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The map label for this gene is mdcF [H]

Identifier: 120613109

GI number: 120613109

Start: 4972860

End: 4973825

Strand: Reverse

Name: mdcF [H]

Synonym: Aave_4474

Alternate gene names: 120613109

Gene position: 4973825-4972860 (Counterclockwise)

Preceding gene: 120613113

Following gene: 120613108

Centisome position: 92.92

GC content: 75.36

Gene sequence:

>966_bases
GTGCTCTCCGTGCTGGCCGTCACCTTTCCCTTCTTCGCGCTCGTGCTGTGCGGGTACCTGGCCACGCGCGCCGGCCGGCT
GCCGCTGGCGGCCATCCCGGGGCTGAACGCCTTCGTGCTGTTCTTCGCGCTGCCGTGCATGCTGTTGCGCTTCGGCGCGC
GCACGCCCATTGCCGAGCTGCTGGATCCCGCGGCGGCGGGTGTGTATCTGGCCTGCGGCCTGGCGCTGGTGGCCGCGGCC
ATCGCGCTCACGCACCGCCGGCTGGGCTGGAACGATGCGGCGTTCGGCGCGCTGGCGACGGCGTTCCCGAACACCGGCTT
CATGGGCGTGCCGCTGCTCGTGGCGCTGCTCGGGCCGGCCGCCGCGGGGCCGGTCATCCTCACGATGCTGCTGGACATGG
TGGTGACCACGGCGGTCTGCGTCGGCCTGTCGCGCCTGGGCGGAGGGGGCGAGCCGGGCGCCGAAGGCGCGCGGGCGGCA
CTGGGGCGGGCCCTGCGCGGCATCGCTGCCAATCCCATGCCCTGGTCGATCGCGCTGGGCGCGCTGGCTTCCGGGCTGCA
GGTGGCCCTGCCGGGGCCCGTGGAACGCACCGTGGGGCTGCTGGCGGATGCGGCGGCGCCCGTGGCGCTGTTCACCATCG
GCGCGGTGCTGGCGCGAGCGGCCATGGCCGCGCATCCCGAAGAGGCCCTGCGCCCCCGGGACGGCCTGGGCGCGGCGCTG
GCCAAGCTGGTGGCGCATCCGGTGCTCGTCTGGGGCGTGGGCCATGCGGCGATCGCCGCGGGCGCGCCGCTGTCCGCGCC
GGCGCACACCGCGCTGATCCTCGCGGCGGCGCTGCCGAGCGCCAGCAACGTCTCGCTGCTGGCAGAGCGCTTCGGCGCGC
ACACGGGGCGCATCGCCCGGGTGATCCTGGTGTCCACCGTGCTGGCTTTCCTGAGCTTTTCTGCGGCGGTGGCCCTCTGG
GCCTGA

Upstream 100 bases:

>100_bases
GCAAACGCGGGCGGCGTTGCGGCGGCGTCCTACAGTCGGGCCGGGACCAGGACAGCGGCCCCCGGGCCCGGAGATCGATG
CCGGGCTGCGAGAATGCCCC

Downstream 100 bases:

>100_bases
GCGCTTCGCATTCCCGTGGCCGGCTTCGGCCCCGTCATCGGTGCGTTACGTGATTTCACGATATTGGCGGCGTTGCAAGG
CGCCCCCCTGCGGCGCCTTC

Product: auxin efflux carrier

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MLSVLAVTFPFFALVLCGYLATRAGRLPLAAIPGLNAFVLFFALPCMLLRFGARTPIAELLDPAAAGVYLACGLALVAAA
IALTHRRLGWNDAAFGALATAFPNTGFMGVPLLVALLGPAAAGPVILTMLLDMVVTTAVCVGLSRLGGGGEPGAEGARAA
LGRALRGIAANPMPWSIALGALASGLQVALPGPVERTVGLLADAAAPVALFTIGAVLARAAMAAHPEEALRPRDGLGAAL
AKLVAHPVLVWGVGHAAIAAGAPLSAPAHTALILAAALPSASNVSLLAERFGAHTGRIARVILVSTVLAFLSFSAAVALW
A

Sequences:

>Translated_321_residues
MLSVLAVTFPFFALVLCGYLATRAGRLPLAAIPGLNAFVLFFALPCMLLRFGARTPIAELLDPAAAGVYLACGLALVAAA
IALTHRRLGWNDAAFGALATAFPNTGFMGVPLLVALLGPAAAGPVILTMLLDMVVTTAVCVGLSRLGGGGEPGAEGARAA
LGRALRGIAANPMPWSIALGALASGLQVALPGPVERTVGLLADAAAPVALFTIGAVLARAAMAAHPEEALRPRDGLGAAL
AKLVAHPVLVWGVGHAAIAAGAPLSAPAHTALILAAALPSASNVSLLAERFGAHTGRIARVILVSTVLAFLSFSAAVALW
A
>Mature_321_residues
MLSVLAVTFPFFALVLCGYLATRAGRLPLAAIPGLNAFVLFFALPCMLLRFGARTPIAELLDPAAAGVYLACGLALVAAA
IALTHRRLGWNDAAFGALATAFPNTGFMGVPLLVALLGPAAAGPVILTMLLDMVVTTAVCVGLSRLGGGGEPGAEGARAA
LGRALRGIAANPMPWSIALGALASGLQVALPGPVERTVGLLADAAAPVALFTIGAVLARAAMAAHPEEALRPRDGLGAAL
AKLVAHPVLVWGVGHAAIAAGAPLSAPAHTALILAAALPSASNVSLLAERFGAHTGRIARVILVSTVLAFLSFSAAVALW
A

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 32092; Mature: 32092

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSVLAVTFPFFALVLCGYLATRAGRLPLAAIPGLNAFVLFFALPCMLLRFGARTPIAEL
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHH
LDPAAAGVYLACGLALVAAAIALTHRRLGWNDAAFGALATAFPNTGFMGVPLLVALLGPA
HCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
AAGPVILTMLLDMVVTTAVCVGLSRLGGGGEPGAEGARAALGRALRGIAANPMPWSIALG
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHH
ALASGLQVALPGPVERTVGLLADAAAPVALFTIGAVLARAAMAAHPEEALRPRDGLGAAL
HHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHH
AKLVAHPVLVWGVGHAAIAAGAPLSAPAHTALILAAALPSASNVSLLAERFGAHTGRIAR
HHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHH
VILVSTVLAFLSFSAAVALWA
HHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLSVLAVTFPFFALVLCGYLATRAGRLPLAAIPGLNAFVLFFALPCMLLRFGARTPIAEL
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHH
LDPAAAGVYLACGLALVAAAIALTHRRLGWNDAAFGALATAFPNTGFMGVPLLVALLGPA
HCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
AAGPVILTMLLDMVVTTAVCVGLSRLGGGGEPGAEGARAALGRALRGIAANPMPWSIALG
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHH
ALASGLQVALPGPVERTVGLLADAAAPVALFTIGAVLARAAMAAHPEEALRPRDGLGAAL
HHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHH
AKLVAHPVLVWGVGHAAIAAGAPLSAPAHTALILAAALPSASNVSLLAERFGAHTGRIAR
HHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHH
VILVSTVLAFLSFSAAVALWA
HHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10858449; 11481430 [H]