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The map label for this gene is yddU [C]

Identifier: 120611756

GI number: 120611756

Start: 3415998

End: 3417785

Strand: Direct

Name: yddU [C]

Synonym: Aave_3096

Alternate gene names: 120611756

Gene position: 3415998-3417785 (Clockwise)

Preceding gene: 120611753

Following gene: 120611760

Centisome position: 63.82

GC content: 68.79

Gene sequence:

>1788_bases
ATGACGCTCCCGATCAGCGCAGAACAGCAACGGCTGACGGCCCTGCGGGCCACCGGTCTGCTGGACACTCCGCCGACCGA
GGAGTTCGACCGCATCACCCGGCTGGCCAGCCGCCTTTTCGACGTTCCCATCGCGCTCGTCAGCCTGGTGGACGCGGACC
GCCAATGGTTCAAGTCGCAGATCGGGTTGCCGGTCCGCGAAACCTGCCGCGAGGATGCCTTCTGCGATCACACCATCCGA
ACCTCCGAGGTCATGGTCGTGGAAGACGCGCTGCAGGATCCACGTTTCGCCGCCAATCCGCTCGTCCAGGGGCCACCGCA
CATCCGCTTCTATGCCGGCGCGCCCCTGATCCTGCGGGGCCACCACCACCTGGGCAGCCTGTGCCTCATCGACTCCGTGC
CCCGTGCGTTCGATACCGCACAGCAGCGGCAACTGGCAGACCTGGCCGCGCTGGTGATGGCCCAGATCGACCTGCAGTGC
GCCGCCGCGCGCCTGGACGAATCCACCCTGCTGCCGAACCGGACGCAACTGCTGCAGGACCTCCATGGGCTGTGCCTGGC
GGCGCCCGGCGAGCAGCGCGTGCTGGTCCTGCTCGAACTCCTGCCGCACGACGGCATCATGGATGCCGCCCGCGCCATCG
GCATGCAGCCCATCGAACAGCTGACCTACGAGGCGGGCAGGCGGCTGGCCGGCTTCGTCGGCAGCCAGTCCCGCGTGTAC
CACACCGGCGTTGCCCGGCTGGCCCTCGTGCTGCGGGACACCGACGGACAGACCGTGGCGCAATTCACGCAGCAATTGCT
GGACACCCTGGCCGCGCCGCTGTCCACGGGCTCGGGCATCGTCATCAACCAGCGGCGACGCATCGGCCTGGCCCCCTTCA
CGCTGGAGCCGGCGGACGCCGTCGATTCCCTGCGGCGCGCCAACGCCGCGCTCTACCACCAGCCGATGTCCGGCACGGCG
GTCTGCAGCTACGACGCCGCGGTGGACCTCAGCTACCGCCGCTCCTACGAGCTGATGGCCAGCATCCCCCGTGCGCTGAT
GGCGGGAGAATTCCGGCTCGTGTACCAGCCCCAGTTCGAGCGTGCTTCCACGCGCTACACCTGCATGGAGGCCCTGCTGC
GCTGGGACCATCCCCAACTGGGTACGGTGTCACCCGGCGACTTCATTCCCCTGCTGGAAAAGACCACCTACATCCAGGCC
GTCACCGAATGGGTGCTGCACACGGCGCTGGCGCAGGTCCGCGCGTGGGAAGACGCCGGCCTGGAGGTGGACGTGGCGAT
CAACGTGTCGCCGCGCAACCTCGAGCAGCCCGGGTTCGCCGGCATGCTCCGGGATGCCTTCGCCCGGCACAGGCTCGCCC
CATCGCGCCTCGAGATCGAGTGCACCGAAAACGCCGTGCTGACGGAAGGCCCCACGCTGGAAGGCATCAAGGCGGCCCGC
GCAATGGGCGTGCGCGTGGCGCTCGACGATTTCGGCACCGGCTACTGCAATTTCGGGTGCCTCTACGACCTCTCGGCCGA
GGTACTCAAGCTCGACCAGGCCCTGATCCGGCCCATCGGGACCGATGCCCGCGCGCTCGATGTCGTGCGCGGCATGGTCC
AGCTCGGCCACACCCTGGGCTACCGCCTCCTGGCCGAAGGCGTGGAAACCGCCGAAGTGTTCGACCAGCTCATGGAGCTC
GGCTGCGACCAGGTGCAGGGCTATTACCTGAGCCGCCCCCTGCCGCCCGCCGAGGCCTTCGCCTTCGTGCATCGCTGGAA
CCGGCTCGTCACGCTCGAGCAGGGCTGA

Upstream 100 bases:

>100_bases
CAAAAGCCAAGGTTGAGAAAATTGAATATGCTCTACTGTGGGCATCGTCCAGCTCTCTCTTCCGACGGGCAGCCTCCTCC
TCACGTATTTCCACCCCTCC

Downstream 100 bases:

>100_bases
GCGGGCGGGAACAACGCCGCGTTTCCGGCCGCGCCGTGGCGGCAGCTAACGCTCCGCGTCGGACGGCCTGCGCTTCGGAT
CGAAGGGAAAGTCCGGCTGC

Product: GAF sensor-containing diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 595; Mature: 594

Protein sequence:

>595_residues
MTLPISAEQQRLTALRATGLLDTPPTEEFDRITRLASRLFDVPIALVSLVDADRQWFKSQIGLPVRETCREDAFCDHTIR
TSEVMVVEDALQDPRFAANPLVQGPPHIRFYAGAPLILRGHHHLGSLCLIDSVPRAFDTAQQRQLADLAALVMAQIDLQC
AAARLDESTLLPNRTQLLQDLHGLCLAAPGEQRVLVLLELLPHDGIMDAARAIGMQPIEQLTYEAGRRLAGFVGSQSRVY
HTGVARLALVLRDTDGQTVAQFTQQLLDTLAAPLSTGSGIVINQRRRIGLAPFTLEPADAVDSLRRANAALYHQPMSGTA
VCSYDAAVDLSYRRSYELMASIPRALMAGEFRLVYQPQFERASTRYTCMEALLRWDHPQLGTVSPGDFIPLLEKTTYIQA
VTEWVLHTALAQVRAWEDAGLEVDVAINVSPRNLEQPGFAGMLRDAFARHRLAPSRLEIECTENAVLTEGPTLEGIKAAR
AMGVRVALDDFGTGYCNFGCLYDLSAEVLKLDQALIRPIGTDARALDVVRGMVQLGHTLGYRLLAEGVETAEVFDQLMEL
GCDQVQGYYLSRPLPPAEAFAFVHRWNRLVTLEQG

Sequences:

>Translated_595_residues
MTLPISAEQQRLTALRATGLLDTPPTEEFDRITRLASRLFDVPIALVSLVDADRQWFKSQIGLPVRETCREDAFCDHTIR
TSEVMVVEDALQDPRFAANPLVQGPPHIRFYAGAPLILRGHHHLGSLCLIDSVPRAFDTAQQRQLADLAALVMAQIDLQC
AAARLDESTLLPNRTQLLQDLHGLCLAAPGEQRVLVLLELLPHDGIMDAARAIGMQPIEQLTYEAGRRLAGFVGSQSRVY
HTGVARLALVLRDTDGQTVAQFTQQLLDTLAAPLSTGSGIVINQRRRIGLAPFTLEPADAVDSLRRANAALYHQPMSGTA
VCSYDAAVDLSYRRSYELMASIPRALMAGEFRLVYQPQFERASTRYTCMEALLRWDHPQLGTVSPGDFIPLLEKTTYIQA
VTEWVLHTALAQVRAWEDAGLEVDVAINVSPRNLEQPGFAGMLRDAFARHRLAPSRLEIECTENAVLTEGPTLEGIKAAR
AMGVRVALDDFGTGYCNFGCLYDLSAEVLKLDQALIRPIGTDARALDVVRGMVQLGHTLGYRLLAEGVETAEVFDQLMEL
GCDQVQGYYLSRPLPPAEAFAFVHRWNRLVTLEQG
>Mature_594_residues
TLPISAEQQRLTALRATGLLDTPPTEEFDRITRLASRLFDVPIALVSLVDADRQWFKSQIGLPVRETCREDAFCDHTIRT
SEVMVVEDALQDPRFAANPLVQGPPHIRFYAGAPLILRGHHHLGSLCLIDSVPRAFDTAQQRQLADLAALVMAQIDLQCA
AARLDESTLLPNRTQLLQDLHGLCLAAPGEQRVLVLLELLPHDGIMDAARAIGMQPIEQLTYEAGRRLAGFVGSQSRVYH
TGVARLALVLRDTDGQTVAQFTQQLLDTLAAPLSTGSGIVINQRRRIGLAPFTLEPADAVDSLRRANAALYHQPMSGTAV
CSYDAAVDLSYRRSYELMASIPRALMAGEFRLVYQPQFERASTRYTCMEALLRWDHPQLGTVSPGDFIPLLEKTTYIQAV
TEWVLHTALAQVRAWEDAGLEVDVAINVSPRNLEQPGFAGMLRDAFARHRLAPSRLEIECTENAVLTEGPTLEGIKAARA
MGVRVALDDFGTGYCNFGCLYDLSAEVLKLDQALIRPIGTDARALDVVRGMVQLGHTLGYRLLAEGVETAEVFDQLMELG
CDQVQGYYLSRPLPPAEAFAFVHRWNRLVTLEQG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=425, Percent_Identity=26.1176470588235, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1787541, Length=430, Percent_Identity=26.2790697674419, Blast_Score=136, Evalue=5e-33,
Organism=Escherichia coli, GI1790496, Length=236, Percent_Identity=29.6610169491525, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI1788502, Length=269, Percent_Identity=32.3420074349442, Blast_Score=122, Evalue=7e-29,
Organism=Escherichia coli, GI1787055, Length=241, Percent_Identity=32.7800829875519, Blast_Score=119, Evalue=6e-28,
Organism=Escherichia coli, GI87081980, Length=256, Percent_Identity=32.421875, Blast_Score=113, Evalue=4e-26,
Organism=Escherichia coli, GI87081845, Length=258, Percent_Identity=29.8449612403101, Blast_Score=112, Evalue=9e-26,
Organism=Escherichia coli, GI226510982, Length=240, Percent_Identity=30, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI87081743, Length=221, Percent_Identity=27.1493212669683, Blast_Score=102, Evalue=8e-23,
Organism=Escherichia coli, GI1786507, Length=248, Percent_Identity=29.4354838709677, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI87082096, Length=242, Percent_Identity=28.5123966942149, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1788849, Length=240, Percent_Identity=28.3333333333333, Blast_Score=97, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 65638; Mature: 65507

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLPISAEQQRLTALRATGLLDTPPTEEFDRITRLASRLFDVPIALVSLVDADRQWFKSQ
CCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGLPVRETCREDAFCDHTIRTSEVMVVEDALQDPRFAANPLVQGPPHIRFYAGAPLILRG
CCCCHHHHHCCCCCCCCCCCCCCEEEEHHHHCCCCCCCCCCCCCCCCEEEEECCCEEEEC
HHHLGSLCLIDSVPRAFDTAQQRQLADLAALVMAQIDLQCAAARLDESTLLPNRTQLLQD
CCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
LHGLCLAAPGEQRVLVLLELLPHDGIMDAARAIGMQPIEQLTYEAGRRLAGFVGSQSRVY
HHHHEEECCCCCCEEHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEE
HTGVARLALVLRDTDGQTVAQFTQQLLDTLAAPLSTGSGIVINQRRRIGLAPFTLEPADA
HHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHH
VDSLRRANAALYHQPMSGTAVCSYDAAVDLSYRRSYELMASIPRALMAGEFRLVYQPQFE
HHHHHHHCHHHEECCCCCCEEEECCCEEEHHHHHHHHHHHHHHHHHHCCCEEEEECCCHH
RASTRYTCMEALLRWDHPQLGTVSPGDFIPLLEKTTYIQAVTEWVLHTALAQVRAWEDAG
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LEVDVAINVSPRNLEQPGFAGMLRDAFARHRLAPSRLEIECTENAVLTEGPTLEGIKAAR
CEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCEEECCCCCHHHHHHHH
AMGVRVALDDFGTGYCNFGCLYDLSAEVLKLDQALIRPIGTDARALDVVRGMVQLGHTLG
HHCCEEEEECCCCCCCCCCCHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
YRLLAEGVETAEVFDQLMELGCDQVQGYYLSRPLPPAEAFAFVHRWNRLVTLEQG
HHHHHHCCHHHHHHHHHHHCCCHHHCCEEECCCCCHHHHHHHHHHCCCEEEEECC
>Mature Secondary Structure 
TLPISAEQQRLTALRATGLLDTPPTEEFDRITRLASRLFDVPIALVSLVDADRQWFKSQ
CCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IGLPVRETCREDAFCDHTIRTSEVMVVEDALQDPRFAANPLVQGPPHIRFYAGAPLILRG
CCCCHHHHHCCCCCCCCCCCCCCEEEEHHHHCCCCCCCCCCCCCCCCEEEEECCCEEEEC
HHHLGSLCLIDSVPRAFDTAQQRQLADLAALVMAQIDLQCAAARLDESTLLPNRTQLLQD
CCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
LHGLCLAAPGEQRVLVLLELLPHDGIMDAARAIGMQPIEQLTYEAGRRLAGFVGSQSRVY
HHHHEEECCCCCCEEHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEE
HTGVARLALVLRDTDGQTVAQFTQQLLDTLAAPLSTGSGIVINQRRRIGLAPFTLEPADA
HHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHH
VDSLRRANAALYHQPMSGTAVCSYDAAVDLSYRRSYELMASIPRALMAGEFRLVYQPQFE
HHHHHHHCHHHEECCCCCCEEEECCCEEEHHHHHHHHHHHHHHHHHHCCCEEEEECCCHH
RASTRYTCMEALLRWDHPQLGTVSPGDFIPLLEKTTYIQAVTEWVLHTALAQVRAWEDAG
HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
LEVDVAINVSPRNLEQPGFAGMLRDAFARHRLAPSRLEIECTENAVLTEGPTLEGIKAAR
CEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCEEECCCCCHHHHHHHH
AMGVRVALDDFGTGYCNFGCLYDLSAEVLKLDQALIRPIGTDARALDVVRGMVQLGHTLG
HHCCEEEEECCCCCCCCCCCHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
YRLLAEGVETAEVFDQLMELGCDQVQGYYLSRPLPPAEAFAFVHRWNRLVTLEQG
HHHHHHCCHHHHHHHHHHHCCCHHHCCEEECCCCCHHHHHHHHHHCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]