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The map label for this gene is 120613227

Identifier: 120613227

GI number: 120613227

Start: 5112683

End: 5113987

Strand: Direct

Name: 120613227

Synonym: Aave_4594

Alternate gene names: NA

Gene position: 5112683-5113987 (Clockwise)

Preceding gene: 120613226

Following gene: 120613228

Centisome position: 95.51

GC content: 72.26

Gene sequence:

>1305_bases
GTGTCCACCCTGTCCAAGCTCGCCATCCTCGCAGACGCCGCCAAGTACGACGCATCGTGCGCCTCCAGCGGCACGTCGGC
ACGCAACTCCGTGGGCGGCAAGGGCATCGGATCGACCGAGGGCATGGGCATCTGCCACAGCTATGCGCCCGATGGGCGCT
GCATCTCGCTGCTCAAGATCCTGCTCACCAATTACTGCCAGTACGACTGCCTGTATTGCGTGAACCGCGTCAGCAGCAAC
GTGCCCCGCGCCCGCTTCTCGGTGCAGGAGGTGGTGGATCTCACGCTGGACTTCTACCGGCGCAACTGCATCGAAGGGCT
GTTCCTCTCCAGCGGCATCATCCAGAACCCCGACTACACCATGGAGCGGGTGGTCGAGGTGGCCCGGGCACTGCGCGAGG
ACCACGACTTCCGCGGCTACATCCACCTCAAGACGATTCCGGACGCCGCCCCCGAGCTGCTGGAGCGCGCGGGCCGCTAC
GCCGACCGGCTGAGCATCAACATCGAGCTGCCCACCTCGCAGGGCCTGGCAGCGCTGGCGCCCGAGAAGGACGGCGCCGC
CATCCAGCGCTCCATGGGCCGCATGGCGGTGCACATCGACGAAGCACGGCAGGCGCGGGCGCAGCAGCAGGGGCGGCGCG
CCGGCACGGAGCGCATCGTCTCCCTGCCCGGCCGCGCCCGGCGGGCCGAAGCGCCGCGCTTCGCGCCCGGCGGGCAGAGC
ACGCAGATGATCGTGGGCGCGGACGGCGCGGACGACCGCACCATCCTGGCCACGAGCGCACGGCTCTACGGAGGCTTCGG
CCTGCGCCGCGTGTACTACTCCGCCTTCAGCCCCATTCCCGACGCCCCGCGCGCCCTGCCCCTGGCCGCGCCGCCGCTGG
TGCGCGAGCACCGGCTCTACCAGGCCGACTGGCTCATGCGGTTCTACGGGTTCACCCACGACGAGATCGTCCCGCCCGCG
CCGCGCGGCGACGGCACGGGCGGGATGCTGTCGCTGGACATGGATCCCAAGCTCGCCTGGGCCGTGGCGCACCCGGAGCA
TTTCCCCGTGGACCTGAACACCGCGGCGCGCGAGCGGCTGCTGCGCGTGCCCGGCCTGGGGGTGCGCACGGTGGAGCGCC
TGCTGGCCGCCCGCCGCGTGCGCCGGCTGGGCCATGCCGACCTGGGCCGGCTGCACGTGCCCCTGTCCCGCGTGCTGCCC
TTCGTCTGCGTGGCAGACCATCGCCCCGCCGAGCGGCTGCGCGACCCGGCACGCCTGCGCGCCTGGCTGTCGCCGCAGCC
GTCGCAGGCCCGCCTGTTCGCATGA

Upstream 100 bases:

>100_bases
ACGCTCCGGCCCCGCGTGGCACCGGAGCCCATCGGAGCAAAGGCATGCGCTCCGCATGGGCTTTGGGCATGCCGGGCCCA
GGACACTGTAAATTAATACA

Downstream 100 bases:

>100_bases
CCGCCGTCGGCACCGCGCACCGCACCGTCGTCCTGCAGCATCCTGCCGACTGGCAGGGGTTCCGGGCGGGCGCACGCGCC
TGCCTGCATGCCGGGATGGC

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: Radical SAM Domain Protein; Radical SAM Family Protein; Elongator /MiaB/NifB; Radical Sam Domain Protein; Radical SAM; Radical SAM Superfamily Protein; Biotin Synthase Related Domain-Containing Protein; Biotin Synthase Related Domain Containing Protein; Elongator Protein; Radical SAM Methylase Protein; Helix-Hairpin-Helix Motif; Radical SAM Protein

Number of amino acids: Translated: 434; Mature: 433

Protein sequence:

>434_residues
MSTLSKLAILADAAKYDASCASSGTSARNSVGGKGIGSTEGMGICHSYAPDGRCISLLKILLTNYCQYDCLYCVNRVSSN
VPRARFSVQEVVDLTLDFYRRNCIEGLFLSSGIIQNPDYTMERVVEVARALREDHDFRGYIHLKTIPDAAPELLERAGRY
ADRLSINIELPTSQGLAALAPEKDGAAIQRSMGRMAVHIDEARQARAQQQGRRAGTERIVSLPGRARRAEAPRFAPGGQS
TQMIVGADGADDRTILATSARLYGGFGLRRVYYSAFSPIPDAPRALPLAAPPLVREHRLYQADWLMRFYGFTHDEIVPPA
PRGDGTGGMLSLDMDPKLAWAVAHPEHFPVDLNTAARERLLRVPGLGVRTVERLLAARRVRRLGHADLGRLHVPLSRVLP
FVCVADHRPAERLRDPARLRAWLSPQPSQARLFA

Sequences:

>Translated_434_residues
MSTLSKLAILADAAKYDASCASSGTSARNSVGGKGIGSTEGMGICHSYAPDGRCISLLKILLTNYCQYDCLYCVNRVSSN
VPRARFSVQEVVDLTLDFYRRNCIEGLFLSSGIIQNPDYTMERVVEVARALREDHDFRGYIHLKTIPDAAPELLERAGRY
ADRLSINIELPTSQGLAALAPEKDGAAIQRSMGRMAVHIDEARQARAQQQGRRAGTERIVSLPGRARRAEAPRFAPGGQS
TQMIVGADGADDRTILATSARLYGGFGLRRVYYSAFSPIPDAPRALPLAAPPLVREHRLYQADWLMRFYGFTHDEIVPPA
PRGDGTGGMLSLDMDPKLAWAVAHPEHFPVDLNTAARERLLRVPGLGVRTVERLLAARRVRRLGHADLGRLHVPLSRVLP
FVCVADHRPAERLRDPARLRAWLSPQPSQARLFA
>Mature_433_residues
STLSKLAILADAAKYDASCASSGTSARNSVGGKGIGSTEGMGICHSYAPDGRCISLLKILLTNYCQYDCLYCVNRVSSNV
PRARFSVQEVVDLTLDFYRRNCIEGLFLSSGIIQNPDYTMERVVEVARALREDHDFRGYIHLKTIPDAAPELLERAGRYA
DRLSINIELPTSQGLAALAPEKDGAAIQRSMGRMAVHIDEARQARAQQQGRRAGTERIVSLPGRARRAEAPRFAPGGQST
QMIVGADGADDRTILATSARLYGGFGLRRVYYSAFSPIPDAPRALPLAAPPLVREHRLYQADWLMRFYGFTHDEIVPPAP
RGDGTGGMLSLDMDPKLAWAVAHPEHFPVDLNTAARERLLRVPGLGVRTVERLLAARRVRRLGHADLGRLHVPLSRVLPF
VCVADHRPAERLRDPARLRAWLSPQPSQARLFA

Specific function: Unknown

COG id: COG4277

COG function: function code R; Predicted DNA-binding protein with the Helix-hairpin-helix motif

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47766; Mature: 47635

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLSKLAILADAAKYDASCASSGTSARNSVGGKGIGSTEGMGICHSYAPDGRCISLLKI
CCHHHHHHHHHHHHHHCCHHHCCCCCHHHCCCCCCCCCCCCCCEEECCCCCHHHHHHHHH
LLTNYCQYDCLYCVNRVSSNVPRARFSVQEVVDLTLDFYRRNCIEGLFLSSGIIQNPDYT
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
MERVVEVARALREDHDFRGYIHLKTIPDAAPELLERAGRYADRLSINIELPTSQGLAALA
HHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHCCHHHEEEEEEECCCCCCCEEEC
PEKDGAAIQRSMGRMAVHIDEARQARAQQQGRRAGTERIVSLPGRARRAEAPRFAPGGQS
CCCCCHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCC
TQMIVGADGADDRTILATSARLYGGFGLRRVYYSAFSPIPDAPRALPLAAPPLVREHRLY
CEEEEECCCCCCCEEEEECHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
QADWLMRFYGFTHDEIVPPAPRGDGTGGMLSLDMDPKLAWAVAHPEHFPVDLNTAARERL
HHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCHHHHHHH
LRVPGLGVRTVERLLAARRVRRLGHADLGRLHVPLSRVLPFVCVADHRPAERLRDPARLR
HHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHCCEEEECCCCCHHHHCCHHHHH
AWLSPQPSQARLFA
HHCCCCCCCCCCCC
>Mature Secondary Structure 
STLSKLAILADAAKYDASCASSGTSARNSVGGKGIGSTEGMGICHSYAPDGRCISLLKI
CHHHHHHHHHHHHHHCCHHHCCCCCHHHCCCCCCCCCCCCCCEEECCCCCHHHHHHHHH
LLTNYCQYDCLYCVNRVSSNVPRARFSVQEVVDLTLDFYRRNCIEGLFLSSGIIQNPDYT
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHH
MERVVEVARALREDHDFRGYIHLKTIPDAAPELLERAGRYADRLSINIELPTSQGLAALA
HHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHCCHHHEEEEEEECCCCCCCEEEC
PEKDGAAIQRSMGRMAVHIDEARQARAQQQGRRAGTERIVSLPGRARRAEAPRFAPGGQS
CCCCCHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCC
TQMIVGADGADDRTILATSARLYGGFGLRRVYYSAFSPIPDAPRALPLAAPPLVREHRLY
CEEEEECCCCCCCEEEEECHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH
QADWLMRFYGFTHDEIVPPAPRGDGTGGMLSLDMDPKLAWAVAHPEHFPVDLNTAARERL
HHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCCCHHHHHHH
LRVPGLGVRTVERLLAARRVRRLGHADLGRLHVPLSRVLPFVCVADHRPAERLRDPARLR
HHCCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHCCEEEECCCCCHHHHCCHHHHH
AWLSPQPSQARLFA
HHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA