCACCGTGTTCAACGGCTACCTGTTCGTGG
GCGAGCGTCTGCTGAACGAAAGCGGCATGCAAAACCACCCGCTCACCCCGATGACCGACCCGAACCTGGTGCGCGTGCTG
CAGGCACAAACGACGCACCCCGTGGGGCTGATCGATTACCGCGTGGTCGTCCAGGGCGAGGCCGCGATCCGGGCGCGCAT
GGCCGCGCTCCGGGCCGACGGTGTGCGCATTGCCGTGGCCGATGCCGTCTGCAACGCCGACCTGCTGCGCCTGGGCGCGG
CCCTCAAGGGCATGCCGCTGGTCACCGCAGGCTCTGGCCTGGCCATCGGCCTGCCCGGCAACTTTGGCCTGGCGCCGGGC
AACGAGGCCGACCGCCTGCCCGCAGCGCAGGGCCTGCAGGCCATCGTGTCGGGCAGTTGCTCGGTGGCGACCAACCAGCA
GGTGATGGACTTCATCGCTGCGGGCAAGCCGGCGCTGGCCATCGACCCGCTGCGCATTGCCTCGGGCATGGACATGGTCG
CCGAGGCCCTGGCCTGGGCCGATGCGCATATCGCCCATGGCCCGGTGCTGCTGTACTCCAGCGCCGAGCCGTCGGCCGTG
CGCGCCATCCAGGGCCGGTTGGGCAGCGACCAGGCCGGGGCACTGGTCGAGGCCACGCTGGCCGCGATCGCGTGCGCTCT
GGTGCAGCGCGGCGTGCGCCAACTGATCGTGGCCGGCGGCGAAACCTCGGGCGCCTGCGTGCAGGCCCTGGGCATAGCGC
AGTTGCGCATTGGCGCACAGATAGACCCCGGCGTGCCCTGGTGCCATGCGCGGTCGCCCCTGGCGCCCGAGGGCCTGCAC
ATCGCGCTCAAGTCAGGTAACTTTGGCCGCAGCGACTTCTTTCGCGCGGCGTTTGCCCGATTGCCGGCATGA

Upstream 100 bases:

>100_bases
GGAGCGCGTCCATGACTTGCCGGCGTTGTGCCAACACGGGTGACGGCGCCGTGGGCCCCATCCTCGCCGGCATTGCCCTG
CCCGCAGGCCAGGAGCAGGC

Downstream 100 bases:

>100_bases
ACCAGCGCCCGGAATCACCGGACGGCGACGAACGGCAAGCCCGGGCGGAGATCTGCCGTGTGGGCCGCCGCCTGTTCGGG
CGCGGCGACGGGCACGCCAG

Product: Hrp-dependent type III effector protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 422

Protein sequence:

>423_residues
MSRLSLGCIADDFTGATDLANNLARAGMRVLQTIGVPGAAPDTEADAIVVALKSRTIAASVAVARSLAALQWLRAQGAQQ
IYFKYCSTFDSTAQGNIGPVTEALMQALGSDFCIATPAFPDNQRTVFNGYLFVGERLLNESGMQNHPLTPMTDPNLVRVL
QAQTTHPVGLIDYRVVVQGEAAIRARMAALRADGVRIAVADAVCNADLLRLGAALKGMPLVTAGSGLAIGLPGNFGLAPG
NEADRLPAAQGLQAIVSGSCSVATNQQVMDFIAAGKPALAIDPLRIASGMDMVAEALAWADAHIAHGPVLLYSSAEPSAV
RAIQGRLGSDQAGALVEATLAAIACALVQRGVRQLIVAGGETSGACVQALGIAQLRIGAQIDPGVPWCHARSPLAPEGLH
IALKSGNFGRSDFFRAAFARLPA

Sequences:

>Translated_423_residues
MSRLSLGCIADDFTGATDLANNLARAGMRVLQTIGVPGAAPDTEADAIVVALKSRTIAASVAVARSLAALQWLRAQGAQQ
IYFKYCSTFDSTAQGNIGPVTEALMQALGSDFCIATPAFPDNQRTVFNGYLFVGERLLNESGMQNHPLTPMTDPNLVRVL
QAQTTHPVGLIDYRVVVQGEAAIRARMAALRADGVRIAVADAVCNADLLRLGAALKGMPLVTAGSGLAIGLPGNFGLAPG
NEADRLPAAQGLQAIVSGSCSVATNQQVMDFIAAGKPALAIDPLRIASGMDMVAEALAWADAHIAHGPVLLYSSAEPSAV
RAIQGRLGSDQAGALVEATLAAIACALVQRGVRQLIVAGGETSGACVQALGIAQLRIGAQIDPGVPWCHARSPLAPEGLH
IALKSGNFGRSDFFRAAFARLPA
>Mature_422_residues
SRLSLGCIADDFTGATDLANNLARAGMRVLQTIGVPGAAPDTEADAIVVALKSRTIAASVAVARSLAALQWLRAQGAQQI
YFKYCSTFDSTAQGNIGPVTEALMQALGSDFCIATPAFPDNQRTVFNGYLFVGERLLNESGMQNHPLTPMTDPNLVRVLQ
AQTTHPVGLIDYRVVVQGEAAIRARMAALRADGVRIAVADAVCNADLLRLGAALKGMPLVTAGSGLAIGLPGNFGLAPGN
EADRLPAAQGLQAIVSGSCSVATNQQVMDFIAAGKPALAIDPLRIASGMDMVAEALAWADAHIAHGPVLLYSSAEPSAVR
AIQGRLGSDQAGALVEATLAAIACALVQRGVRQLIVAGGETSGACVQALGIAQLRIGAQIDPGVPWCHARSPLAPEGLHI
ALKSGNFGRSDFFRAAFARLPA

Specific function: Unknown

COG id: COG3395

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygbK [H]

Homologues:

Organism=Escherichia coli, GI1789093, Length=385, Percent_Identity=45.4545454545455, Blast_Score=298, Evalue=4e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010737 [H]

Pfam domain/function: PF07005 DUF1537 [H]

EC number: NA

Molecular weight: Translated: 43688; Mature: 43557

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRLSLGCIADDFTGATDLANNLARAGMRVLQTIGVPGAAPDTEADAIVVALKSRTIAAS
CCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHH
VAVARSLAALQWLRAQGAQQIYFKYCSTFDSTAQGNIGPVTEALMQALGSDFCIATPAFP
HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCCC
DNQRTVFNGYLFVGERLLNESGMQNHPLTPMTDPNLVRVLQAQTTHPVGLIDYRVVVQGE
CCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEEECH
AAIRARMAALRADGVRIAVADAVCNADLLRLGAALKGMPLVTAGSGLAIGLPGNFGLAPG
HHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCCCCCCCC
NEADRLPAAQGLQAIVSGSCSVATNQQVMDFIAAGKPALAIDPLRIASGMDMVAEALAWA
CCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEECHHHHHCCHHHHHHHHHHH
DAHIAHGPVLLYSSAEPSAVRAIQGRLGSDQAGALVEATLAAIACALVQRGVRQLIVAGG
HHHHCCCCEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECC
ETSGACVQALGIAQLRIGAQIDPGVPWCHARSPLAPEGLHIALKSGNFGRSDFFRAAFAR
CCCCHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH
LPA
CCC
>Mature Secondary Structure 
SRLSLGCIADDFTGATDLANNLARAGMRVLQTIGVPGAAPDTEADAIVVALKSRTIAAS
CCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHH
VAVARSLAALQWLRAQGAQQIYFKYCSTFDSTAQGNIGPVTEALMQALGSDFCIATPAFP
HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCCC
DNQRTVFNGYLFVGERLLNESGMQNHPLTPMTDPNLVRVLQAQTTHPVGLIDYRVVVQGE
CCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEEECH
AAIRARMAALRADGVRIAVADAVCNADLLRLGAALKGMPLVTAGSGLAIGLPGNFGLAPG
HHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCCCCCCCC
NEADRLPAAQGLQAIVSGSCSVATNQQVMDFIAAGKPALAIDPLRIASGMDMVAEALAWA
CCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEECHHHHHCCHHHHHHHHHHH
DAHIAHGPVLLYSSAEPSAVRAIQGRLGSDQAGALVEATLAAIACALVQRGVRQLIVAGG
HHHHCCCCEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEECC
ETSGACVQALGIAQLRIGAQIDPGVPWCHARSPLAPEGLHIALKSGNFGRSDFFRAAFAR
CCCCHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHH
LPA
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]