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The map label for this gene is sodC [H]

Identifier: 120613156

GI number: 120613156

Start: 5024794

End: 5026326

Strand: Direct

Name: sodC [H]

Synonym: Aave_4523

Alternate gene names: 120613156

Gene position: 5024794-5026326 (Clockwise)

Preceding gene: 120613155

Following gene: 120613157

Centisome position: 93.87

GC content: 72.15

Gene sequence:

>1533_bases
ATGAACCACTCCTTCCGACTTTCCTCCCTCGCTGGTGCCTGCGCCACGGGCACCGCCGCCCTGCTGCTCGGAGGCTGCGC
CGCCCTGCAGAACTACGACATGCCCCCCGCCCGGGGCGCCATCGGCATTCCGGGCAGCGCCGGCACGGCGACCGACATGG
GCGCGCCCGACGCGACCTCGGCCGTCGTCCTGCTGAAAACCGCCGCGGGCGCCCCGGCCGGCCGCGCCATGCTCACGGAG
TTGCCGCAGGGCGGCGGCGTGGAGATCGCGATCGACGTGCAGGACATGGCCCCGGGCCTGCACGGCTTCCACATCCACGC
GAACGGCGAATGCGCCCCCGGGCCCGATGCGGCCACGGGCCGCGTGGTCGATTTCGGCGCCGCGGGCGGCCATTTCGATC
CCTACATGACGCGCAACCACGGCCGCCCGGCCCAGTCGCCGCACGAGGCGCATGCGGGCGAGGCGCCCAACATCCAGGTG
GGCGCAGACGGCAAGGGATCGCTGCGCTTCACCAACCCCCACGTGACCCTGCTGGCGGGCAAGACCTCGGTGCTCGGCCG
CACCCTCGTTGTCCACGAGAAGCAGGACGACTACGCCAGCGATCCGGCCGGCAATTCCGGCGGCCGCCTGGCCTGCGGCC
TGGTCGAGCCGGCCGCGCCCAGCATGGTGCAGGGCCGCGCCACCATCGAAGGCGCCAACGCCTATCCCGAAGGCATCGCG
GTCGATCCGCGCACGGGCATCGCCTACGTCGGCTCCAGCACCGAAGGCCACCTCTACCGCATCGCCCGGGGCACGCAGAA
GGCCGAGCGCTTCCAGCTCGGCGGCTCGCCGGGCCGCCAGGCCGCCCTCGGCATGAAGGTGGACGGCAATGGCCGCCTGT
GGGTGGCGGGCGGCGCCACCGACACCGTGGCCGTGGTGGACCTGCAGAGCGCCGCGACGCTCGCCGTCATCGAAGGCCCG
AAGGATGGACAGGCGTTCCTCAACGACATCGCGCTCGCGCCGCAGCATGCTTACGTCACCGACTCCTTCCGGCCCGTGCT
CTGGCGCATCGCCACGGCCCCCGGTGCGCCCGCCGCGCTGGAACCGTGGCTCGACCTGCGCAACACGCCGATCCGCTACC
GGCCGAACCAGATGAACCTGAATGGCATCGTGGCATCCGATGATGGCCGCCGCCTGCTCGCCGTGCAGCATGCGACAGGC
CAGCTCTGGCGCATCGACACCGCCACGCGCGACGTGGCCGAGGTCCGCCTCGAAGGCGGCGACCTGCGCGACGGCGACGG
GCTCGTGCTCGCAGGCCCGGGTGATCTCTACGTCATGCGCAATGCGAACAACGAGCTGGTGCGCGTCGCCCTCGCCGGCG
ACTGGAGCAGCGGCCGCATCGTGCAGCGCCTGCGCGATCCGCGCCTGAAGTACCCGACCACGGCCGCCCTGCACGGCTCC
GCGCTGCTGGTGGTGAACGGGCAGCTCGACAAACAGAAGGCACCGCCCCCTCTGCTGCCTTTCGATGTGTTGCGCATCGC
CCTGCCGCACTGA

Upstream 100 bases:

>100_bases
GCTGCTCGCCGAGGACCAGAACGGCGTGATCTACCGCATCAGCCACGGCAGTCGCTGACCGGCGGCCCTCGCCCCTCCTC
CACATTCCCTGCGTGCCGCC

Downstream 100 bases:

>100_bases
AGCCTGCCGGGCGACGGGCCAGGTCGCACGCACGTGCTGCCCCGGGCCCGGCAAGGCCGGAGGCGGCTTACAGCGCCAAA
GCTGTAAAACCAATTTACCG

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 510; Mature: 510

Protein sequence:

>510_residues
MNHSFRLSSLAGACATGTAALLLGGCAALQNYDMPPARGAIGIPGSAGTATDMGAPDATSAVVLLKTAAGAPAGRAMLTE
LPQGGGVEIAIDVQDMAPGLHGFHIHANGECAPGPDAATGRVVDFGAAGGHFDPYMTRNHGRPAQSPHEAHAGEAPNIQV
GADGKGSLRFTNPHVTLLAGKTSVLGRTLVVHEKQDDYASDPAGNSGGRLACGLVEPAAPSMVQGRATIEGANAYPEGIA
VDPRTGIAYVGSSTEGHLYRIARGTQKAERFQLGGSPGRQAALGMKVDGNGRLWVAGGATDTVAVVDLQSAATLAVIEGP
KDGQAFLNDIALAPQHAYVTDSFRPVLWRIATAPGAPAALEPWLDLRNTPIRYRPNQMNLNGIVASDDGRRLLAVQHATG
QLWRIDTATRDVAEVRLEGGDLRDGDGLVLAGPGDLYVMRNANNELVRVALAGDWSSGRIVQRLRDPRLKYPTTAALHGS
ALLVVNGQLDKQKAPPPLLPFDVLRIALPH

Sequences:

>Translated_510_residues
MNHSFRLSSLAGACATGTAALLLGGCAALQNYDMPPARGAIGIPGSAGTATDMGAPDATSAVVLLKTAAGAPAGRAMLTE
LPQGGGVEIAIDVQDMAPGLHGFHIHANGECAPGPDAATGRVVDFGAAGGHFDPYMTRNHGRPAQSPHEAHAGEAPNIQV
GADGKGSLRFTNPHVTLLAGKTSVLGRTLVVHEKQDDYASDPAGNSGGRLACGLVEPAAPSMVQGRATIEGANAYPEGIA
VDPRTGIAYVGSSTEGHLYRIARGTQKAERFQLGGSPGRQAALGMKVDGNGRLWVAGGATDTVAVVDLQSAATLAVIEGP
KDGQAFLNDIALAPQHAYVTDSFRPVLWRIATAPGAPAALEPWLDLRNTPIRYRPNQMNLNGIVASDDGRRLLAVQHATG
QLWRIDTATRDVAEVRLEGGDLRDGDGLVLAGPGDLYVMRNANNELVRVALAGDWSSGRIVQRLRDPRLKYPTTAALHGS
ALLVVNGQLDKQKAPPPLLPFDVLRIALPH
>Mature_510_residues
MNHSFRLSSLAGACATGTAALLLGGCAALQNYDMPPARGAIGIPGSAGTATDMGAPDATSAVVLLKTAAGAPAGRAMLTE
LPQGGGVEIAIDVQDMAPGLHGFHIHANGECAPGPDAATGRVVDFGAAGGHFDPYMTRNHGRPAQSPHEAHAGEAPNIQV
GADGKGSLRFTNPHVTLLAGKTSVLGRTLVVHEKQDDYASDPAGNSGGRLACGLVEPAAPSMVQGRATIEGANAYPEGIA
VDPRTGIAYVGSSTEGHLYRIARGTQKAERFQLGGSPGRQAALGMKVDGNGRLWVAGGATDTVAVVDLQSAATLAVIEGP
KDGQAFLNDIALAPQHAYVTDSFRPVLWRIATAPGAPAALEPWLDLRNTPIRYRPNQMNLNGIVASDDGRRLLAVQHATG
QLWRIDTATRDVAEVRLEGGDLRDGDGLVLAGPGDLYVMRNANNELVRVALAGDWSSGRIVQRLRDPRLKYPTTAALHGS
ALLVVNGQLDKQKAPPPLLPFDVLRIALPH

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI4507149, Length=164, Percent_Identity=34.1463414634146, Blast_Score=77, Evalue=3e-14,
Organism=Escherichia coli, GI1787934, Length=149, Percent_Identity=32.8859060402685, Blast_Score=71, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71981876, Length=156, Percent_Identity=34.6153846153846, Blast_Score=83, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI71981879, Length=156, Percent_Identity=34.6153846153846, Blast_Score=82, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17537871, Length=138, Percent_Identity=34.7826086956522, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17554806, Length=129, Percent_Identity=36.4341085271318, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI116007680, Length=149, Percent_Identity=32.2147651006711, Blast_Score=73, Evalue=5e-13,
Organism=Drosophila melanogaster, GI85725006, Length=149, Percent_Identity=32.2147651006711, Blast_Score=72, Evalue=8e-13,
Organism=Drosophila melanogaster, GI45551081, Length=149, Percent_Identity=32.2147651006711, Blast_Score=72, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24652737, Length=149, Percent_Identity=32.2147651006711, Blast_Score=72, Evalue=9e-13,
Organism=Drosophila melanogaster, GI281363087, Length=130, Percent_Identity=32.3076923076923, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24652342, Length=130, Percent_Identity=32.3076923076923, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI17136496, Length=152, Percent_Identity=31.5789473684211, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 52916; Mature: 52916

Theoretical pI: Translated: 6.93; Mature: 6.93

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHSFRLSSLAGACATGTAALLLGGCAALQNYDMPPARGAIGIPGSAGTATDMGAPDATS
CCCCEEHHHHCCCHHCCHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCCC
AVVLLKTAAGAPAGRAMLTELPQGGGVEIAIDVQDMAPGLHGFHIHANGECAPGPDAATG
EEEEEEECCCCCCCCHHHHHCCCCCCEEEEEEHHHHCCCCEEEEEEECCCCCCCCCCCCC
RVVDFGAAGGHFDPYMTRNHGRPAQSPHEAHAGEAPNIQVGADGKGSLRFTNPHVTLLAG
CEEEECCCCCCCCCCEECCCCCCCCCCCHHCCCCCCEEEECCCCCCCEEEECCCEEEEEC
KTSVLGRTLVVHEKQDDYASDPAGNSGGRLACGLVEPAAPSMVQGRATIEGANAYPEGIA
CHHHCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCEE
VDPRTGIAYVGSSTEGHLYRIARGTQKAERFQLGGSPGRQAALGMKVDGNGRLWVAGGAT
ECCCCCEEEECCCCCCCEEEEECCCCHHHHEECCCCCCCCEEEEEEECCCCEEEEECCCC
DTVAVVDLQSAATLAVIEGPKDGQAFLNDIALAPQHAYVTDSFRPVLWRIATAPGAPAAL
CEEEEEEECCCEEEEEEECCCCCHHHHHHHHCCCCCEEECCCCCEEEEEEECCCCCCCCC
EPWLDLRNTPIRYRPNQMNLNGIVASDDGRRLLAVQHATGQLWRIDTATRDVAEVRLEGG
CCHHHCCCCCEEECCCEECCEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEEECCC
DLRDGDGLVLAGPGDLYVMRNANNELVRVALAGDWSSGRIVQRLRDPRLKYPTTAALHGS
CCCCCCCEEEECCCCEEEEECCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCEEEECCC
ALLVVNGQLDKQKAPPPLLPFDVLRIALPH
EEEEECCCCCCCCCCCCCCCHHHHHEECCC
>Mature Secondary Structure
MNHSFRLSSLAGACATGTAALLLGGCAALQNYDMPPARGAIGIPGSAGTATDMGAPDATS
CCCCEEHHHHCCCHHCCHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCCCC
AVVLLKTAAGAPAGRAMLTELPQGGGVEIAIDVQDMAPGLHGFHIHANGECAPGPDAATG
EEEEEEECCCCCCCCHHHHHCCCCCCEEEEEEHHHHCCCCEEEEEEECCCCCCCCCCCCC
RVVDFGAAGGHFDPYMTRNHGRPAQSPHEAHAGEAPNIQVGADGKGSLRFTNPHVTLLAG
CEEEECCCCCCCCCCEECCCCCCCCCCCHHCCCCCCEEEECCCCCCCEEEECCCEEEEEC
KTSVLGRTLVVHEKQDDYASDPAGNSGGRLACGLVEPAAPSMVQGRATIEGANAYPEGIA
CHHHCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCEE
VDPRTGIAYVGSSTEGHLYRIARGTQKAERFQLGGSPGRQAALGMKVDGNGRLWVAGGAT
ECCCCCEEEECCCCCCCEEEEECCCCHHHHEECCCCCCCCEEEEEEECCCCEEEEECCCC
DTVAVVDLQSAATLAVIEGPKDGQAFLNDIALAPQHAYVTDSFRPVLWRIATAPGAPAAL
CEEEEEEECCCEEEEEEECCCCCHHHHHHHHCCCCCEEECCCCCEEEEEEECCCCCCCCC
EPWLDLRNTPIRYRPNQMNLNGIVASDDGRRLLAVQHATGQLWRIDTATRDVAEVRLEGG
CCHHHCCCCCEEECCCEECCEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEEECCC
DLRDGDGLVLAGPGDLYVMRNANNELVRVALAGDWSSGRIVQRLRDPRLKYPTTAALHGS
CCCCCCCEEEECCCCEEEEECCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCEEEECCC
ALLVVNGQLDKQKAPPPLLPFDVLRIALPH
EEEEECCCCCCCCCCCCCCCHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10567266 [H]