| Definition | Acidovorax citrulli AAC00-1 chromosome, complete genome. |
|---|---|
| Accession | NC_008752 |
| Length | 5,352,772 |
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The map label for this gene is 120613233
Identifier: 120613233
GI number: 120613233
Start: 5118333
End: 5118905
Strand: Direct
Name: 120613233
Synonym: Aave_4600
Alternate gene names: NA
Gene position: 5118333-5118905 (Clockwise)
Preceding gene: 120613232
Following gene: 120613234
Centisome position: 95.62
GC content: 74.35
Gene sequence:
>573_bases ATGCCACATGCCATCCGCCCCGCGGCGTGGAGCGGGCGGGCCGCCGCCTGGCCGGCAGGACCGCTGCTGAGCCTGGCCAC GCTGCTGCCGCTGTCCGCGGTACCCGCCACGATCCCGACCACGGCCACCCTGTCGGTGAACGCCGCCATCGTGCGCGGCT GCCTGGTGTCGGGCGCTCCCGGGCAGGTCACGGGCGTGAATTTCGGCACGATCGATTTCGGCACGCACTCCGCCGTCCGC ACGGGCAGCGAGATGCGGCTCGCCGGCTCCGGTGCCGGCGGGCAGGCGTTGATCCAGTGCACCCCGGGCACGGCCGTGCA GGTGGCGGCGGATGCCGGGCAGAACGCGCAGGGCAGCCAGCGCAGGCTCTCCAACAACGCGGGCGCCTATGTGCCCTACG CGCTGGCACTGGCCACGGGCCCCGCCACGGCGCTCGTCCCGAACGTGCCCGCCGGCCTCACGCTCGGCGCCAGCGCCGCC GCCCTGCCGGTCCAGGGCACGGCCACGTTCCCAGGGTTCGGCCTGCCGGCGGGCGTCTATACCGATACGGTACAGGTGAC GCTGTCATGGTAG
Upstream 100 bases:
>100_bases GTGGCGCTGCCCGCGGGCCTCTACACCGACCAGCTGCAGGTCACGCTGACCTTCTGAATCAGGGAGCGCCGGAGCCTCCG GCGGCGAGGGAGATCTTTCG
Downstream 100 bases:
>100_bases GGGCCTGTCCGCCTTCCCTCCTGCGCTGCCCGGACCGCAGGGCCTGCCTGCGGAGGATGGCCACGGCGCTGGCATGGGCG CTGCTGCCGGCCCTGCCGGG
Product: spore coat protein U domain-contain protein
Products: NA
Alternate protein names: Spore Coat U Domain-Containing Protein
Number of amino acids: Translated: 190; Mature: 189
Protein sequence:
>190_residues MPHAIRPAAWSGRAAAWPAGPLLSLATLLPLSAVPATIPTTATLSVNAAIVRGCLVSGAPGQVTGVNFGTIDFGTHSAVR TGSEMRLAGSGAGGQALIQCTPGTAVQVAADAGQNAQGSQRRLSNNAGAYVPYALALATGPATALVPNVPAGLTLGASAA ALPVQGTATFPGFGLPAGVYTDTVQVTLSW
Sequences:
>Translated_190_residues MPHAIRPAAWSGRAAAWPAGPLLSLATLLPLSAVPATIPTTATLSVNAAIVRGCLVSGAPGQVTGVNFGTIDFGTHSAVR TGSEMRLAGSGAGGQALIQCTPGTAVQVAADAGQNAQGSQRRLSNNAGAYVPYALALATGPATALVPNVPAGLTLGASAA ALPVQGTATFPGFGLPAGVYTDTVQVTLSW >Mature_189_residues PHAIRPAAWSGRAAAWPAGPLLSLATLLPLSAVPATIPTTATLSVNAAIVRGCLVSGAPGQVTGVNFGTIDFGTHSAVRT GSEMRLAGSGAGGQALIQCTPGTAVQVAADAGQNAQGSQRRLSNNAGAYVPYALALATGPATALVPNVPAGLTLGASAAA LPVQGTATFPGFGLPAGVYTDTVQVTLSW
Specific function: Unknown
COG id: COG5430
COG function: function code S; Uncharacterized secreted protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18624; Mature: 18493
Theoretical pI: Translated: 9.31; Mature: 9.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHAIRPAAWSGRAAAWPAGPLLSLATLLPLSAVPATIPTTATLSVNAAIVRGCLVSGAP CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHCCCCC GQVTGVNFGTIDFGTHSAVRTGSEMRLAGSGAGGQALIQCTPGTAVQVAADAGQNAQGSQ CCEECCEECEEECCCCHHHHCCCEEEEEECCCCCCEEEEECCCCEEEEEECCCCCCCCCH RRLSNNAGAYVPYALALATGPATALVPNVPAGLTLGASAAALPVQGTATFPGFGLPAGVY HHHCCCCCCCCEEEEEEECCCCCEECCCCCCCEEECCCCEEEECCCCCCCCCCCCCCCEE TDTVQVTLSW EEEEEEEEEC >Mature Secondary Structure PHAIRPAAWSGRAAAWPAGPLLSLATLLPLSAVPATIPTTATLSVNAAIVRGCLVSGAP CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHCCCCC GQVTGVNFGTIDFGTHSAVRTGSEMRLAGSGAGGQALIQCTPGTAVQVAADAGQNAQGSQ CCEECCEECEEECCCCHHHHCCCEEEEEECCCCCCEEEEECCCCEEEEEECCCCCCCCCH RRLSNNAGAYVPYALALATGPATALVPNVPAGLTLGASAAALPVQGTATFPGFGLPAGVY HHHCCCCCCCCEEEEEEECCCCCEECCCCCCCEEECCCCEEEECCCCCCCCCCCCCCCEE TDTVQVTLSW EEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA